Rh3AG280100

Flowering time control protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
32617771 .. 32644129
26359 bp
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UTR
Exon/CDS
Intron
Rh3AG280100.1

Sequence Viewer

Length: 1548 bp
ATGGATTGGAAGCTAAGCAAACATAGGTATCAAGGTTCAGCGTTAGAGCCTGGGAAGCTGGATTGGCACGGAGACCCACAGCAGCAGTCCCAGCACCATGGGACTTGCTCTTCCTCTTCTGCTTGGCCACCCCTCGATCCCCACCACAACCCTCATAACATTCCCCACCATCCTATTCCTCCTCACCAGCTCGACTACCATCCCCACCACCACGATCCCAACCACGCCACTGGCTTCGCCAATCCGGTGCCGTTTTCTGTACGCAAAAGGGCTTGGCAACACTCTAATCAAGGACTTCCTAGAGATAGCTTTGAAAACCCCAATCATGCTAAGCTTTATGTTGCACAAATTTCAAGAACAGCCACGGAGGACGTTATTCGCTCCTTGTTTGGACAATTTGGGGACATAGTCGAGGTTGTAATGTTGAAGGATAAGCGGACTGGCTTCCAACAAGGAAATTGTTTCGTGAAGTATTCAACATTAGATGCAGCAGAGAGGGCTATCAGAGCTTTAAATAGTCAGCATTATTTTCCTGGGGAGGCAAACCCTATCATAGTCAAATTTGCTGACGGGGAAAGGGAACGCCTTGGGGTACAAGACAGATTGTATGTTTGTGGCATTAACCTGGAAGCTTCAAATAAAGACATTGAGGAAATATTTTCACCTTATGGTCTTGTTGAAGATATCTACATTTTGAAGCACAATCGTGGATGCGGGTTTGTTAAATTTTCCAGTGGAGATATGGCTGTGCAAGCAATCAAAGCTTTAAATGGAACCTTTATTATGAGAGGTTGTGCTCAGCCATTGATTGTTCGTTTTGCGGATCCTAAGAAACCAAGGGAAATAGATCGAAGGGGTAATTATGTATTTAGCAGTGCACCTGGTGGTCCGTACTCTCACGAACCAGTTAGGGTAGTATCTGATCATAGTGATTCCATTGGAGGACAAAATTTTCTAAATGCATCTTATCCTGTCCAACAAATTTCACAACCCCCTATTCCCTATTTGGCAAACCAGGAACCACAGGCTTCTACAGTGATGCAACCAACGTTTCCTCCATTAAGACCACCTTTACAGTTGTGCAGGATGCCTATACAACAAACACAGAATACACAAAGAAGTTCTCAGTCTTCTCAAGTAGCAGTCACGGAGATGCAGAAACAGCATCTGACACAATCATCTGGGCAAATTCTGGGGCAGCAACAGAGTTCTCAGACATTTTCTAGCAATTCTACTTCAGCTGCGCTGCCTTCAAGTCATGAGATAACTGCTCCTCTAGAGTGTGACTGGAGTGAACATACCTGCCCTGATGGATACAAGTATTATTATAATTGTGAAACTTGTGAGAGCAGATGGGACAAACCTGAGGAGTTTGCTTCATTTGAGCAACAATTGCAGATGCAAACACAGCCGAATAATCCTTCTCATCATCTTCAATCCGTGTCATTGGTTCCTTCTACGCAAATAGTTTGTCAAAATCAGCAGGAACTGAATCAAGTACAATTGCAGTCTGAAACAAGTCCTGTTGTTGGCCCAACATGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

57.81

Weight (kDa)

6.35

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 112 - 176 1.8e-14 RNA recognition motif
RRM_1 PF00076 202 - 262 1.2e-12 RNA recognition motif
WW PF00397 426 - 455 1.2e-09 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016173)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1329
Acc36I ACCTGC 1 cut(s) 1310
AccB1I GGYRCC 1 cut(s) 247
AciI CCGC 3 cut(s) 436, 714, 821
AclI AACGTT 1 cut(s) 1049
AclWI GGATC 4 cut(s) 131, 209, 818, 831
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 6 cut(s) 348, 560, 725, 949, 981, 1188
AcuI CTGAAG 1 cut(s) 1221
AdeI CACNNNGTG 1 cut(s) 884
AfaI GTAC 4 cut(s) 261, 594, 893, 1500
AfiI CCNNNNNNNGG 1 cut(s) 1529
AflIII ACRYGT 1 cut(s) 1538
AgsI TTSAA 9 cut(s) 314, 354, 427, 477, 636, 680, 697, 1254, 1436
