Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003006

Physical Location & Seq

Genomic Coordinates Forward (+)

54905760 .. 54910032

Gene Structure 4273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG360000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGTCACTCTTGATTTGTACCTACACGCTACTCAATTGATCTTATATTATGCATTATACGGTTTTTTATTGTCATTTTCGTTTGTGTTTGTTACAATTGTCTTCTTGTTTCACTTTGCTTTTCCAGGACATGGTAAATTTGAGACGCTAGGAGCACTTGGAATCTCTTTTATGCTGTTGGGAACTGCTGGTGGCATTGCTTGGCATGCTTTGGATATTTTGATGGGATTGTATTCAGCAAATCCAGAAGTAGTTAGTCAGTCATTGACACATCATAACCAGCACCATAGCGGACATCACCATGGAGTTGACATGGAGCACCCAACCCTAGCTTTGGGCATGACGATTCTCTCGATTGGTGTCAAAGAAGGGCTATACTGGATCACAAAACGGGCAGGAGAGAAACAAGGTAGTGGACTGATGAAAGCAAATGCATGGCATCATCGTGCAGATGCCATTTCGTCAGTAGTTGCTCTCGTCGGAGTTGGAGGTTCAATCCTAGGAGTGAAGTTTCTAGATCCCCTTGCTGGACTTCTTGTCTCGGGCATGATCCTAAAGGCTGGTATCGAAACAGGGTACCAGAGTGTCTTGGAGTTGGTGGATGCTGCAATTCCCACAAAAGAGTTGGATCCTATTAAACAAACAATTCTACAAGTCGAGGGTATGAAGGGTTGCCATCGCTTGAGAGGAAGGAGAGCTGGTTCATCTCTTTATCTTGATGTACACATTGAGGTTGATCCTTTTTGTAGTGTTAGCGCAGCACATGACATTGGAGAAAAGGTTCGTCATCATATTCACAAAACTCATCCCGAAGTGTCTGAGGTTTTTATACACATAGATCCTGCACTTCCAGTAATTTCCCCTGGTGTAGATGAGCCAAAGGAATCTCCGGGAAGTGCACACCAGAGTTCTCCTGCTGCAGAGGATAAAGACATTGATGCGGCTGTTTCCAGTATCATCTCATCTAGATATGCCCAGAAAATGGTTGTAGAGCGCGTAACGCACCACTTGTTGCAAGGGAAGATGTTTCTCCAAATCCAGGTTTCGATGCCCCCAGACATCTTGATTCGAGATGCAATAGAGGTGGCAAAAGAAGCTGAAGAAGAGATTTCGAAGGCAGCAACTAATATTATTCATGTGAGCGTTCAGCTACGTCTGGGAAGTCCAATTCCACAACTCAACCATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

396

Amino Acids

43.04

Weight (kDa)

