Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003006

Physical Location & Seq

Genomic Coordinates Reverse (-)

22609677 .. 22613310

Gene Structure 3634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGGATTCAGATTCCACAATCTCAATTCTGTACGCAAAAGGCTCGCTTTCCACGTTCACAAGCACAATCATCGTCCTCCTCTTCCCAATCCCACAATATCCCAAATCCTCGATTCCCATCCGCAAAACCCTATTTACTCGATCGCCAGACGGTGGCATTTGGGCCACTCCCACCACCAAAACGATGATCAGCATCGCCTCTCCGGTGAAGAGGGGGAGAAGATTTTCCGGATGGGATTGGCAGCTGATGTTGGACTGGCTGCCGGGAAAGCTTTGACGGGTTACTTGTCCGGAAGCACGGCGATCATTGCTGATGCCGCCCATTCGGTCTCCGACGTGGTTCTTAGCAGCGTTGCTTTATGGTCATTTAAAGCTGCAAAGGCTCCGAAAGACAAAGAACACCCATATGGACACGGTAAATTTGAGACTCTTGGAGCACTTGGAATCTCTTGTATGCTGTTGGCCACGGCTGGTGGCATTGCATGGCATGCTTTGGATCTTTTGATGGGATTGTTTTCAGCAGATCCTGCTATAGTTAGTCAGTCATTGACACATGAGCATGGGCATAATCATCATCATGGAGTTGACATGGAGCATCCTGTTCTAGCATTGAGCATGACTGTTTTTTCAATATCTGTTAAAGAAGGGTACCAAAATGCTATTTCATCAGTAGTTGCTCTCATTGGAGTTGGCATGATCCTGAAGGCGGGAATTGAAACTGGGCATCAGAGTGTCTTGGAACTGGTGGATGCTGCAATCCCAGCAGAACTTTTGGATCCTATGAAACAAACAATTGTACAAGTTGAGGGTGTGAAGGGTTGTCATCGGTTGAGGGGAAGGAGGGCAGGTTCATCTCTATACCTTGATGTACATATTGAGGTTGATCCTTTTTGTAGTGTTAGCGCTGCACATGACATTGGAGAAAATGTTCGTCGTCAGATTCACAAATCCCATCCTGAAGTCTCTGAGGTTTTCATACACATAGATCCTTCAATTTCACAAATTTTCCCCAGTGAAGATCAGCCAGAAATTCTCAAAGAAACTGCATGCCCGAATGTTTCTCCTGCAGAAAAAGACATTGAGGCAGCCGTTTCTACCATCATCTCATCGAAGTATGCAGAGAAAATGGTTGTCGAACGGATAACGCATCACTTGTTACAAGGCAAGATGTATCTCCAAATTGAGGTTTCCATGCCTCCGGACATCTTAATTCGAGATGCAATGGAGGTGGCAAAAGAAGCCGAGCAAGACATTTTGAGGGCGGCGACGAATCTCATTCACGTCGGCATTCAGCTGCGTCTGAGGAATCCAATTCCACAGTTCAACGGTGACCAAGAAGCCAGAAAGAAGGCAAGCAAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

455

Amino Acids

49.71

Weight (kDa)