AjnI CCWGG 5 cut(s) 49, 532, 624, 880, 1014
AleI CACNNNNGTG 1 cut(s) 705
AluBI AGCT 9 cut(s) 13, 58, 190, 309, 334, 509, 632, 764, 1241
AluI AGCT 9 cut(s) 13, 58, 190, 309, 334, 509, 632, 764, 1241
Alw21I GWGCWC 2 cut(s) 799, 880
Alw26I GTCTC 1 cut(s) 66
Alw44I GTGCAC 1 cut(s) 876
AlwI GGATC 4 cut(s) 131, 209, 818, 831
AlwNI CAGNNNCTG 2 cut(s) 1168, 1489
AoxI GGCC 2 cut(s) 125, 1531
ApaLI GTGCAC 1 cut(s) 876
ApeKI GCWGC 5 cut(s) 82, 488, 1198, 1241, 1246
ApoI RAATTY 6 cut(s) 348, 560, 725, 949, 981, 1188
ArsI GACNNNNNNTTYG 2 cut(s) 1456, 1488
AspLEI GCGC 1 cut(s) 1246
AspS9I GGNCC 2 cut(s) 887, 1532
AsuHPI GGTGA 2 cut(s) 176, 654
AvaII GGWCC 1 cut(s) 887
AxyI CCTNAGG 1 cut(s) 1365
BaeGI GKGCMC 1 cut(s) 880
BaeI ACNNNNGTAYC 2 cut(s) 11, 44
BalI TGGCCA 1 cut(s) 127
BamHI GGATCC 1 cut(s) 823
BanI GGYRCC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 1122
Bbv12I GWGCWC 2 cut(s) 799, 880
BbvI GCAGC 5 cut(s) 94, 500, 1210, 1228, 1233
BccI CCATC 4 cut(s) 177, 207, 1304, 1347
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 5 cut(s) 51, 534, 626, 882, 1016
BciVI GTATCC 1 cut(s) 1307
BclI TGATCA 1 cut(s) 922
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 3 cut(s) 300, 1224, 1277
BfmI CTRYAG 1 cut(s) 1032
BfuAI ACCTGC 1 cut(s) 1310
BfuI GTATCC 1 cut(s) 1307
BisI GCNGC 5 cut(s) 83, 489, 1199, 1242, 1247
BlpI GCTNAGC 3 cut(s) 14, 330, 798
BlsI GCNGC 5 cut(s) 84, 490, 1200, 1243, 1248
Bme1390I CCNGG 5 cut(s) 51, 534, 626, 882, 1016
Bme18I GGWCC 1 cut(s) 887
BmgT120I GGNCC 2 cut(s) 887, 1532
BmiI GGNNCC 5 cut(s) 249, 775, 825, 1020, 1452
BmrFI CCNGG 5 cut(s) 51, 534, 626, 882, 1016
BmsI GCATC 8 cut(s) 475, 701, 971, 1029, 1077, 1143, 1174, 1389
BpiI GAAGAC 1 cut(s) 1122
BpmI CTGGAG 1 cut(s) 1309
Bpu1102I GCTNAGC 3 cut(s) 14, 330, 798
BpuEI CTTGAG 1 cut(s) 1119
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 6 cut(s) 50, 97, 363, 533, 586, 836
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 1039, 1069
Bsc4I CCNNNNNNNGG 1 cut(s) 1529
Bse1I ACTGG 5 cut(s) 235, 445, 732, 905, 1292
Bse21I CCTNAGG 1 cut(s) 1365
BseBI CCWGG 5 cut(s) 51, 534, 626, 882, 1016
BseDI CCNNGG 6 cut(s) 50, 97, 363, 533, 586, 836
BseGI GGATG 4 cut(s) 169, 199, 716, 1092
BseLI CCNNNNNNNGG 1 cut(s) 1529
BseMII CTCAG 4 cut(s) 812, 1139, 1226, 1356
BseNI ACTGG 5 cut(s) 235, 445, 732, 905, 1292
BseRI GAGGAG 3 cut(s) 171, 1263, 1382
BseSI GKGCMC 1 cut(s) 880
BseXI GCAGC 5 cut(s) 94, 500, 1210, 1228, 1233
BseYI CCCAGC 1 cut(s) 90
BsgI GTGCAG 1 cut(s) 1102
BshFI GGCC 2 cut(s) 127, 1533
BshNI GGYRCC 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 799, 880
