Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003006

Physical Location & Seq

Genomic Coordinates Reverse (-)

19590816 .. 19594014

Gene Structure 3199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGGTATTATCAGATTTCAAATCCTGAATCCGACGAGGATTTGTAGGTCTACTATATATTATATGTCTTGCCGTTATCTGCCATCATCATCATCATCATCATCACCACTCCGAGTATCTTCTTCTTCATCGCAAAAACCTAGTTTCGATTTCTCCAGAAGGTGGCATTTTGGTCACCCTGATCATCACCAGCAATATCAAAAGCCTGGAGAAGAAGGGGAGAAGATATTCCGGCTAGGTCTCACCGCAGATATAGGTTTATCTGTCGCAAAAGCTCTCACCGGTTATCTCTGCGGCAGCACCGCCATTATCGCCGATGCTGCTCATTCCGTTTCCGATGTGGTTCTAAGTGGTGTTGCTCTAGTGTCTTACAGAGCTGCAAATGTTCCCAAGGACAAAGAACATCCTTATGGTCATGGTAAATTTGAAACGCTTGGAGCACTTGGCATCTCTGCCATGCTTTTGGCTACTGGCTCTGGTATTGCCTGGCATGCTTTAGACCTTTTATCTATTGCACTGTCCGCAGCTCCTGAGGTAATTCATAGTGGACATCATCACGGCATTGATATGAATCATCCCATTCTCGCTTTGACTGTTACTATTGCTTCCATTTCTATCAAAGAAGGGCTTTATTGGATCACAAAACGAGCAGGTGAAAAACAAGGGAGTGGTTTGATGATGGCAAATGCTTGGCATCATCGATCAGATGCTATTTCTTCTCTAGTTGCACTTGTTGGAGTTGGAGGTTCTATTCTCGGAGTTAATTTTTTAGATCCTCTAGCTGGCCTTGTTGTCTCGACAATGATTGTCAATGCCGGACTGAAAACAGGACACCAAAGTATCTTGGAACTCGTGGATGCTGCTATACCAGCTCAGCAATTAGAGCCAATAAGACAAACCATATTACAGGTTGAAGGAGTGAAGGGATGTCATCGGCTAAGGGGTAGGAGAGCTGGTTCATCGTTGTATCTTGATGTACACATTGTGGTAGATCCTTTTTCCAGTGTGAGTGTCGCACATGAGGTAGGAGAATATGTACGGAGACAGATTAATTTGAACCATCCTGAAGTGTCCGAAGTTTTTATTCATATAGATCCAGCCTTTTTACAGTTTTCTTGTAGCACCAAGGATCATGACAGTATAACGAAGGAAAGTAACATCTGCCAAGAGATTAAACATGTTGAAGCCACTGTCTCAGACATTTTTTCGTCGCAGTTGTCTGAGAAATTGACGATCAAACGAATTACACCCCACTTGTTACATAGCAAGATCTTGCTCCAAATCGTAGTCGCCATGCCATCAACCATGTCCATACAGGACGTCATGATAGCTGCTGAACATGCAGAGAAAGAGATTCTGAAGGCAGCCCCAAATGTGGCTCGTGTCAGCATTCAGCTTAGTCTTAACTCCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

471

Amino Acids

51.03

Weight (kDa)

