Rh3CG314200

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016173
Physical Location & Seq
Forward (+)
33392864 .. 33398558
5695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG314200.1

Sequence Viewer

Length: 1128 bp
ATGTTGAAGGATAAGCGGACTGGCTTCCAACAAGGAAATTGTTTCGTGAAGTATTCAACATTAGATGCAGCAGAGAGGGCTATCAGAGCTTTAAATAGTCAGCATTATTTTCCTGGGGAGGCAAACCCTATCATAGTCAAATTTGCTGACGGGGAAAGGGAACGCCTTGGGGTACAAGACAGATTGTATGTTTGTGGCATTAACCTGGAAGCTTCAAATAAAGACATTGAGGAAATATTTTCACCTTATGGTCTTGTTGAAGATATCTACATTTTGAAGCACAATCGTGGATGCGGGTTTGTTAAATTTTCCAGTGGAGATATGGCTGTGCAAGCAATCAAAGCTTTAAATGGAACCTTTATTATGAGAGGTTGTGCTCAGCCATTGATTGTTCGTTTTGCGGATCCTAAGAAACCAAGGGAAATAGATCGAAGGGGTAATTATGTATTTAGCAGTGCACCTGGTGGTCCGTTCTCTCACGAACCAGTTAGGGTAGTATCTGATCATAGTGATTCCATTGGAGGACAAAATTTTCTAAATGCATCTTATCCTGTCCAACAAATTTCACAACCCCCTATTCCCTATTTGGCAAACCAGGAACCACAGGCTTCTACAGTGATGCAACCAACGTTTCCTCCATTAAGACCACCTTTACAGTTGTGCAGGATGCCTATACAACAAACACAGAATACACAAAGAAGTTCTCAGTCTTCTCAAGTAGCAGTCATGGAGATGCAGAAACAGCATCTGACACAATCATCTGGGCAAATTCCGGGGCAGCAACAGAGTTCTCAGACATTTTCTAGCAGTTCTACTTCAGCTGCGCTGCCTTCAAGTCATGAGATAACTGCTCCTCTAGAGTGTGACTGGAGTGAACATACCTGCCCTGATGGATACAAGTATTATTATAATTGTGAAACTTGTGAGAGCAGATGGGACAAACCTGAGGAGTTTGCTTCATTTGAGCAACAATTGCAGATGCAAACACAGCCGAATAATCCTTCTCATCATCTTCAATCCATGTCATTGGTTCCTTCTACGCAAATAGTTTGTCAAAATCAGCAGGAACTGAATCAAGTACAATTGCAGTCTGAAACAAGTCCTGTTGTTGGCCCAACATGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 WW

Protein Analysis

375

Amino Acids

41.87

Weight (kDa)