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 4 cut(s) 73, 115, 416, 1370
BslI CCNNNNNNNGG 1 cut(s) 1529
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 4 cut(s) 73, 115, 416, 1370
BsnI GGCC 2 cut(s) 127, 1533
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 799, 880
Bsp143I GATC 5 cut(s) 136, 214, 823, 847, 922
Bsp1720I GCTNAGC 3 cut(s) 14, 330, 798
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 3 cut(s) 436, 714, 821
BspANI GGCC 2 cut(s) 127, 1533
BspCNI CTCAG 4 cut(s) 811, 1138, 1225, 1357
BspHI TCATGA 1 cut(s) 1258
BspLI GGNNCC 5 cut(s) 249, 775, 825, 1020, 1452
BspMI ACCTGC 1 cut(s) 1310
BspPI GGATC 4 cut(s) 131, 209, 818, 831
BspQI GCTCTTC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 66
BsrI ACTGG 5 cut(s) 235, 445, 732, 905, 1292
BssECI CCNNGG 6 cut(s) 50, 97, 363, 533, 586, 836
BssMI GATC 5 cut(s) 136, 214, 823, 847, 922
BssT1I CCWWGG 3 cut(s) 97, 586, 836
Bst2UI CCWGG 5 cut(s) 51, 534, 626, 882, 1016
Bst4CI ACNGT 2 cut(s) 1036, 1077
Bst6I CTCTTC 2 cut(s) 115, 121
BstAPI GCANNNNNTGC 1 cut(s) 1393
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 7 cut(s) 14, 330, 798, 828, 1125, 1212, 1365
BstDSI CCRYGG 2 cut(s) 97, 363
BstF5I GGATG 4 cut(s) 169, 199, 716, 1092
BstHHI GCGC 1 cut(s) 1246
BstKTI GATC 5 cut(s) 139, 217, 826, 850, 925
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 5 cut(s) 136, 214, 823, 847, 922
BstNI CCWGG 5 cut(s) 51, 534, 626, 882, 1016
BstNSI RCATGY 1 cut(s) 1542
BstSCI CCNGG 5 cut(s) 49, 532, 624, 880, 1014
BstSFI CTRYAG 1 cut(s) 1032
BstSLI GKGCMC 1 cut(s) 880
BstV1I GCAGC 5 cut(s) 94, 500, 1210, 1228, 1233
BstV2I GAAGAC 1 cut(s) 1122
BstX2I RGATCY 1 cut(s) 823
BstXI CCANNNNNNTGG 2 cut(s) 98, 230
BstYI RGATCY 1 cut(s) 823
Bsu36I CCTNAGG 1 cut(s) 1365
BsuI GTATCC 1 cut(s) 1307
BsuRI GGCC 2 cut(s) 127, 1533
BtgI CCRYGG 2 cut(s) 97, 363
BtsCI GGATG 4 cut(s) 169, 199, 716, 1092
BtsI GCAGTG 1 cut(s) 880
BtsIMutI CAGTG 4 cut(s) 228, 739, 880, 1041
BveI ACCTGC 1 cut(s) 1310
Cac8I GCNNGC 1 cut(s) 753
CaiI CAGNNNCTG 2 cut(s) 1168, 1489
CciI TCATGA 1 cut(s) 1258
CfoI GCGC 1 cut(s) 1246
Cfr13I GGNCC 2 cut(s) 887, 1532
CsiI ACCWGGT 1 cut(s) 880
Csp6I GTAC 4 cut(s) 260, 593, 892, 1499
CviAII CATG 4 cut(s) 98, 326, 1259, 1539
CviQI GTAC 4 cut(s) 260, 593, 892, 1499
DdeI CTNAG 7 cut(s) 14, 330, 798, 828, 1125, 1212, 1365
DpnI GATC 5 cut(s) 138, 216, 825, 849, 924
DpnII GATC 5 cut(s) 136, 214, 823, 847, 922
DraI TTTAAA 2 cut(s) 513, 768
DraIII CACNNNGTG 1 cut(s) 884
EaeI YGGCCR 1 cut(s) 125
Eam1104I CTCTTC 2 cut(s) 115, 121
EarI CTCTTC 2 cut(s) 115, 121
Eco130I CCWWGG 3 cut(s) 97, 586, 836
