Rorug03G0232200

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016173
Physical Location & Seq
Reverse (-)
21426995 .. 21427837
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0232200.1

Sequence Viewer

Length: 843 bp
ATGTTGACCGTGTTGTTAAGTCCATTGATAGGTATAAAGTCACACATTTCCCTCTTTGTTCCACCAATATTCTTAGCAGCATTGACGAAAAAGGTAGCCAAGGATGTGACGGCAGCACATGGTCTTCGGAGTTTAAAGCAGGTTGCTTCTGGAGCAGCTCCTTTAAGCATGAAAATCATAGAGGACTTTGTTCGGGCCCTTCCCCATGTTGATTTTATTCAGGGATATGGCTTGACTGAGACCACTGCAGTAGGAGCTCGCGGTTTTAATACTGAAAGGGATAAGAACTATTCTTCAATAGGACTTTTAGCTCCAAATATGCAAGCTAAAGTAGTAGACTGGAAAACTGGAACCCCTTTGCCTCCAAACAATTCTGGTGAGCTTTGGTTACTCGGGCCAGCGATCATGAAAGAGTACTTGAACAATGCAAAGGCAACCATGTCAACAATTGATGAAGATGGCTGGCTACATACTGGAGATATTGTGTTTTTTAATAAAGATGGGTACATATATATACATGATAGGTTGAAAGAGATTATCAAATACAAGGGCTTTCAGATTGCCCCGGCAGATTTAGAAGCGGTGCTGATTAACCATCCTGAGATAGTAGATATTGCAGTAACAGCAGCCATGGATGAAGAATGTGGAGAGGTGCCAGTGGCGTTTGTGGTTAGGAAAAATGGCAGTAAACTTTCCCGCAAAGCTGTAATGGATTACGTTGCTGGACATGTTGCTCCACACAAGAAGGTCAGGAAGGTGGTGTTTACAAGTTCAATACCCAAATCTGCGGCTGGAAAGATTCTCAGAAGGGAGCTTAGGAATTTATTGACTTCTAGACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 WW

Protein Analysis

280

Amino Acids

30.67

Weight (kDa)

