Rroxscaffold_6G00395040

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016173
Physical Location & Seq
Reverse (-)
16000531 .. 16007601
7071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395040.1

Sequence Viewer

Length: 1734 bp
ATGGCCGAATCGCGGGAATCGACAAAACTCATGTTCGGCTACGGTAACATTCGTGGCTCAATTCCGAGCTCCACCGGCCGAGCCACGCAGCAAAGCACCACCACAAGCGTGACCAGGGTGAAGAGGCGAGCCACCGATGCCCGATTCCGTCATGGGGTGGCGGAGAAGGAAGAAATCGGAAGGAGAAGAAACCGGCCGAAGAAGAGAAAGGATCGGGGAGAGGAGAGAGAAAAGCTGGCGTTAGAGTCTGGGAAGCTGGATTGGCACGGAGACCCACAGCAGCAGTCCCAGCACCATGGGACTTGCTCTTCCTCTTCTGCTTGGCCACCCCTCGATCCCCACCACAACCCTCATAACATTCCCCACCATCCTATTCCTCCTCACCAGCTCGACTACCATCCCCACCACCACGATCCCAACCACGCCAATGGCTTCGCCAATCCGGTGCCGTTTTCTGTACGCAAAAGGGCCTGGCAACACTCTAATCAAGGACTTCCTAGAGATAGCTTTGAAAACCCCAATCATGCTAAGCTTTATGTTGCACAAATTTCAAGAACAGCCACGGACGACGTTATTCGCTCCTTGTTTGGACAATTTGGAGACATAGTCGAGGTTGTAATGTTGAAGGATAAGCGGACGGGCTTCCAACAAGGTACCTCAATTGCCATTGGGAAAGGGAAGGGAAAAGGGGGAAATTGTTTCGTGAAGTATTCAACATTAGATGCAGCAGAGAGGGCTATCAGAGCTTTAAATAATCAATATTATTTTCCTGGGGAGGCAAACCCTATCATAGTCAAATTTGCTGACGGGGAAAGGGAACGCCTTGGGGTACAAGACAGATTGTATGTTGGTGGCATTAACCTGGAAGCTTCAAATAAAGACATTGAGGAAATATTTTCACCTTATGGTCTTGTTGAAGATATCTACATTTTGAAGCACAATCGTGGATGTGGGTTTGTTAAATTTTCCAGTGGAGATATGGCTGTGCAAGCAATCAAAGCTTTAAATGGAAGCTTTATTATGAGAGGTTGTGCTCAGCCATTGATTGTTCGTTTTGCGGATCCTAAGAAACCAAGGGAAATAGATCGAAGGGGTAATTATGTATTTAGCAGTGCACCTGGTGGTCCGTACTCTCACGAACCAGTTAGGGTAGTATCTGATCATAGAACCACAGGCTTCTACAGTGATGCAACCAACGTTTCCTCCATTAAGACCACCTTTACAGTTGTGCAGGATGCCTATACAACAAACACAGAATACACAAGTAGCAGTCACGGAGACGCAGAAACAGCATCTGACACAATCATCTGGGCAAATTCTGGGGCAGCAACAGAGTTCTCAGCTGCGCTGCCTTCAAGTCATGAGATAACTGCTCCTCTAGAGTGTGACTGGAGTGAACATACCTGCCCTGATGGATACAAGTATTATTATAATTGTGAAACTTGTGAGAGCAGATGGGACAAACCTGAGGAGTTTGCTTTATTTGAGCAACAATTGCAGACGCAAACACAGCCGAATAATCCTTCTCATCATCTTCAATCCGTGTCATTGGTTCCTTCTACGCAAATAGTTTGTCAAAATCAGCAGGAACTGAATCAGAGTGGTCTACATAACACACCTGTTCCTGTCCTTAGGGGAGGACTGAGCCATCAATTGGCTGTTGTTATAATTGCAAAATCCCAACATTATTGGTTCACTCCCATTATTGGTTCATTCCTGTCTTTTTACCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 WW

Protein Analysis

577

Amino Acids

64.48

Weight (kDa)

8.02

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 178 - 256 2e-08 RNA recognition motif
RRM_1 PF00076 281 - 341 1.2e-13 RNA recognition motif
WW PF00397 460 - 489 1.3e-09 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47310
fragaria_vesca FvH4_1g26970
malus_domestica MD09G1285500.v1.1
prunus_persica Prupe.3G008500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487191
rosa_multiflora Rmu_sc0012751.1_g000001 Rmu_ssc0000366.1_g000028