6.17

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	43 - 200	1.4e-21	Cation efflux transmembrane domain
ZT_dimer	PF16916	205 - 281	1.5e-22	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47830 AT2G47830
fragaria_vesca	FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110
malus_domestica	MD03G1284200.v1.1
prunus_persica	Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1
pyrus_communis	pycom03g22500
rosa_chinensis	RchiOBHm_Chr6g0293181
rosa_laevigata	RLG00000011969
rosa_multiflora	Rmu_co8409675.1_g000001 Rmu_sc0014786.1_g000003 Rmu_sc0039259.1_g000001 Rmu_sc0042811.1_g000001 Rmu_sc0042818.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174370
rosa_rugosa	Rorug06G0233200 Rorug06G0233300
rosa_samantha	Rh6AG345800 Rh6BG353600 Rh6CG360000 Rh6DG346400
rosa_wichuraiana	Rw6G030140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	576
AccB1I	GGYRCC	1 cut(s)	576
AccB7I	CCANNNNNTGG	2 cut(s)	131, 982
AccII	CGCG	1 cut(s)	996
AciI	CCGC	2 cut(s)	291, 941
AclWI	GGATC	7 cut(s)	389, 512, 544, 623, 636, 731, 833
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	1119
AfaI	GTAC	3 cut(s)	20, 578, 723
AfiI	CCNNNNNNNGG	5 cut(s)	131, 334, 527, 982, 1039
AgsI	TTSAA	1 cut(s)	495
AhdI	GACNNNNNGTC	1 cut(s)	536
AjnI	CCWGG	3 cut(s)	124, 862, 1038
AloI	GAACNNNNNNTCC	4 cut(s)	685, 717, 765, 797
AluBI	AGCT	4 cut(s)	332, 698, 1097, 1150
AluI	AGCT	4 cut(s)	332, 698, 1097, 1150
Alw21I	GWGCWC	3 cut(s)	157, 321, 901
Alw26I	GTCTC	2 cut(s)	137, 544
Alw44I	GTGCAC	1 cut(s)	897
AlwI	GGATC	7 cut(s)	389, 512, 544, 623, 636, 731, 833
Ama87I	CYCGRG	1 cut(s)	541
ApaLI	GTGCAC	1 cut(s)	897
ApeKI	GCWGC	4 cut(s)	605, 758, 917, 1118
ApoI	RAATTY	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	780
Asp718I	GGTACC	1 cut(s)	576
AspA2I	CCTAGG	1 cut(s)	499
AspLEI	GCGC	2 cut(s)	758, 996
AsuC2I	CCSGG	1 cut(s)	891
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	1112
AvaI	CYCGRG	1 cut(s)	541
AvrII	CCTAGG	1 cut(s)	499
BaeGI	GKGCMC	1 cut(s)	901
BaeI	ACNNNNGTAYC	2 cut(s)	568, 601
BamHI	GGATCC	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	3 cut(s)	157, 321, 901
BbvI	GCAGC	4 cut(s)	592, 770, 904, 1130
BccI	CCATC	2 cut(s)	217, 684
BciT130I	CCWGG	3 cut(s)	126, 864, 1040
BcnI	CCSGG	1 cut(s)	891
BcoDI	GTCTC	2 cut(s)	137, 544
BfaI	CTAG	5 cut(s)	149, 329, 500, 515, 966
BfmI	CTRYAG	1 cut(s)	918
BisI	GCNGC	5 cut(s)	606, 759, 918, 942, 1119
BlnI	CCTAGG	1 cut(s)	499
BlsI	GCNGC	5 cut(s)	607, 760, 919, 943, 1120
Bme1390I	CCNGG	4 cut(s)	126, 864, 891, 1040
BmeRI	GACNNNNNGTC	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	541
BmiI	GGNNCC	2 cut(s)	578, 630
BmrFI	CCNGG	4 cut(s)	126, 864, 891, 1040
BmsI	GCATC	6 cut(s)	442, 448, 592, 928, 1038, 1063
BpiI	GAAGAC	1 cut(s)	94
Bpu14I	TTCGAA	1 cut(s)	1112
BpuEI	CTTGAG	1 cut(s)	703
BpuMI	CCSGG	1 cut(s)	891
BsaJI	CCNNGG	3 cut(s)	301, 499, 862
BsaXI	ACNNNNNCTCC	4 cut(s)	685, 715, 765, 795
Bsc4I	CCNNNNNNNGG	5 cut(s)	131, 334, 527, 982, 1039
Bse1I	ACTGG	3 cut(s)	383, 851, 951
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	3 cut(s)	126, 864, 1040
BseDI	CCNNGG	3 cut(s)	301, 499, 862
BseGI	GGATG	2 cut(s)	607, 805
BseLI	CCNNNNNNNGG	5 cut(s)	131, 334, 527, 982, 1039