6.53

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	79 - 214	3.5e-24	Cation efflux transmembrane domain
ZT_dimer	PF16916	254 - 330	3.6e-22	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47830 AT2G47830
fragaria_vesca	FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110
malus_domestica	MD03G1284200.v1.1
prunus_persica	Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1
pyrus_communis	pycom03g22500
rosa_chinensis	RchiOBHm_Chr6g0293181
rosa_laevigata	RLG00000011969
rosa_multiflora	Rmu_co8409675.1_g000001 Rmu_sc0014786.1_g000003 Rmu_sc0039259.1_g000001 Rmu_sc0042811.1_g000001 Rmu_sc0042818.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174370
rosa_rugosa	Rorug06G0233200 Rorug06G0233300
rosa_samantha	Rh6AG345800 Rh6BG353600 Rh6CG360000 Rh6DG346400
rosa_wichuraiana	Rw6G030140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	836
Acc65I	GGTACC	1 cut(s)	648
AccB1I	GGYRCC	1 cut(s)	648
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccIII	TCCGGA	3 cut(s)	228, 290, 1198
AciI	CCGC	4 cut(s)	122, 318, 707, 1262
AclWI	GGATC	7 cut(s)	504, 518, 691, 770, 783, 878, 980
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	3 cut(s)	419, 1002, 1029
AcuI	CTGAAG	2 cut(s)	722, 978
AfaI	GTAC	4 cut(s)	33, 650, 798, 870
AfeI	AGCGCT	1 cut(s)	904
AfiI	CCNNNNNNNGG	3 cut(s)	153, 706, 1183
AgsI	TTSAA	4 cut(s)	630, 716, 993, 1324
AjiI	CACGTC	2 cut(s)	337, 1282
AloI	GAACNNNNNNTCC	4 cut(s)	832, 864, 912, 944
AluBI	AGCT	4 cut(s)	245, 272, 374, 1294
AluI	AGCT	4 cut(s)	245, 272, 374, 1294
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	3 cut(s)	334, 419, 967
AlwI	GGATC	7 cut(s)	504, 518, 691, 770, 783, 878, 980
AlwNI	CAGNNNCTG	1 cut(s)	527
Aor13HI	TCCGGA	3 cut(s)	228, 290, 1198
Aor51HI	AGCGCT	1 cut(s)	904
AoxI	GGCC	2 cut(s)	163, 462
ApeKI	GCWGC	8 cut(s)	242, 260, 348, 374, 752, 905, 1085, 1294
ApoI	RAATTY	3 cut(s)	419, 1002, 1029
Asp700I	GAANNNNTTC	2 cut(s)	224, 927
Asp718I	GGTACC	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	905
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	218, 1340
BalI	TGGCCA	1 cut(s)	464
BamHI	GGATCC	1 cut(s)	775
BanI	GGYRCC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	8 cut(s)	247, 254, 360, 361, 739, 892, 1097, 1281
BccI	CCATC	5 cut(s)	126, 226, 499, 960, 1106
BceAI	ACGGC	3 cut(s)	315, 483, 1073
BcgI	CGANNNNNNTGC	4 cut(s)	25, 53, 59, 87
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	334, 419, 967
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	2 cut(s)	531, 1065
BfoI	RGCGCY	1 cut(s)	906
BfuAI	ACCTGC	1 cut(s)	836
Bme1390I	CCNGG	1 cut(s)	265
BmgBI	CACGTC	2 cut(s)	337, 1282
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	3 cut(s)	384, 650, 777
BmrFI	CCNGG	1 cut(s)	265
BmrI	ACTGGG	2 cut(s)	729, 1005
BmsI	GCATC	7 cut(s)	202, 304, 604, 733, 739, 1156, 1207
BmuI	ACTGGG	2 cut(s)	729, 1005
BpuMI	CCSGG	1 cut(s)	265
BsaBI	GATNNNNATC	2 cut(s)	117, 192
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	465
BsaWI	WCCGGW	4 cut(s)	203, 228, 290, 1198
BsaXI	ACNNNNNCTCC	4 cut(s)	832, 862, 912, 942
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 706, 1183
Bse1I	ACTGG	4 cut(s)	261, 724, 747, 1011
Bse3DI	GCAATG	3 cut(s)	306, 477, 1227
Bse8I	GATNNNNATC	2 cut(s)	117, 192
BseAI	TCCGGA	3 cut(s)	228, 290, 1198
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	5 cut(s)	118, 237, 595, 754, 952
BseJI	GATNNNNATC	2 cut(s)	117, 192
BseLI	CCNNNNNNNGG	3 cut(s)	153, 706, 1183
BseMI	GCAATG	3 cut(s)	306, 477, 1227
BseMII	CTCAG	2 cut(s)	957, 1292