rosa_roxburghii Rroxscaffold_6G00395040
rosa_rugosa Rorug03G0232100 Rorug03G0232200
rosa_samantha Rh3AG280100 Rh3BG316100 Rh3CG314200 Rh3DG311500
rosa_wichuraiana Rw3G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1431, 1667
Acc36I ACCTGC 1 cut(s) 1412
Acc65I GGTACC 1 cut(s) 653
AccB1I GGYRCC 2 cut(s) 445, 653
AccB7I CCANNNNNTGG 1 cut(s) 1654
AccI GTMKAC 1 cut(s) 1606
AccII CGCG 1 cut(s) 13
AciI CCGC 4 cut(s) 13, 161, 634, 1058
AclI AACGTT 1 cut(s) 1197
AclWI GGATC 5 cut(s) 219, 329, 407, 1055, 1068
AcoI YGGCCR 4 cut(s) 3, 76, 194, 323
AcsI RAATTY 4 cut(s) 546, 797, 962, 1315
AdeI CACNNNGTG 1 cut(s) 1121
AfaI GTAC 4 cut(s) 459, 655, 831, 1130
AfiI CCNNNNNNNGG 4 cut(s) 12, 154, 1654, 1706
AgsI TTSAA 9 cut(s) 512, 552, 625, 714, 873, 917, 934, 1356, 1538
AjnI CCWGG 5 cut(s) 113, 470, 769, 861, 1117
AleI CACNNNNGTG 2 cut(s) 107, 942
Alw21I GWGCWC 3 cut(s) 71, 1036, 1117
Alw26I GTCTC 3 cut(s) 264, 594, 1272
Alw44I GTGCAC 1 cut(s) 1113
AlwI GGATC 5 cut(s) 219, 329, 407, 1055, 1068
AlwNI CAGNNNCTG 2 cut(s) 1295, 1591
AoxI GGCC 5 cut(s) 3, 76, 194, 323, 468
ApaLI GTGCAC 1 cut(s) 1113
ApeKI GCWGC 6 cut(s) 88, 280, 725, 1325, 1343, 1348
ApoI RAATTY 4 cut(s) 546, 797, 962, 1315
ArsI GACNNNNNNTTYG 2 cut(s) 1558, 1590
Asp718I GGTACC 1 cut(s) 653
AspLEI GCGC 1 cut(s) 1348
AspS9I GGNCC 2 cut(s) 468, 1124
AsuHPI GGTGA 3 cut(s) 130, 374, 891
AvaII GGWCC 1 cut(s) 1124
AxyI CCTNAGG 2 cut(s) 1467, 1631
BaeGI GKGCMC 1 cut(s) 1117
BalI TGGCCA 1 cut(s) 325
BamHI GGATCC 1 cut(s) 1060
BanI GGYRCC 2 cut(s) 445, 653
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 3 cut(s) 71, 1036, 1117
BbvI GCAGC 6 cut(s) 100, 292, 737, 1330, 1335, 1337
BccI CCATC 5 cut(s) 375, 405, 1406, 1449, 1656
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 5 cut(s) 115, 472, 771, 863, 1119
BciVI GTATCC 1 cut(s) 1409
BclI TGATCA 1 cut(s) 1159
BcoDI GTCTC 3 cut(s) 264, 594, 1272
BfaI CTAG 2 cut(s) 498, 1379
BfmI CTRYAG 1 cut(s) 1180
BfuAI ACCTGC 1 cut(s) 1412
BfuI GTATCC 1 cut(s) 1409
BisI GCNGC 6 cut(s) 89, 281, 726, 1326, 1344, 1349
BlpI GCTNAGC 2 cut(s) 528, 1035
BlsI GCNGC 6 cut(s) 90, 282, 727, 1327, 1345, 1350
Bme1390I CCNGG 5 cut(s) 115, 472, 771, 863, 1119
Bme18I GGWCC 1 cut(s) 1124
BmgT120I GGNCC 2 cut(s) 468, 1124
BmiI GGNNCC 4 cut(s) 447, 655, 1062, 1554
BmrFI CCNGG 5 cut(s) 115, 472, 771, 863, 1119
BmsI GCATC 5 cut(s) 127, 712, 1177, 1225, 1301
BpmI CTGGAG 1 cut(s) 1411
Bpu1102I GCTNAGC 2 cut(s) 528, 1035
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 6 cut(s) 114, 295, 561, 770, 823, 1073