Eco31I GGTCTC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 685
Eco47I GGWCC 1 cut(s) 887
Eco57I CTGAAG 1 cut(s) 1221
Eco81I CCTNAGG 1 cut(s) 1365
EcoRII CCWGG 5 cut(s) 49, 532, 624, 880, 1014
EcoRV GATATC 1 cut(s) 685
EcoT14I CCWWGG 3 cut(s) 97, 586, 836
EcoT22I ATGCAT 1 cut(s) 964
ErhI CCWWGG 3 cut(s) 97, 586, 836
FaeI CATG 4 cut(s) 101, 329, 1262, 1542
FalI AAGNNNNNCTT 2 cut(s) 1054, 1086
FaqI GGGAC 4 cut(s) 73, 115, 416, 1370
FatI CATG 4 cut(s) 97, 325, 1258, 1538
FauI CCCGC 1 cut(s) 707
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 5 cut(s) 83, 489, 1199, 1242, 1247
FokI GGATG 4 cut(s) 156, 186, 723, 1099
Fsp4HI GCNGC 5 cut(s) 83, 489, 1199, 1242, 1247
FspBI CTAG 3 cut(s) 300, 1224, 1277
GlaI GCGC 1 cut(s) 1245
GluI GCNGC 5 cut(s) 83, 489, 1199, 1242, 1247
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 1309
HaeIII GGCC 2 cut(s) 127, 1533
HapII CCGG 1 cut(s) 245
HhaI GCGC 1 cut(s) 1246
Hin1II CATG 4 cut(s) 101, 329, 1262, 1542
Hin6I GCGC 1 cut(s) 1244
HinP1I GCGC 1 cut(s) 1244
HindIII AAGCTT 3 cut(s) 332, 630, 762
HinfI GANTC 2 cut(s) 932, 1492
HpaII CCGG 1 cut(s) 245
HphI GGTGA 2 cut(s) 176, 654
Hpy166II GTNNAC 2 cut(s) 878, 1295
Hpy188I TCNGA 5 cut(s) 506, 922, 1170, 1215, 1513
Hpy188III TCNNGA 5 cut(s) 354, 466, 899, 1259, 1277
Hpy8I GTNNAC 2 cut(s) 878, 1295
HpyAV CCTTC 5 cut(s) 421, 846, 1260, 1431, 1464
HpyCH4III ACNGT 2 cut(s) 1036, 1077
HpyCH4IV ACGT 2 cut(s) 372, 1049
HpyF3I CTNAG 7 cut(s) 14, 330, 798, 828, 1125, 1212, 1365
HpySE526I ACGT 2 cut(s) 372, 1049
Hsp92II CATG 4 cut(s) 101, 329, 1262, 1542
HspAI GCGC 1 cut(s) 1244
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 5 cut(s) 136, 214, 823, 847, 922
LguI GCTCTTC 1 cut(s) 115
LmnI GCTCC 2 cut(s) 386, 1276
Lsp1109I GCAGC 5 cut(s) 94, 500, 1210, 1228, 1233
LweI GCATC 8 cut(s) 475, 701, 971, 1029, 1077, 1143, 1174, 1389
MabI ACCWGGT 1 cut(s) 880
MaeI CTAG 3 cut(s) 300, 1224, 1277
MaeII ACGT 2 cut(s) 372, 1049
MaeIII GTNAC 2 cut(s) 1144, 1283
MalI GATC 5 cut(s) 138, 216, 825, 849, 924
MboI GATC 5 cut(s) 136, 214, 823, 847, 922
MboII GAAGA 5 cut(s) 102, 108, 692, 1122, 1424
MfeI CAATTG 2 cut(s) 1391, 1502
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 2 cut(s) 799, 880
MlsI TGGCCA 1 cut(s) 127
MluNI TGGCCA 1 cut(s) 127
MmeI TCCRAC 2 cut(s) 472, 1000
Mox20I TGGCCA 1 cut(s) 127
Mph1103I ATGCAT 1 cut(s) 964
MscI TGGCCA 1 cut(s) 127
MseI TTAA 5 cut(s) 512, 621, 723, 767, 1061
MslI CAYNNNNRTG 2 cut(s) 705, 1151
Msp20I TGGCCA 1 cut(s) 127
MspA1I CMGCKG 1 cut(s) 1241
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 5 cut(s) 51, 534, 626, 882, 1016