BseNI	ACTGG	4 cut(s)	261, 724, 747, 1011
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	8 cut(s)	247, 254, 360, 361, 739, 892, 1097, 1281
BseYI	CCCAGC	1 cut(s)	760
BsgI	GTGCAG	1 cut(s)	891
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	165, 464
BshNI	GGYRCC	1 cut(s)	648
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	439
BsiSI	CCGG	5 cut(s)	204, 229, 264, 291, 1199
BslI	CCNNNNNNNGG	3 cut(s)	153, 706, 1183
BsmAI	GTCTC	3 cut(s)	334, 419, 967
BsmI	GAATGC	1 cut(s)	1287
BsnI	GGCC	2 cut(s)	165, 464
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp13I	TCCGGA	3 cut(s)	228, 290, 1198
Bsp1407I	TGTACA	2 cut(s)	796, 868
BspACI	CCGC	4 cut(s)	122, 318, 707, 1262
BspANI	GGCC	2 cut(s)	165, 464
BspCNI	CTCAG	2 cut(s)	958, 1293
BspEI	TCCGGA	3 cut(s)	228, 290, 1198
BspLI	GGNNCC	3 cut(s)	384, 650, 777
BspMAI	CTGCAG	1 cut(s)	1069
BspMI	ACCTGC	1 cut(s)	836
BspPI	GGATC	7 cut(s)	504, 518, 691, 770, 783, 878, 980
BspT107I	GGYRCC	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	3 cut(s)	306, 477, 1227
BsrGI	TGTACA	2 cut(s)	796, 868
BsrI	ACTGG	4 cut(s)	261, 724, 747, 1011
BssECI	CCNNGG	1 cut(s)	465
Bst4CI	ACNGT	5 cut(s)	153, 416, 622, 1320, 1328
Bst6I	CTCTTC	2 cut(s)	87, 204
BstAPI	GCANNNNNTGC	2 cut(s)	488, 527
BstAUI	TGTACA	2 cut(s)	796, 868
BstC8I	GCNNGC	4 cut(s)	45, 489, 1048, 1354
BstDEI	CTNAG	3 cut(s)	344, 966, 1301
BstDSI	CCRYGG	1 cut(s)	465
BstEII	GGTNACC	1 cut(s)	1328
BstF5I	GGATG	5 cut(s)	118, 237, 595, 754, 952
BstH2I	RGCGCY	1 cut(s)	906
BstHHI	GCGC	1 cut(s)	905
BstMAI	GTCTC	3 cut(s)	334, 419, 967
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	8 cut(s)	269, 308, 317, 380, 488, 527, 761, 1238
BstNSI	RCATGY	2 cut(s)	491, 1050
BstPI	GGTNACC	1 cut(s)	1328
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	2 cut(s)	531, 1065
BstV1I	GCAGC	8 cut(s)	247, 254, 360, 361, 739, 892, 1097, 1281
BstX2I	RGATCY	4 cut(s)	496, 523, 775, 985
BstYI	RGATCY	4 cut(s)	496, 523, 775, 985
BsuRI	GGCC	2 cut(s)	165, 464
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	179
BtrI	CACGTC	2 cut(s)	337, 1282
BtsCI	GGATG	5 cut(s)	118, 237, 595, 754, 952
BtsIMutI	CAGTG	1 cut(s)	1018
BveI	ACCTGC	1 cut(s)	836
Cac8I	GCNNGC	4 cut(s)	45, 489, 1048, 1354
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	1 cut(s)	905
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	1286
Csp6I	GTAC	4 cut(s)	32, 649, 797, 869
CspCI	CAANNNNNGTGG	2 cut(s)	1209, 1244
CviQI	GTAC	4 cut(s)	32, 649, 797, 869
DdeI	CTNAG	3 cut(s)	344, 966, 1301
DraI	TTTAAA	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	87, 204
EarI	CTCTTC	2 cut(s)	87, 204
Eco31I	GGTCTC	1 cut(s)	334
Eco47III	AGCGCT	1 cut(s)	904
Eco57I	CTGAAG	2 cut(s)	722, 978
Eco91I	GGTNACC	1 cut(s)	1328
EcoO65I	GGTNACC	1 cut(s)	1328
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FauI	CCCGC	1 cut(s)	700
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	187
FokI	GGATG	5 cut(s)	105, 244, 582, 761, 939
FspBI	CTAG	1 cut(s)	605
GlaI	GCGC	1 cut(s)	904
GsaI	CCCAGC	1 cut(s)	764
HaeII	RGCGCY	1 cut(s)	906
HaeIII	GGCC	2 cut(s)	165, 464
HapII	CCGG	5 cut(s)	204, 229, 264, 291, 1199
HgaI	GACGC	1 cut(s)	1286
HhaI	GCGC	1 cut(s)	905
Hin6I	GCGC	1 cut(s)	903
HinP1I	GCGC	1 cut(s)	903
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	8 cut(s)	6, 12, 113, 427, 444, 940, 1270, 1306
HpaII	CCGG	5 cut(s)	204, 229, 264, 291, 1199
HphI	GGTGA	2 cut(s)	218, 1340
Hpy166II	GTNNAC	2 cut(s)	58, 586
Hpy188I	TCNGA	7 cut(s)	11, 334, 387, 729, 939, 967, 1302
Hpy188III	TCNNGA	6 cut(s)	229, 291, 700, 956, 1199, 1214