7.15

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	80 - 285	1.4e-37	Cation efflux transmembrane domain
ZT_dimer	PF16916	291 - 366	1.4e-20	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47830 AT2G47830
fragaria_vesca	FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110
malus_domestica	MD03G1284200.v1.1
prunus_persica	Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1
pyrus_communis	pycom03g22500
rosa_chinensis	RchiOBHm_Chr6g0293181
rosa_laevigata	RLG00000011969
rosa_multiflora	Rmu_co8409675.1_g000001 Rmu_sc0014786.1_g000003 Rmu_sc0039259.1_g000001 Rmu_sc0042811.1_g000001 Rmu_sc0042818.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174370
rosa_rugosa	Rorug06G0233200 Rorug06G0233300
rosa_samantha	Rh6AG345800 Rh6BG353600 Rh6CG360000 Rh6DG346400
rosa_wichuraiana	Rw6G030140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	641
AatII	GACGTC	1 cut(s)	1323
Acc36I	ACCTGC	1 cut(s)	641
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	4 cut(s)	246, 294, 303, 522
AclWI	GGATC	5 cut(s)	644, 767, 986, 1088, 1137
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	2 cut(s)	1086, 1379
AcyI	GRCGYC	1 cut(s)	1320
AdeI	CACNNNGTG	1 cut(s)	985
AfaI	GTAC	2 cut(s)	978, 1038
AfiI	CCNNNNNNNGG	3 cut(s)	162, 782, 1375
AflIII	ACRYGT	1 cut(s)	1177
AgeI	ACCGGT	1 cut(s)	281
AgsI	TTSAA	5 cut(s)	20, 428, 914, 1057, 1184
AjnI	CCWGG	2 cut(s)	205, 485
AloI	GAACNNNNNNTCC	2 cut(s)	940, 972
AluBI	AGCT	8 cut(s)	275, 377, 527, 782, 872, 953, 1331, 1396
AluI	AGCT	8 cut(s)	275, 377, 527, 782, 872, 953, 1331, 1396
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	4 cut(s)	245, 799, 1036, 1198
AlwI	GGATC	5 cut(s)	644, 767, 986, 1088, 1137
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	1 cut(s)	784
ApeKI	GCWGC	7 cut(s)	297, 320, 377, 524, 860, 1331, 1364
ApoI	RAATTY	1 cut(s)	422
AseI	ATTAAT	1 cut(s)	1050
AsiGI	ACCGGT	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	227
AsuHPI	GGTGA	6 cut(s)	96, 167, 179, 235, 271, 665
AxyI	CCTNAGG	1 cut(s)	531
BaeI	ACNNNNGTAYC	2 cut(s)	823, 856
BauI	CACGAG	2 cut(s)	851, 1380
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	7 cut(s)	307, 309, 364, 536, 847, 1318, 1376
BccI	CCATC	4 cut(s)	91, 673, 1068, 1306
BceAI	ACGGC	2 cut(s)	57, 574
BciT130I	CCWGG	2 cut(s)	207, 487
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	4 cut(s)	245, 799, 1036, 1198
BfaI	CTAG	5 cut(s)	141, 236, 362, 722, 779
BfuAI	ACCTGC	1 cut(s)	641
BglII	AGATCT	1 cut(s)	1269
BisI	GCNGC	8 cut(s)	295, 298, 321, 378, 525, 861, 1332, 1365
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	8 cut(s)	296, 299, 322, 379, 526, 862, 1333, 1366
Bme1390I	CCNGG	2 cut(s)	207, 487
BmrFI	CCNGG	2 cut(s)	207, 487
BmsI	GCATC	5 cut(s)	307, 456, 697, 703, 847
BpmI	CTGGAG	2 cut(s)	139, 228
Bpu10I	CCTNAGC	1 cut(s)	938