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 4 cut(s) 591, 621, 1187, 1217
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 154, 1654, 1706
Bse118I RCCGGY 2 cut(s) 74, 192
Bse1I ACTGG 3 cut(s) 969, 1142, 1394
Bse21I CCTNAGG 2 cut(s) 1467, 1631
BseBI CCWGG 5 cut(s) 115, 472, 771, 863, 1119
BseDI CCNNGG 6 cut(s) 114, 295, 561, 770, 823, 1073
BseGI GGATG 4 cut(s) 367, 397, 953, 1240
BseLI CCNNNNNNNGG 4 cut(s) 12, 154, 1654, 1706
BseMII CTCAG 4 cut(s) 1049, 1353, 1458, 1634
BseNI ACTGG 3 cut(s) 969, 1142, 1394
BseRI GAGGAG 4 cut(s) 236, 369, 1365, 1484
BseSI GKGCMC 1 cut(s) 1117
BseX3I CGGCCG 2 cut(s) 76, 194
BseXI GCAGC 6 cut(s) 100, 292, 737, 1330, 1335, 1337
BseYI CCCAGC 1 cut(s) 288
BsgI GTGCAG 1 cut(s) 1250
Bsh1236I CGCG 1 cut(s) 13
Bsh1285I CGRYCG 2 cut(s) 79, 197
BshFI GGCC 5 cut(s) 5, 78, 196, 325, 470
BshNI GGYRCC 2 cut(s) 445, 653
BsiEI CGRYCG 2 cut(s) 79, 197
BsiHKAI GWGCWC 3 cut(s) 71, 1036, 1117
BsiSI CCGG 3 cut(s) 75, 193, 443
BslFI GGGAC 3 cut(s) 271, 313, 1472
BslI CCNNNNNNNGG 4 cut(s) 12, 154, 1654, 1706
BsmAI GTCTC 3 cut(s) 264, 594, 1272
BsmBI CGTCTC 1 cut(s) 1272
BsmFI GGGAC 3 cut(s) 271, 313, 1472
BsnI GGCC 5 cut(s) 5, 78, 196, 325, 470
Bso31I GGTCTC 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 71, 1036, 1117
Bsp143I GATC 6 cut(s) 211, 334, 412, 1060, 1084, 1159
Bsp1720I GCTNAGC 2 cut(s) 528, 1035
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 4 cut(s) 13, 161, 634, 1058
BspANI GGCC 5 cut(s) 5, 78, 196, 325, 470
BspCNI CTCAG 4 cut(s) 1048, 1352, 1459, 1635
BspFNI CGCG 1 cut(s) 13
BspHI TCATGA 1 cut(s) 1360
BspLI GGNNCC 4 cut(s) 447, 655, 1062, 1554
BspMI ACCTGC 1 cut(s) 1412
BspPI GGATC 5 cut(s) 219, 329, 407, 1055, 1068
BspQI GCTCTTC 1 cut(s) 313
BspT107I GGYRCC 2 cut(s) 445, 653
BspTNI GGTCTC 1 cut(s) 264
BsrFI RCCGGY 2 cut(s) 74, 192
BsrI ACTGG 3 cut(s) 969, 1142, 1394
BssAI RCCGGY 2 cut(s) 74, 192
BssECI CCNNGG 6 cut(s) 114, 295, 561, 770, 823, 1073
BssMI GATC 6 cut(s) 211, 334, 412, 1060, 1084, 1159
BssT1I CCWWGG 3 cut(s) 295, 823, 1073
Bst2UI CCWGG 5 cut(s) 115, 472, 771, 863, 1119
Bst4CI ACNGT 3 cut(s) 44, 1184, 1225
Bst6I CTCTTC 4 cut(s) 116, 197, 313, 319
BstAPI GCANNNNNTGC 1 cut(s) 1495
BstC8I GCNNGC 3 cut(s) 129, 237, 990
BstDEI CTNAG 7 cut(s) 528, 1035, 1065, 1339, 1467, 1631, 1643
BstDSI CCRYGG 2 cut(s) 295, 561
BstF5I GGATG 4 cut(s) 367, 397, 953, 1240
BstFNI CGCG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 1348
BstKTI GATC 6 cut(s) 214, 337, 415, 1063, 1087, 1162
BstMAI GTCTC 3 cut(s) 264, 594, 1272