MunI CAATTG 2 cut(s) 1391, 1502
MvaI CCWGG 5 cut(s) 51, 534, 626, 882, 1016
NcoI CCATGG 1 cut(s) 97
NdeII GATC 5 cut(s) 136, 214, 823, 847, 922
NlaIII CATG 4 cut(s) 101, 329, 1262, 1542
NlaIV GGNNCC 5 cut(s) 249, 775, 825, 1020, 1452
NmuCI GTSAC 2 cut(s) 1144, 1283
NsiI ATGCAT 1 cut(s) 964
NspI RCATGY 1 cut(s) 1542
OliI CACNNNNGTG 1 cut(s) 705
PagI TCATGA 1 cut(s) 1258
PciI ACATGT 1 cut(s) 1538
PciSI GCTCTTC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 932, 1492
PflFI GACNNNGTC 1 cut(s) 407
PkrI GCNGC 5 cut(s) 84, 490, 1200, 1243, 1248
PscI ACATGT 1 cut(s) 1538
PsiI TTATAA 1 cut(s) 1329
Psp1406I AACGTT 1 cut(s) 1049
Psp6I CCWGG 5 cut(s) 49, 532, 624, 880, 1014
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 5 cut(s) 49, 532, 624, 880, 1014
PspN4I GGNNCC 5 cut(s) 249, 775, 825, 1020, 1452
PspPI GGNCC 2 cut(s) 887, 1532
PstNI CAGNNNCTG 2 cut(s) 1168, 1489
PsuI RGATCY 1 cut(s) 823
PsyI GACNNNGTC 1 cut(s) 407
PvuII CAGCTG 1 cut(s) 1241
RsaI GTAC 4 cut(s) 261, 594, 893, 1500
RsaNI GTAC 4 cut(s) 260, 593, 892, 1499
RseI CAYNNNNRTG 2 cut(s) 705, 1151
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 5 cut(s) 512, 621, 723, 767, 1061
SatI GCNGC 5 cut(s) 83, 489, 1199, 1242, 1247
Sau3AI GATC 5 cut(s) 136, 214, 823, 847, 922
Sau96I GGNCC 2 cut(s) 887, 1532
ScrFI CCNGG 5 cut(s) 51, 534, 626, 882, 1016
SduI GDGCHC 2 cut(s) 799, 880
SexAI ACCWGGT 1 cut(s) 880
SfaNI GCATC 8 cut(s) 475, 701, 971, 1029, 1077, 1143, 1174, 1389
SfcI CTRYAG 1 cut(s) 1032
SinI GGWCC 1 cut(s) 887
SmiMI CAYNNNNRTG 2 cut(s) 705, 1151
SmlI CTYRAG 1 cut(s) 1134
SmoI CTYRAG 1 cut(s) 1134
SsiI CCGC 3 cut(s) 436, 714, 821
SspI AATATT 1 cut(s) 657
SspMI CTAG 3 cut(s) 300, 1224, 1277
StyD4I CCNGG 5 cut(s) 49, 532, 624, 880, 1014
StyI CCWWGG 3 cut(s) 97, 586, 836
TaaI ACNGT 2 cut(s) 1036, 1077
TaiI ACGT 2 cut(s) 375, 1052
TaqI TCGA 4 cut(s) 135, 192, 411, 850
TatI WGTACW 1 cut(s) 1498
TfiI GAWTC 2 cut(s) 932, 1492
Tru1I TTAA 5 cut(s) 512, 621, 723, 767, 1061
Tru9I TTAA 5 cut(s) 512, 621, 723, 767, 1061
TscAI CASTG 4 cut(s) 235, 739, 880, 1041
TseFI GTSAC 2 cut(s) 1144, 1283
TseI GCWGC 5 cut(s) 82, 488, 1198, 1241, 1246
Tsp45I GTSAC 2 cut(s) 1144, 1283
TspDTI ATGAA 1 cut(s) 1368
TspGWI ACGGA 5 cut(s) 84, 380, 879, 1163, 1429
TspRI CASTG 4 cut(s) 235, 739, 880, 1041
Tth111I GACNNNGTC 1 cut(s) 407
VneI GTGCAC 1 cut(s) 876
VpaK11BI GGWCC 1 cut(s) 887
XapI RAATTY 6 cut(s) 348, 560, 725, 949, 981, 1188
XbaI TCTAGA 1 cut(s) 1276
XceI RCATGY 1 cut(s) 1542
XcmI CCANNNNNNNNNTGG 1 cut(s) 739
XspI CTAG 3 cut(s) 300, 1224, 1277
Zsp2I ATGCAT 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.