Bpu1102I	GCTNAGC	1 cut(s)	873
Bsa29I	ATCGAT	1 cut(s)	700
BsaBI	GATNNNNATC	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	1320
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	390, 1125
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	4 cut(s)	940, 970, 1020, 1050
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 782, 1375
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	475, 1002
Bse21I	CCTNAGG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	207, 487
BseCI	ATCGAT	1 cut(s)	700
BseDI	CCNNGG	2 cut(s)	390, 1125
BseGI	GGATG	5 cut(s)	403, 574, 862, 932, 1060
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	3 cut(s)	162, 782, 1375
BseMII	CTCAG	4 cut(s)	522, 887, 1209, 1212
BseNI	ACTGG	2 cut(s)	475, 1002
BseXI	GCAGC	7 cut(s)	307, 309, 364, 536, 847, 1318, 1376
BshFI	GGCC	1 cut(s)	786
BshTI	ACCGGT	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	700
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	3 cut(s)	232, 282, 816
BslI	CCNNNNNNNGG	3 cut(s)	162, 782, 1375
BsmAI	GTCTC	4 cut(s)	245, 799, 1036, 1198
BsmI	GAATGC	1 cut(s)	1389
BsnI	GGCC	1 cut(s)	786
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp1407I	TGTACA	1 cut(s)	976
Bsp143I	GATC	9 cut(s)	181, 636, 701, 772, 991, 1093, 1129, 1233, 1269
Bsp1720I	GCTNAGC	1 cut(s)	873
BspACI	CCGC	4 cut(s)	246, 294, 303, 522
BspANI	GGCC	1 cut(s)	786
BspCNI	CTCAG	4 cut(s)	523, 886, 1208, 1213
BspDI	ATCGAT	1 cut(s)	700
BspHI	TCATGA	2 cut(s)	1132, 1323
BspMI	ACCTGC	1 cut(s)	641
BspPI	GGATC	5 cut(s)	644, 767, 986, 1088, 1137
BspTNI	GGTCTC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	976
BsrI	ACTGG	2 cut(s)	475, 1002
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	390, 1125
BssMI	GATC	9 cut(s)	181, 636, 701, 772, 991, 1093, 1129, 1233, 1269
BssNI	GRCGYC	1 cut(s)	1320
BssSI	CACGAG	2 cut(s)	851, 1380
BssT1I	CCWWGG	2 cut(s)	390, 1125
Bst2BI	CACGAG	2 cut(s)	851, 1380
Bst2UI	CCWGG	2 cut(s)	207, 487
Bst4CI	ACNGT	5 cut(s)	519, 595, 1110, 1139, 1192
BstACI	GRCGYC	1 cut(s)	1320
BstAUI	TGTACA	1 cut(s)	976
BstC8I	GCNNGC	2 cut(s)	492, 784
BstDEI	CTNAG	7 cut(s)	347, 531, 873, 938, 1195, 1221, 1397
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	5 cut(s)	403, 574, 862, 932, 1060
BstKTI	GATC	9 cut(s)	184, 639, 704, 775, 994, 1096, 1132, 1236, 1272
BstMAI	GTCTC	4 cut(s)	245, 799, 1036, 1198
BstMBI	GATC	9 cut(s)	181, 636, 701, 772, 991, 1093, 1129, 1233, 1269
BstMWI	GCNNNNNNNGC	7 cut(s)	311, 320, 491, 521, 869, 883, 1340
BstNI	CCWGG	2 cut(s)	207, 487
BstNSI	RCATGY	3 cut(s)	494, 1181, 1343
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	205, 485
BstV1I	GCAGC	7 cut(s)	307, 309, 364, 536, 847, 1318, 1376
BstX2I	RGATCY	4 cut(s)	772, 991, 1093, 1269
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	4 cut(s)	772, 991, 1093, 1269