Hpy8I	GTNNAC	2 cut(s)	58, 586
Hpy99I	CGWCG	4 cut(s)	338, 936, 1270, 1286
HpyAV	CCTTC	6 cut(s)	638, 697, 808, 831, 999, 1342
HpyCH4III	ACNGT	5 cut(s)	153, 416, 622, 1320, 1328
HpyCH4IV	ACGT	3 cut(s)	54, 336, 1281
HpyCH4V	TGCA	8 cut(s)	377, 482, 755, 908, 1046, 1067, 1118, 1220
HpyF10VI	GCNNNNNNNGC	8 cut(s)	269, 308, 317, 380, 488, 527, 761, 1238
HpyF3I	CTNAG	3 cut(s)	344, 966, 1301
HpySE526I	ACGT	3 cut(s)	54, 336, 1281
HspAI	GCGC	1 cut(s)	903
Kpn2I	TCCGGA	3 cut(s)	228, 290, 1198
KpnI	GGTACC	1 cut(s)	652
Ksp22I	TGATCA	1 cut(s)	187
LmnI	GCTCC	3 cut(s)	388, 434, 592
Lsp1109I	GCAGC	8 cut(s)	247, 254, 360, 361, 739, 892, 1097, 1281
LweI	GCATC	7 cut(s)	202, 304, 604, 733, 739, 1156, 1207
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	3 cut(s)	54, 336, 1281
MaeIII	GTNAC	3 cut(s)	281, 1155, 1328
MboII	GAAGA	4 cut(s)	74, 221, 232, 1028
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	4 cut(s)	496, 523, 775, 985
MhlI	GDGCHC	1 cut(s)	439
MlsI	TGGCCA	1 cut(s)	464
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	2 cut(s)	232, 357
Mox20I	TGGCCA	1 cut(s)	464
MroI	TCCGGA	3 cut(s)	228, 290, 1198
MroXI	GAANNNNTTC	2 cut(s)	224, 927
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	3 cut(s)	369, 639, 1208
MslI	CAYNNNNRTG	4 cut(s)	405, 558, 576, 729
Msp20I	TGGCCA	1 cut(s)	464
MspA1I	CMGCKG	2 cut(s)	245, 1294
MspI	CCGG	5 cut(s)	204, 229, 264, 291, 1199
MspR9I	CCNGG	1 cut(s)	265
MunI	CAATTG	1 cut(s)	792
Mva1269I	GAATGC	1 cut(s)	1287
MwoI	GCNNNNNNNGC	8 cut(s)	269, 308, 317, 380, 488, 527, 761, 1238
NciI	CCSGG	1 cut(s)	265
NdeI	CATATG	1 cut(s)	406
NlaIV	GGNNCC	3 cut(s)	384, 650, 777
NmeAIII	GCCGAG	1 cut(s)	1267
NmuCI	GTSAC	1 cut(s)	1328
NspI	RCATGY	2 cut(s)	491, 1050
PaeI	GCATGC	2 cut(s)	491, 1050
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	1287
PdmI	GAANNNNTTC	2 cut(s)	224, 927
PfeI	GAWTC	7 cut(s)	6, 12, 113, 444, 940, 1270, 1306
PflMI	CCANNNNNTGG	1 cut(s)	153
Ple19I	CGATCG	1 cut(s)	144
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PspEI	GGTNACC	1 cut(s)	1328
PspFI	CCCAGC	1 cut(s)	760
PspN4I	GGNNCC	3 cut(s)	384, 650, 777
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	1069
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	4 cut(s)	496, 523, 775, 985
PvuI	CGATCG	1 cut(s)	144
PvuII	CAGCTG	2 cut(s)	245, 1294
RsaI	GTAC	4 cut(s)	33, 650, 798, 870
RsaNI	GTAC	4 cut(s)	32, 649, 797, 869
RseI	CAYNNNNRTG	4 cut(s)	405, 558, 576, 729
SaqAI	TTAA	3 cut(s)	369, 639, 1208
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	439
SfaNI	GCATC	7 cut(s)	202, 304, 604, 733, 739, 1156, 1207
SfcI	CTRYAG	2 cut(s)	531, 1065
SmiMI	CAYNNNNRTG	4 cut(s)	405, 558, 576, 729
SphI	GCATGC	2 cut(s)	491, 1050
SsiI	CCGC	4 cut(s)	122, 318, 707, 1262
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	5 cut(s)	153, 416, 622, 1320, 1328
TaiI	ACGT	3 cut(s)	57, 339, 1284
TaqI	TCGA	5 cut(s)	111, 140, 1109, 1134, 1213
TaqII	GACCGA	1 cut(s)	316
TatI	WGTACW	2 cut(s)	796, 868
TauI	GCSGC	2 cut(s)	320, 1265
TfiI	GAWTC	7 cut(s)	6, 12, 113, 444, 940, 1270, 1306
Tru1I	TTAA	3 cut(s)	369, 639, 1208
Tru9I	TTAA	3 cut(s)	369, 639, 1208
TscAI	CASTG	1 cut(s)	1018
TseFI	GTSAC	1 cut(s)	1328
TseI	GCWGC	8 cut(s)	242, 260, 348, 374, 752, 905, 1085, 1294
Tsp45I	GTSAC	1 cut(s)	1328
TspDTI	ATGAA	4 cut(s)	654, 797, 840, 964
TspGWI	ACGGA	1 cut(s)	1153
TspRI	CASTG	1 cut(s)	1018
Van91I	CCANNNNNTGG	1 cut(s)	153
XapI	RAATTY	3 cut(s)	419, 1002, 1029
XceI	RCATGY	2 cut(s)	491, 1050
XmnI	GAANNNNTTC	2 cut(s)	224, 927
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.