9.42

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 16 - 140 4.3e-27 AMP-binding enzyme
AMP-binding_C PF13193 192 - 266 3.9e-18 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47310
fragaria_vesca FvH4_1g26970
malus_domestica MD09G1285500.v1.1
prunus_persica Prupe.3G008500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487191
rosa_multiflora Rmu_sc0012751.1_g000001 Rmu_ssc0000366.1_g000028
rosa_roxburghii Rroxscaffold_6G00395040
rosa_rugosa Rorug03G0232100 Rorug03G0232200
rosa_samantha Rh3AG280100 Rh3BG316100 Rh3CG314200 Rh3DG311500
rosa_wichuraiana Rw3G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 652
AccI GTMKAC 1 cut(s) 336
AccII CGCG 1 cut(s) 261
AciI CCGC 4 cut(s) 261, 581, 697, 788
AcsI RAATTY 1 cut(s) 820
AfaI GTAC 2 cut(s) 416, 506
AfiI CCNNNNNNNGG 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 4 cut(s) 297, 421, 529, 774
AluBI AGCT 7 cut(s) 158, 257, 311, 326, 382, 704, 814
AluI AGCT 7 cut(s) 158, 257, 311, 326, 382, 704, 814
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 2 cut(s) 195, 395
ApaI GGGCCC 1 cut(s) 199
ApeKI GCWGC 4 cut(s) 77, 113, 155, 626
ApoI RAATTY 1 cut(s) 820
AspS9I GGNCC 3 cut(s) 195, 196, 395
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 652
BanII GRGCYC 2 cut(s) 199, 259
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 4 cut(s) 89, 125, 167, 638
BccI CCATC 3 cut(s) 452, 494, 603
BceAI ACGGC 1 cut(s) 126
BcnI CCSGG 1 cut(s) 566
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 834
BfmI CTRYAG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 5 cut(s) 78, 114, 156, 627, 789
BlsI GCNGC 5 cut(s) 79, 115, 157, 628, 790
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 566
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 195, 196, 395
BmiI GGNNCC 3 cut(s) 197, 352, 654
BmrFI CCNGG 1 cut(s) 566
BpiI GAAGAC 1 cut(s) 116
BpmI CTGGAG 2 cut(s) 171, 495
Bpu10I CCTNAGC 1 cut(s) 815
BpuMI CCSGG 1 cut(s) 566
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 99, 564, 630
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 4 cut(s) 344, 352, 478, 656
BseDI CCNNGG 3 cut(s) 99, 564, 630
BseGI GGATG 3 cut(s) 109, 595, 640
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 3 cut(s) 228, 591, 817
BseNI ACTGG 4 cut(s) 344, 352, 478, 656
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 4 cut(s) 89, 125, 167, 638
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 197, 397
BshNI GGYRCC 1 cut(s) 652
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 2 cut(s) 197, 397
Bso31I GGTCTC 1 cut(s) 233
BsoBI CYCGRG 1 cut(s) 392
Bsp120I GGGCCC 1 cut(s) 195
Bsp1286I GDGCHC 2 cut(s) 199, 259
Bsp143I GATC 1 cut(s) 402
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 4 cut(s) 261, 581, 697, 788
BspANI GGCC 2 cut(s) 197, 397
BspCNI CTCAG 3 cut(s) 229, 592, 816
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 3 cut(s) 197, 352, 654
BspMAI CTGCAG 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 652
BspTNI GGTCTC 1 cut(s) 233
BsrI ACTGG 4 cut(s) 344, 352, 478, 656
BssECI CCNNGG 3 cut(s) 99, 564, 630
BssMI GATC 1 cut(s) 402
BssT1I CCWWGG 2 cut(s) 99, 630
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 4 cut(s) 259, 324, 399, 464
BstDEI CTNAG 5 cut(s) 73, 237, 600, 803, 815
BstDSI CCRYGG 1 cut(s) 630
BstF5I GGATG 3 cut(s) 109, 595, 640
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 1 cut(s) 405
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 402
BstMWI GCNNNNNNNGC 3 cut(s) 152, 254, 623
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 1 cut(s) 564
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 4 cut(s) 89, 125, 167, 638
BstV2I GAAGAC 1 cut(s) 116
BsuRI GGCC 2 cut(s) 197, 397
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 3 cut(s) 109, 595, 640
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 663
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 4 cut(s) 259, 324, 399, 464
CciI TCATGA 1 cut(s) 405
Cfr13I GGNCC 3 cut(s) 195, 196, 395
Csp6I GTAC 2 cut(s) 415, 505
CviAII CATG 8 cut(s) 119, 169, 206, 406, 439, 518, 631, 728
CviQI GTAC 2 cut(s) 415, 505