Bsu15I	ATCGAT	1 cut(s)	700
Bsu36I	CCTNAGG	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	786
BsuTUI	ATCGAT	1 cut(s)	700
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	5 cut(s)	403, 574, 862, 932, 1060
BtsIMutI	CAGTG	3 cut(s)	515, 1009, 1188
BveI	ACCTGC	1 cut(s)	641
Cac8I	GCNNGC	2 cut(s)	492, 784
CaiI	CAGNNNCTG	1 cut(s)	530
CciI	TCATGA	2 cut(s)	1132, 1323
Cfr10I	RCCGGY	1 cut(s)	281
ClaI	ATCGAT	1 cut(s)	700
Csp6I	GTAC	2 cut(s)	977, 1037
CspAI	ACCGGT	1 cut(s)	281
CviQI	GTAC	2 cut(s)	977, 1037
DdeI	CTNAG	7 cut(s)	347, 531, 873, 938, 1195, 1221, 1397
DpnI	GATC	9 cut(s)	183, 638, 703, 774, 993, 1095, 1131, 1235, 1271
DpnII	GATC	9 cut(s)	181, 636, 701, 772, 991, 1093, 1129, 1233, 1269
DraIII	CACNNNGTG	1 cut(s)	985
Eco130I	CCWWGG	2 cut(s)	390, 1125
Eco31I	GGTCTC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	1086, 1379
Eco81I	CCTNAGG	1 cut(s)	531
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	205, 485
EcoT14I	CCWWGG	2 cut(s)	390, 1125
ErhI	CCWWGG	2 cut(s)	390, 1125
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FbaI	TGATCA	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	8 cut(s)	295, 298, 321, 378, 525, 861, 1332, 1365
FokI	GGATG	5 cut(s)	390, 561, 869, 939, 1047
Fsp4HI	GCNGC	8 cut(s)	295, 298, 321, 378, 525, 861, 1332, 1365
FspBI	CTAG	5 cut(s)	141, 236, 362, 722, 779
GluI	GCNGC	8 cut(s)	295, 298, 321, 378, 525, 861, 1332, 1365
GsuI	CTGGAG	2 cut(s)	139, 228
HaeIII	GGCC	1 cut(s)	786
HapII	CCGG	3 cut(s)	232, 282, 816
Hin1I	GRCGYC	1 cut(s)	1320
HinfI	GANTC	3 cut(s)	28, 571, 1354
HpaII	CCGG	3 cut(s)	232, 282, 816
HphI	GGTGA	6 cut(s)	96, 167, 179, 235, 271, 665
Hpy166II	GTNNAC	3 cut(s)	51, 548, 979
Hpy188III	TCNNGA	8 cut(s)	25, 156, 530, 796, 971, 1064, 1133, 1324
Hpy8I	GTNNAC	3 cut(s)	51, 548, 979
Hpy99I	CGWCG	2 cut(s)	37, 1213
HpyAV	CCTTC	7 cut(s)	153, 209, 617, 908, 916, 1141, 1354
HpyCH4III	ACNGT	5 cut(s)	519, 595, 1110, 1139, 1192
HpyCH4IV	ACGT	1 cut(s)	1320
HpyCH4V	TGCA	4 cut(s)	380, 515, 728, 1343
HpyF10VI	GCNNNNNNNGC	7 cut(s)	311, 320, 491, 521, 869, 883, 1340
HpyF3I	CTNAG	7 cut(s)	347, 531, 873, 938, 1195, 1221, 1397
HpySE526I	ACGT	1 cut(s)	1320
Hsp92I	GRCGYC	1 cut(s)	1320
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	9 cut(s)	181, 636, 701, 772, 991, 1093, 1129, 1233, 1269
LmnI	GCTCC	3 cut(s)	437, 532, 1281
Lsp1109I	GCAGC	7 cut(s)	307, 309, 364, 536, 847, 1318, 1376
LweI	GCATC	5 cut(s)	307, 456, 697, 703, 847
MaeI	CTAG	5 cut(s)	141, 236, 362, 722, 779
MaeII	ACGT	1 cut(s)	1320
MaeIII	GTNAC	4 cut(s)	173, 595, 1154, 1257
MalI	GATC	9 cut(s)	183, 638, 703, 774, 993, 1095, 1131, 1235, 1271
MboI	GATC	9 cut(s)	181, 636, 701, 772, 991, 1093, 1129, 1233, 1269
MboII	GAAGA	6 cut(s)	111, 114, 117, 224, 235, 708
MflI	RGATCY	4 cut(s)	772, 991, 1093, 1269