BstMBI GATC 6 cut(s) 211, 334, 412, 1060, 1084, 1159
BstMCI CGRYCG 2 cut(s) 79, 197
BstNI CCWGG 5 cut(s) 115, 472, 771, 863, 1119
BstSCI CCNGG 5 cut(s) 113, 470, 769, 861, 1117
BstSFI CTRYAG 1 cut(s) 1180
BstSLI GKGCMC 1 cut(s) 1117
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 6 cut(s) 100, 292, 737, 1330, 1335, 1337
BstX2I RGATCY 1 cut(s) 1060
BstXI CCANNNNNNTGG 2 cut(s) 296, 428
BstYI RGATCY 1 cut(s) 1060
BstZI CGGCCG 2 cut(s) 76, 194
Bsu36I CCTNAGG 2 cut(s) 1467, 1631
BsuI GTATCC 1 cut(s) 1409
BsuRI GGCC 5 cut(s) 5, 78, 196, 325, 470
BtgI CCRYGG 2 cut(s) 295, 561
BtsCI GGATG 4 cut(s) 367, 397, 953, 1240
BtsI GCAGTG 1 cut(s) 1117
BtsIMutI CAGTG 3 cut(s) 976, 1117, 1189
BveI ACCTGC 1 cut(s) 1412
Cac8I GCNNGC 3 cut(s) 129, 237, 990
CaiI CAGNNNCTG 2 cut(s) 1295, 1591
CciI TCATGA 1 cut(s) 1360
CfoI GCGC 1 cut(s) 1348
Cfr10I RCCGGY 2 cut(s) 74, 192
Cfr13I GGNCC 2 cut(s) 468, 1124
CseI GACGC 2 cut(s) 1289, 1510
CsiI ACCWGGT 1 cut(s) 1117
Csp6I GTAC 4 cut(s) 458, 654, 830, 1129
CviAII CATG 5 cut(s) 31, 152, 296, 524, 1361
CviQI GTAC 4 cut(s) 458, 654, 830, 1129
DdeI CTNAG 7 cut(s) 528, 1035, 1065, 1339, 1467, 1631, 1643
DpnI GATC 6 cut(s) 213, 336, 414, 1062, 1086, 1161
DpnII GATC 6 cut(s) 211, 334, 412, 1060, 1084, 1159
DraI TTTAAA 2 cut(s) 750, 1005
DraIII CACNNNGTG 1 cut(s) 1121
EaeI YGGCCR 4 cut(s) 3, 76, 194, 323
EagI CGGCCG 2 cut(s) 76, 194
Eam1104I CTCTTC 4 cut(s) 116, 197, 313, 319
EarI CTCTTC 4 cut(s) 116, 197, 313, 319
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 69
EclXI CGGCCG 2 cut(s) 76, 194
Eco130I CCWWGG 3 cut(s) 295, 823, 1073
Eco24I GRGCYC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 264
Eco32I GATATC 1 cut(s) 922
Eco47I GGWCC 1 cut(s) 1124
Eco52I CGGCCG 2 cut(s) 76, 194
Eco53kI GAGCTC 1 cut(s) 69
Eco81I CCTNAGG 2 cut(s) 1467, 1631
EcoICRI GAGCTC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 468
EcoRII CCWGG 5 cut(s) 113, 470, 769, 861, 1117
EcoRV GATATC 1 cut(s) 922
EcoT14I CCWWGG 3 cut(s) 295, 823, 1073
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 3 cut(s) 295, 823, 1073
Esp3I CGTCTC 1 cut(s) 1272
FaeI CATG 5 cut(s) 34, 155, 299, 527, 1364
FalI AAGNNNNNCTT 2 cut(s) 1202, 1234
FaqI GGGAC 3 cut(s) 271, 313, 1472
FatI CATG 5 cut(s) 30, 151, 295, 523, 1360
FauI CCCGC 1 cut(s) 6
FbaI TGATCA 1 cut(s) 1159
FblI GTMKAC 1 cut(s) 1606
Fnu4HI GCNGC 6 cut(s) 89, 281, 726, 1326, 1344, 1349
FokI GGATG 4 cut(s) 354, 384, 960, 1247
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 6 cut(s) 89, 281, 726, 1326, 1344, 1349