5.87

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 62 - 122 7.3e-13 RNA recognition motif
WW PF00397 286 - 315 7.8e-10 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47310
fragaria_vesca FvH4_1g26970
malus_domestica MD09G1285500.v1.1
prunus_persica Prupe.3G008500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487191
rosa_multiflora Rmu_sc0012751.1_g000001 Rmu_ssc0000366.1_g000028
rosa_roxburghii Rroxscaffold_6G00395040
rosa_rugosa Rorug03G0232100 Rorug03G0232200
rosa_samantha Rh3AG280100 Rh3BG316100 Rh3CG314200 Rh3DG311500
rosa_wichuraiana Rw3G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
Acc36I ACCTGC 1 cut(s) 890
AciI CCGC 3 cut(s) 16, 294, 401
AclI AACGTT 1 cut(s) 629
AclWI GGATC 2 cut(s) 398, 411
AcsI RAATTY 5 cut(s) 140, 305, 529, 561, 768
AcuI CTGAAG 1 cut(s) 801
AdeI CACNNNGTG 1 cut(s) 464
AfaI GTAC 2 cut(s) 174, 1080
AfiI CCNNNNNNNGG 1 cut(s) 1109
AflIII ACRYGT 1 cut(s) 1118
AgsI TTSAA 7 cut(s) 7, 57, 216, 260, 277, 834, 1016
AjnI CCWGG 4 cut(s) 112, 204, 460, 594
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 4 cut(s) 89, 212, 344, 821
AluI AGCT 4 cut(s) 89, 212, 344, 821
Alw21I GWGCWC 2 cut(s) 379, 460
Alw44I GTGCAC 1 cut(s) 456
AlwI GGATC 2 cut(s) 398, 411
AlwNI CAGNNNCTG 2 cut(s) 748, 1069
AoxI GGCC 1 cut(s) 1111
ApaLI GTGCAC 1 cut(s) 456
ApeKI GCWGC 4 cut(s) 68, 778, 821, 826
ApoI RAATTY 5 cut(s) 140, 305, 529, 561, 768
ArsI GACNNNNNNTTYG 2 cut(s) 1036, 1068
AspLEI GCGC 1 cut(s) 826
AspS9I GGNCC 2 cut(s) 467, 1112
AsuC2I CCSGG 1 cut(s) 774
AsuHPI GGTGA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 467
AxyI CCTNAGG 1 cut(s) 945
BaeGI GKGCMC 1 cut(s) 460
BamHI GGATCC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 702
Bbv12I GWGCWC 2 cut(s) 379, 460
BbvI GCAGC 4 cut(s) 80, 790, 808, 813
BccI CCATC 2 cut(s) 884, 927
BciT130I CCWGG 4 cut(s) 114, 206, 462, 596
BciVI GTATCC 1 cut(s) 887
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 774
BfaI CTAG 2 cut(s) 804, 857
BfmI CTRYAG 1 cut(s) 612
BfuAI ACCTGC 1 cut(s) 890
BfuI GTATCC 1 cut(s) 887
BisI GCNGC 4 cut(s) 69, 779, 822, 827
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 4 cut(s) 70, 780, 823, 828
Bme1390I CCNGG 5 cut(s) 114, 206, 462, 596, 774
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 2 cut(s) 467, 1112
BmiI GGNNCC 4 cut(s) 355, 405, 600, 1032
BmrFI CCNGG 5 cut(s) 114, 206, 462, 596, 774
BmsI GCATC 8 cut(s) 55, 281, 551, 609, 657, 723, 754, 969
BpiI GAAGAC 1 cut(s) 702
BpmI CTGGAG 1 cut(s) 889
Bpu1102I GCTNAGC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 699
BpuMI CCSGG 1 cut(s) 774
BsaJI CCNNGG 4 cut(s) 113, 166, 416, 773
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 1 cut(s) 1109
Bse1I ACTGG 4 cut(s) 25, 312, 485, 872
Bse21I CCTNAGG 1 cut(s) 945
BseBI CCWGG 4 cut(s) 114, 206, 462, 596
BseDI CCNNGG 4 cut(s) 113, 166, 416, 773
BseGI GGATG 2 cut(s) 296, 672
BseLI CCNNNNNNNGG 1 cut(s) 1109
BseMII CTCAG 4 cut(s) 392, 719, 806, 936
BseNI ACTGG 4 cut(s) 25, 312, 485, 872
BseRI GAGGAG 2 cut(s) 843, 962
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 4 cut(s) 80, 790, 808, 813
BsgI GTGCAG 1 cut(s) 682
BshFI GGCC 1 cut(s) 1113
BsiHKAI GWGCWC 2 cut(s) 379, 460
BsiSI CCGG 1 cut(s) 773
BslFI GGGAC 1 cut(s) 950
BslI CCNNNNNNNGG 1 cut(s) 1109