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	7 cut(s)	422, 537, 763, 878, 1051, 1226, 1242
MmeI	TCCRAC	3 cut(s)	56, 715, 721
MnlI	CCTC	5 cut(s)	30, 526, 737, 786, 1015
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	4 cut(s)	762, 1050, 1173, 1404
MslI	CAYNNNNRTG	2 cut(s)	408, 566
MspI	CCGG	3 cut(s)	232, 282, 816
MspR9I	CCNGG	2 cut(s)	207, 487
Mva1269I	GAATGC	1 cut(s)	1389
MvaI	CCWGG	2 cut(s)	207, 487
MwoI	GCNNNNNNNGC	7 cut(s)	311, 320, 491, 521, 869, 883, 1340
NdeII	GATC	9 cut(s)	181, 636, 701, 772, 991, 1093, 1129, 1233, 1269
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	3 cut(s)	494, 1181, 1343
PaeI	GCATGC	1 cut(s)	494
PagI	TCATGA	2 cut(s)	1132, 1323
PaqCI	CACCTGC	1 cut(s)	641
PciI	ACATGT	1 cut(s)	1177
PctI	GAATGC	1 cut(s)	1389
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	3 cut(s)	28, 571, 1354
PflMI	CCANNNNNTGG	1 cut(s)	162
PinAI	ACCGGT	1 cut(s)	281
PkrI	GCNGC	8 cut(s)	296, 299, 322, 379, 526, 862, 1333, 1366
PscI	ACATGT	1 cut(s)	1177
PshBI	ATTAAT	1 cut(s)	1050
Psp6I	CCWGG	2 cut(s)	205, 485
PspEI	GGTNACC	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	205, 485
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	4 cut(s)	772, 991, 1093, 1269
RsaI	GTAC	2 cut(s)	978, 1038
RsaNI	GTAC	2 cut(s)	977, 1037
RseI	CAYNNNNRTG	2 cut(s)	408, 566
SaqAI	TTAA	4 cut(s)	762, 1050, 1173, 1404
SatI	GCNGC	8 cut(s)	295, 298, 321, 378, 525, 861, 1332, 1365
Sau3AI	GATC	9 cut(s)	181, 636, 701, 772, 991, 1093, 1129, 1233, 1269
ScrFI	CCNGG	2 cut(s)	207, 487
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	5 cut(s)	307, 456, 697, 703, 847
SmiMI	CAYNNNNRTG	2 cut(s)	408, 566
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	7 cut(s)	422, 537, 763, 878, 1051, 1226, 1242
SsiI	CCGC	4 cut(s)	246, 294, 303, 522
SspMI	CTAG	5 cut(s)	141, 236, 362, 722, 779
StyD4I	CCNGG	2 cut(s)	205, 485
StyI	CCWWGG	2 cut(s)	390, 1125
TaaI	ACNGT	5 cut(s)	519, 595, 1110, 1139, 1192
TaiI	ACGT	1 cut(s)	1323
TaqI	TCGA	3 cut(s)	147, 700, 797
TasI	AATT	7 cut(s)	422, 537, 763, 878, 1051, 1226, 1242
TatI	WGTACW	1 cut(s)	976
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	28, 571, 1354
Tru1I	TTAA	4 cut(s)	762, 1050, 1173, 1404
Tru9I	TTAA	4 cut(s)	762, 1050, 1173, 1404
TscAI	CASTG	3 cut(s)	522, 1009, 1195
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	7 cut(s)	297, 320, 377, 524, 860, 1331, 1364
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	5 cut(s)	117, 530, 584, 948, 1076
TspGWI	ACGGA	2 cut(s)	319, 1054
TspRI	CASTG	3 cut(s)	522, 1009, 1195
Van91I	CCANNNNNTGG	1 cut(s)	162
VspI	ATTAAT	1 cut(s)	1050
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	3 cut(s)	494, 1181, 1343
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	5 cut(s)	141, 236, 362, 722, 779
ZraI	GACGTC	1 cut(s)	1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.