FspBI CTAG 2 cut(s) 498, 1379
GlaI GCGC 1 cut(s) 1347
GluI GCNGC 6 cut(s) 89, 281, 726, 1326, 1344, 1349
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 1411
HaeIII GGCC 5 cut(s) 5, 78, 196, 325, 470
HapII CCGG 3 cut(s) 75, 193, 443
HgaI GACGC 2 cut(s) 1289, 1510
HhaI GCGC 1 cut(s) 1348
Hin1II CATG 5 cut(s) 34, 155, 299, 527, 1364
Hin6I GCGC 1 cut(s) 1346
HinP1I GCGC 1 cut(s) 1346
HindIII AAGCTT 4 cut(s) 530, 867, 999, 1012
HinfI GANTC 5 cut(s) 8, 17, 144, 245, 1594
HpaII CCGG 3 cut(s) 75, 193, 443
HphI GGTGA 3 cut(s) 130, 374, 891
Hpy166II GTNNAC 4 cut(s) 1115, 1397, 1607, 1695
Hpy188I TCNGA 6 cut(s) 66, 179, 743, 1159, 1297, 1599
Hpy188III TCNNGA 5 cut(s) 552, 703, 1136, 1361, 1379
Hpy8I GTNNAC 4 cut(s) 1115, 1397, 1607, 1695
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 8 cut(s) 160, 174, 619, 673, 1083, 1362, 1533, 1566
HpyCH4III ACNGT 3 cut(s) 44, 1184, 1225
HpyCH4IV ACGT 2 cut(s) 570, 1197
HpyCH4V TGCA 8 cut(s) 542, 725, 988, 1115, 1190, 1231, 1498, 1673
HpyF3I CTNAG 7 cut(s) 528, 1035, 1065, 1339, 1467, 1631, 1643
HpySE526I ACGT 2 cut(s) 570, 1197
Hsp92II CATG 5 cut(s) 34, 155, 299, 527, 1364
HspAI GCGC 1 cut(s) 1346
KpnI GGTACC 1 cut(s) 657
Ksp22I TGATCA 1 cut(s) 1159
Kzo9I GATC 6 cut(s) 211, 334, 412, 1060, 1084, 1159
LguI GCTCTTC 1 cut(s) 313
LmnI GCTCC 3 cut(s) 74, 584, 1378
Lsp1109I GCAGC 6 cut(s) 100, 292, 737, 1330, 1335, 1337
LweI GCATC 5 cut(s) 127, 712, 1177, 1225, 1301
MabI ACCWGGT 1 cut(s) 1117
MaeI CTAG 2 cut(s) 498, 1379
MaeII ACGT 2 cut(s) 570, 1197
MaeIII GTNAC 4 cut(s) 44, 109, 1271, 1385
MalI GATC 6 cut(s) 213, 336, 414, 1062, 1086, 1161
MboI GATC 6 cut(s) 211, 334, 412, 1060, 1084, 1159
MboII GAAGA 9 cut(s) 133, 182, 198, 211, 214, 300, 306, 929, 1526
MfeI CAATTG 3 cut(s) 660, 1493, 1652
MflI RGATCY 1 cut(s) 1060
MhlI GDGCHC 3 cut(s) 71, 1036, 1117
MlsI TGGCCA 1 cut(s) 325
MluNI TGGCCA 1 cut(s) 325
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 670
Mox20I TGGCCA 1 cut(s) 325
MscI TGGCCA 1 cut(s) 325
MseI TTAA 5 cut(s) 749, 858, 960, 1004, 1209
MslI CAYNNNNRTG 3 cut(s) 107, 426, 942
Msp20I TGGCCA 1 cut(s) 325
MspA1I CMGCKG 1 cut(s) 1343
MspI CCGG 3 cut(s) 75, 193, 443
MspR9I CCNGG 5 cut(s) 115, 472, 771, 863, 1119
MunI CAATTG 3 cut(s) 660, 1493, 1652
MvaI CCWGG 5 cut(s) 115, 472, 771, 863, 1119
MvnI CGCG 1 cut(s) 13
NcoI CCATGG 1 cut(s) 295
NdeII GATC 6 cut(s) 211, 334, 412, 1060, 1084, 1159
NlaIII CATG 5 cut(s) 34, 155, 299, 527, 1364
NlaIV GGNNCC 4 cut(s) 447, 655, 1062, 1554
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 3 cut(s) 109, 1271, 1385