BsmFI GGGAC 1 cut(s) 950
BsnI GGCC 1 cut(s) 1113
Bsp1286I GDGCHC 2 cut(s) 379, 460
Bsp143I GATC 3 cut(s) 403, 427, 502
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 3 cut(s) 16, 294, 401
BspANI GGCC 1 cut(s) 1113
BspCNI CTCAG 4 cut(s) 391, 718, 805, 937
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 4 cut(s) 355, 405, 600, 1032
BspMI ACCTGC 1 cut(s) 890
BspPI GGATC 2 cut(s) 398, 411
BsrI ACTGG 4 cut(s) 25, 312, 485, 872
BssECI CCNNGG 4 cut(s) 113, 166, 416, 773
BssMI GATC 3 cut(s) 403, 427, 502
BssT1I CCWWGG 2 cut(s) 166, 416
Bst2UI CCWGG 4 cut(s) 114, 206, 462, 596
Bst4CI ACNGT 2 cut(s) 616, 657
BstAPI GCANNNNNTGC 1 cut(s) 973
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 5 cut(s) 378, 408, 705, 792, 945
BstF5I GGATG 2 cut(s) 296, 672
BstHHI GCGC 1 cut(s) 826
BstKTI GATC 3 cut(s) 406, 430, 505
BstMBI GATC 3 cut(s) 403, 427, 502
BstMWI GCNNNNNNNGC 7 cut(s) 77, 86, 332, 341, 742, 973, 988
BstNI CCWGG 4 cut(s) 114, 206, 462, 596
BstNSI RCATGY 1 cut(s) 1122
BstSCI CCNGG 5 cut(s) 112, 204, 460, 594, 772
BstSFI CTRYAG 1 cut(s) 612
BstSLI GKGCMC 1 cut(s) 460
BstV1I GCAGC 4 cut(s) 80, 790, 808, 813
BstV2I GAAGAC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 403
BstXI CCANNNNNNTGG 1 cut(s) 1027
BstYI RGATCY 1 cut(s) 403
Bsu36I CCTNAGG 1 cut(s) 945
BsuI GTATCC 1 cut(s) 887
BsuRI GGCC 1 cut(s) 1113
BtsCI GGATG 2 cut(s) 296, 672
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 3 cut(s) 319, 460, 621
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 2 cut(s) 748, 1069
CciI TCATGA 1 cut(s) 838
CfoI GCGC 1 cut(s) 826
Cfr13I GGNCC 2 cut(s) 467, 1112
CsiI ACCWGGT 1 cut(s) 460
Csp6I GTAC 2 cut(s) 173, 1079
CviAII CATG 4 cut(s) 727, 839, 1021, 1119
CviQI GTAC 2 cut(s) 173, 1079
DdeI CTNAG 5 cut(s) 378, 408, 705, 792, 945
DpnI GATC 3 cut(s) 405, 429, 504
DpnII GATC 3 cut(s) 403, 427, 502
DraI TTTAAA 2 cut(s) 93, 348
DraIII CACNNNGTG 1 cut(s) 464
Eco130I CCWWGG 2 cut(s) 166, 416
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 801
Eco81I CCTNAGG 1 cut(s) 945
EcoRII CCWGG 4 cut(s) 112, 204, 460, 594
EcoRV GATATC 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 166, 416
EcoT22I ATGCAT 1 cut(s) 544
ErhI CCWWGG 2 cut(s) 166, 416
FaeI CATG 4 cut(s) 730, 842, 1024, 1122
FalI AAGNNNNNCTT 2 cut(s) 634, 666
FaqI GGGAC 1 cut(s) 950
FatI CATG 4 cut(s) 726, 838, 1020, 1118
FauI CCCGC 1 cut(s) 287
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 4 cut(s) 69, 779, 822, 827
FokI GGATG 2 cut(s) 303, 679
Fsp4HI GCNGC 4 cut(s) 69, 779, 822, 827
FspBI CTAG 2 cut(s) 804, 857
GlaI GCGC 1 cut(s) 825
GluI GCNGC 4 cut(s) 69, 779, 822, 827
GsuI CTGGAG 1 cut(s) 889
HaeIII GGCC 1 cut(s) 1113
HapII CCGG 1 cut(s) 773
HhaI GCGC 1 cut(s) 826
Hin1II CATG 4 cut(s) 730, 842, 1024, 1122
Hin6I GCGC 1 cut(s) 824
HinP1I GCGC 1 cut(s) 824
HindIII AAGCTT 2 cut(s) 210, 342
HinfI GANTC 2 cut(s) 512, 1072
HpaII CCGG 1 cut(s) 773
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 2 cut(s) 458, 875
Hpy188I TCNGA 5 cut(s) 86, 502, 750, 795, 1093
Hpy188III TCNNGA 4 cut(s) 46, 479, 839, 857
Hpy8I GTNNAC 2 cut(s) 458, 875
HpyAV CCTTC 4 cut(s) 426, 840, 1011, 1044
HpyCH4III ACNGT 2 cut(s) 616, 657
HpyCH4IV ACGT 1 cut(s) 629
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 86, 332, 341, 742, 973, 988