DdeI CTNAG 5 cut(s) 73, 237, 600, 803, 815
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
DraI TTTAAA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 99, 630
Eco24I GRGCYC 2 cut(s) 199, 259
Eco31I GGTCTC 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 99, 630
EcoT38I GRGCYC 2 cut(s) 199, 259
ErhI CCWWGG 2 cut(s) 99, 630
FaeI CATG 8 cut(s) 122, 172, 209, 409, 442, 521, 634, 731
FatI CATG 8 cut(s) 118, 168, 205, 405, 438, 517, 630, 727
FauI CCCGC 1 cut(s) 704
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 5 cut(s) 78, 114, 156, 627, 789
FokI GGATG 3 cut(s) 116, 582, 647
FriOI GRGCYC 2 cut(s) 199, 259
Fsp4HI GCNGC 5 cut(s) 78, 114, 156, 627, 789
FspBI CTAG 1 cut(s) 834
GluI GCNGC 5 cut(s) 78, 114, 156, 627, 789
GsuI CTGGAG 2 cut(s) 171, 495
HaeIII GGCC 2 cut(s) 197, 397
HapII CCGG 1 cut(s) 566
Hin1II CATG 8 cut(s) 122, 172, 209, 409, 442, 521, 634, 731
HincII GTYRAC 2 cut(s) 6, 444
HindII GTYRAC 2 cut(s) 6, 444
HinfI GANTC 2 cut(s) 799, 837
HpaII CCGG 1 cut(s) 566
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 5 cut(s) 6, 337, 444, 689, 765
Hpy188I TCNGA 3 cut(s) 129, 558, 806
Hpy188III TCNNGA 5 cut(s) 150, 406, 599, 751, 834
Hpy8I GTNNAC 5 cut(s) 6, 337, 444, 689, 765
HpyAV CCTTC 4 cut(s) 209, 739, 748, 801
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 4 cut(s) 248, 322, 428, 617
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 254, 623
HpyF3I CTNAG 5 cut(s) 73, 237, 600, 803, 815
HpySE526I ACGT 1 cut(s) 717
Hsp92II CATG 8 cut(s) 122, 172, 209, 409, 442, 521, 634, 731
Kzo9I GATC 1 cut(s) 402
LmnI GCTCC 6 cut(s) 152, 163, 254, 316, 739, 811
Lsp1109I GCAGC 4 cut(s) 89, 125, 167, 638
MaeI CTAG 1 cut(s) 834
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 4 cut(s) 39, 106, 387, 619
MalI GATC 1 cut(s) 404
MboI GATC 1 cut(s) 402
MboII GAAGA 4 cut(s) 116, 285, 467, 650
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 2 cut(s) 199, 259
MluCI AATT 3 cut(s) 370, 447, 820
MlyI GAGTC 1 cut(s) 831
MnlI CCTC 4 cut(s) 62, 175, 372, 643
MseI TTAA 6 cut(s) 17, 134, 164, 267, 492, 591
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 566
MunI CAATTG 1 cut(s) 447
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 152, 254, 623
NciI CCSGG 1 cut(s) 566
NcoI CCATGG 1 cut(s) 630
NdeII GATC 1 cut(s) 402
NlaIII CATG 8 cut(s) 122, 172, 209, 409, 442, 521, 634, 731
NlaIV GGNNCC 3 cut(s) 197, 352, 654
NmuCI GTSAC 2 cut(s) 39, 106
NspI RCATGY 1 cut(s) 731
PagI TCATGA 1 cut(s) 405
PciI ACATGT 1 cut(s) 727
PfeI GAWTC 1 cut(s) 799
PkrI GCNGC 5 cut(s) 79, 115, 157, 628, 790
PleI GAGTC 1 cut(s) 831
PpsI GAGTC 1 cut(s) 831
PscI ACATGT 1 cut(s) 727
Psp124BI GAGCTC 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 197, 352, 654
PspOMI GGGCCC 1 cut(s) 195
PspPI GGNCC 3 cut(s) 195, 196, 395
PstI CTGCAG 1 cut(s) 250
RsaI GTAC 2 cut(s) 416, 506
RsaNI GTAC 2 cut(s) 415, 505
SacI GAGCTC 1 cut(s) 259
SaqAI TTAA 6 cut(s) 17, 134, 164, 267, 492, 591
SatI GCNGC 5 cut(s) 78, 114, 156, 627, 789
Sau3AI GATC 1 cut(s) 402
Sau96I GGNCC 3 cut(s) 195, 196, 395
ScaI AGTACT 1 cut(s) 416
SchI GAGTC 1 cut(s) 831
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 2 cut(s) 199, 259
SfcI CTRYAG 1 cut(s) 246
Sse9I AATT 3 cut(s) 370, 447, 820
SsiI CCGC 4 cut(s) 261, 581, 697, 788
SspI AATATT 1 cut(s) 69
SspMI CTAG 1 cut(s) 834
SstI GAGCTC 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 2 cut(s) 99, 630
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 720
TasI AATT 3 cut(s) 370, 447, 820
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 791
TfiI GAWTC 1 cut(s) 799
Tru1I TTAA 6 cut(s) 17, 134, 164, 267, 492, 591
Tru9I TTAA 6 cut(s) 17, 134, 164, 267, 492, 591
TscAI CASTG 2 cut(s) 250, 663
TseFI GTSAC 2 cut(s) 39, 106
TseI GCWGC 4 cut(s) 77, 113, 155, 626
Tsp45I GTSAC 2 cut(s) 39, 106
TspDTI ATGAA 4 cut(s) 185, 422, 468, 651
TspRI CASTG 2 cut(s) 250, 663
XapI RAATTY 1 cut(s) 820
XbaI TCTAGA 1 cut(s) 833
XceI RCATGY 1 cut(s) 731
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 1 cut(s) 834
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.