OliI CACNNNNGTG 2 cut(s) 107, 942
PagI TCATGA 1 cut(s) 1360
PciSI GCTCTTC 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PfeI GAWTC 4 cut(s) 8, 17, 144, 1594
PflFI GACNNNGTC 1 cut(s) 605
PflMI CCANNNNNTGG 1 cut(s) 1654
PkrI GCNGC 6 cut(s) 90, 282, 727, 1327, 1345, 1350
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PsiI TTATAA 2 cut(s) 1431, 1667
Psp124BI GAGCTC 1 cut(s) 71
Psp1406I AACGTT 1 cut(s) 1197
Psp6I CCWGG 5 cut(s) 113, 470, 769, 861, 1117
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 5 cut(s) 113, 470, 769, 861, 1117
PspN4I GGNNCC 4 cut(s) 447, 655, 1062, 1554
PspPI GGNCC 2 cut(s) 468, 1124
PstNI CAGNNNCTG 2 cut(s) 1295, 1591
PsuI RGATCY 1 cut(s) 1060
PsyI GACNNNGTC 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 1343
RsaI GTAC 4 cut(s) 459, 655, 831, 1130
RsaNI GTAC 4 cut(s) 458, 654, 830, 1129
RseI CAYNNNNRTG 3 cut(s) 107, 426, 942
SacI GAGCTC 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 313
SaqAI TTAA 5 cut(s) 749, 858, 960, 1004, 1209
SatI GCNGC 6 cut(s) 89, 281, 726, 1326, 1344, 1349
Sau3AI GATC 6 cut(s) 211, 334, 412, 1060, 1084, 1159
Sau96I GGNCC 2 cut(s) 468, 1124
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 5 cut(s) 115, 472, 771, 863, 1119
SduI GDGCHC 3 cut(s) 71, 1036, 1117
SexAI ACCWGGT 1 cut(s) 1117
SfaNI GCATC 5 cut(s) 127, 712, 1177, 1225, 1301
SfcI CTRYAG 1 cut(s) 1180
SinI GGWCC 1 cut(s) 1124
SmiMI CAYNNNNRTG 3 cut(s) 107, 426, 942
SsiI CCGC 4 cut(s) 13, 161, 634, 1058
SspI AATATT 2 cut(s) 761, 894
SspMI CTAG 2 cut(s) 498, 1379
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 5 cut(s) 113, 470, 769, 861, 1117
StyI CCWWGG 3 cut(s) 295, 823, 1073
TaaI ACNGT 3 cut(s) 44, 1184, 1225
TaiI ACGT 2 cut(s) 573, 1200
TaqI TCGA 5 cut(s) 20, 333, 390, 609, 1087
TfiI GAWTC 4 cut(s) 8, 17, 144, 1594
Tru1I TTAA 5 cut(s) 749, 858, 960, 1004, 1209
Tru9I TTAA 5 cut(s) 749, 858, 960, 1004, 1209
TscAI CASTG 3 cut(s) 976, 1117, 1189
TseFI GTSAC 3 cut(s) 109, 1271, 1385
TseI GCWGC 6 cut(s) 88, 280, 725, 1325, 1343, 1348
Tsp45I GTSAC 3 cut(s) 109, 1271, 1385
TspDTI ATGAA 1 cut(s) 1701
TspGWI ACGGA 6 cut(s) 137, 282, 578, 1116, 1290, 1531
TspRI CASTG 3 cut(s) 976, 1117, 1189
Tth111I GACNNNGTC 1 cut(s) 605
Van91I CCANNNNNTGG 1 cut(s) 1654
VneI GTGCAC 1 cut(s) 1113
VpaK11BI GGWCC 1 cut(s) 1124
XapI RAATTY 4 cut(s) 546, 797, 962, 1315
XbaI TCTAGA 1 cut(s) 1378
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 1606
XspI CTAG 2 cut(s) 498, 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.