HpyF3I CTNAG 5 cut(s) 378, 408, 705, 792, 945
HpySE526I ACGT 1 cut(s) 629
Hsp92II CATG 4 cut(s) 730, 842, 1024, 1122
HspAI GCGC 1 cut(s) 824
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 3 cut(s) 403, 427, 502
LmnI GCTCC 1 cut(s) 856
Lsp1109I GCAGC 4 cut(s) 80, 790, 808, 813
LweI GCATC 8 cut(s) 55, 281, 551, 609, 657, 723, 754, 969
MabI ACCWGGT 1 cut(s) 460
MaeI CTAG 2 cut(s) 804, 857
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 1 cut(s) 863
MalI GATC 3 cut(s) 405, 429, 504
MboI GATC 3 cut(s) 403, 427, 502
MboII GAAGA 3 cut(s) 272, 702, 1004
MfeI CAATTG 2 cut(s) 971, 1082
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 2 cut(s) 379, 460
MmeI TCCRAC 2 cut(s) 52, 580
MnlI CCTC 8 cut(s) 69, 112, 223, 362, 515, 645, 864, 940
Mph1103I ATGCAT 1 cut(s) 544
MseI TTAA 5 cut(s) 92, 201, 303, 347, 641
MslI CAYNNNNRTG 2 cut(s) 285, 731
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 1 cut(s) 773
MspR9I CCNGG 5 cut(s) 114, 206, 462, 596, 774
MunI CAATTG 2 cut(s) 971, 1082
MvaI CCWGG 4 cut(s) 114, 206, 462, 596
MwoI GCNNNNNNNGC 7 cut(s) 77, 86, 332, 341, 742, 973, 988
NciI CCSGG 1 cut(s) 774
NdeII GATC 3 cut(s) 403, 427, 502
NlaIII CATG 4 cut(s) 730, 842, 1024, 1122
NlaIV GGNNCC 4 cut(s) 355, 405, 600, 1032
NmuCI GTSAC 1 cut(s) 863
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 1 cut(s) 1122
OliI CACNNNNGTG 1 cut(s) 285
PagI TCATGA 1 cut(s) 838
PciI ACATGT 1 cut(s) 1118
PfeI GAWTC 2 cut(s) 512, 1072
PkrI GCNGC 4 cut(s) 70, 780, 823, 828
PscI ACATGT 1 cut(s) 1118
PsiI TTATAA 1 cut(s) 909
Psp1406I AACGTT 1 cut(s) 629
Psp6I CCWGG 4 cut(s) 112, 204, 460, 594
PspGI CCWGG 4 cut(s) 112, 204, 460, 594
PspN4I GGNNCC 4 cut(s) 355, 405, 600, 1032
PspPI GGNCC 2 cut(s) 467, 1112
PstNI CAGNNNCTG 2 cut(s) 748, 1069
PsuI RGATCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 174, 1080
RsaNI GTAC 2 cut(s) 173, 1079
RseI CAYNNNNRTG 2 cut(s) 285, 731
SaqAI TTAA 5 cut(s) 92, 201, 303, 347, 641
SatI GCNGC 4 cut(s) 69, 779, 822, 827
Sau3AI GATC 3 cut(s) 403, 427, 502
Sau96I GGNCC 2 cut(s) 467, 1112
ScrFI CCNGG 5 cut(s) 114, 206, 462, 596, 774
SduI GDGCHC 2 cut(s) 379, 460
SexAI ACCWGGT 1 cut(s) 460
SfaNI GCATC 8 cut(s) 55, 281, 551, 609, 657, 723, 754, 969
SfcI CTRYAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 2 cut(s) 285, 731
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
SsiI CCGC 3 cut(s) 16, 294, 401
SspI AATATT 1 cut(s) 237
SspMI CTAG 2 cut(s) 804, 857
StyD4I CCNGG 5 cut(s) 112, 204, 460, 594, 772
StyI CCWWGG 2 cut(s) 166, 416
TaaI ACNGT 2 cut(s) 616, 657
TaiI ACGT 1 cut(s) 632
TaqI TCGA 1 cut(s) 430
TatI WGTACW 1 cut(s) 1078
TfiI GAWTC 2 cut(s) 512, 1072
Tru1I TTAA 5 cut(s) 92, 201, 303, 347, 641
Tru9I TTAA 5 cut(s) 92, 201, 303, 347, 641
TscAI CASTG 3 cut(s) 319, 460, 621
TseFI GTSAC 1 cut(s) 863
TseI GCWGC 4 cut(s) 68, 778, 821, 826
Tsp45I GTSAC 1 cut(s) 863
TspDTI ATGAA 1 cut(s) 948
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 3 cut(s) 319, 460, 621
VneI GTGCAC 1 cut(s) 456
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 5 cut(s) 140, 305, 529, 561, 768
XbaI TCTAGA 1 cut(s) 856
XceI RCATGY 1 cut(s) 1122
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XspI CTAG 2 cut(s) 804, 857
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.