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	3 cut(s)	383, 851, 951
BseSI	GKGCMC	1 cut(s)	901
BseXI	GCAGC	4 cut(s)	592, 770, 904, 1130
BsgI	GTGCAG	2 cut(s)	468, 828
Bsh1236I	CGCG	1 cut(s)	996
BshNI	GGYRCC	1 cut(s)	576
BsiHKAI	GWGCWC	3 cut(s)	157, 321, 901
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	890
BslI	CCNNNNNNNGG	5 cut(s)	131, 334, 527, 982, 1039
BsmAI	GTCTC	2 cut(s)	137, 544
BsmBI	CGTCTC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	541
Bsp119I	TTCGAA	1 cut(s)	1112
Bsp1286I	GDGCHC	3 cut(s)	157, 321, 901
Bsp1407I	TGTACA	1 cut(s)	721
Bsp143I	GATC	7 cut(s)	39, 381, 517, 549, 628, 736, 838
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	2 cut(s)	291, 941
BspCNI	CTCAG	1 cut(s)	811
BspFNI	CGCG	1 cut(s)	996
BspLI	GGNNCC	2 cut(s)	578, 630
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	7 cut(s)	389, 512, 544, 623, 636, 731, 833
BspT104I	TTCGAA	1 cut(s)	1112
BspT107I	GGYRCC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	721
BsrI	ACTGG	3 cut(s)	383, 851, 951
BssECI	CCNNGG	3 cut(s)	301, 499, 862
BssMI	GATC	7 cut(s)	39, 381, 517, 549, 628, 736, 838
BssT1I	CCWWGG	2 cut(s)	301, 499
Bst2UI	CCWGG	3 cut(s)	126, 864, 1040
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	1098
BstAUI	TGTACA	1 cut(s)	721
BstBI	TTCGAA	1 cut(s)	1112
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	819
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	607, 805
BstFNI	CGCG	1 cut(s)	996
BstHHI	GCGC	2 cut(s)	758, 996
BstKTI	GATC	7 cut(s)	42, 384, 520, 552, 631, 739, 841
BstMAI	GTCTC	2 cut(s)	137, 544
BstMBI	GATC	7 cut(s)	39, 381, 517, 549, 628, 736, 838
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 1000, 1094
BstNI	CCWGG	3 cut(s)	126, 864, 1040
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	4 cut(s)	124, 862, 889, 1038
BstSFI	CTRYAG	1 cut(s)	918
BstSLI	GKGCMC	1 cut(s)	901
BstUI	CGCG	1 cut(s)	996
BstV1I	GCAGC	4 cut(s)	592, 770, 904, 1130
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	3 cut(s)	517, 628, 838
BstYI	RGATCY	3 cut(s)	517, 628, 838
BtgI	CCRYGG	1 cut(s)	301
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	607, 805
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	2 cut(s)	758, 996
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	3 cut(s)	19, 577, 722
CspCI	CAANNNNNGTGG	2 cut(s)	1065, 1100
CviJI	RGCY	8 cut(s)	332, 373, 560, 698, 877, 944, 1097, 1150
CviKI_1	RGCY	8 cut(s)	332, 373, 560, 698, 877, 944, 1097, 1150
CviQI	GTAC	3 cut(s)	19, 577, 722
DdeI	CTNAG	1 cut(s)	819
DpnI	GATC	7 cut(s)	41, 383, 519, 551, 630, 738, 840
DpnII	GATC	7 cut(s)	39, 381, 517, 549, 628, 736, 838
DriI	GACNNNNNGTC	1 cut(s)	536
Eam1104I	CTCTTC	1 cut(s)	1098
Eam1105I	GACNNNNNGTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	1098
Eco130I	CCWWGG	2 cut(s)	301, 499
Eco57I	CTGAAG	1 cut(s)	1119
Eco88I	CYCGRG	1 cut(s)	541
EcoRII	CCWGG	3 cut(s)	124, 862, 1038
EcoT14I	CCWWGG	2 cut(s)	301, 499
EcoT22I	ATGCAT	2 cut(s)	55, 436
ErhI	CCWWGG	2 cut(s)	301, 499
Esp3I	CGTCTC	1 cut(s)	137
Fnu4HI	GCNGC	5 cut(s)	606, 759, 918, 942, 1119
FokI	GGATG	2 cut(s)	614, 792
Fsp4HI	GCNGC	5 cut(s)	606, 759, 918, 942, 1119
FspBI	CTAG	5 cut(s)	149, 329, 500, 515, 966
GlaI	GCGC	2 cut(s)	757, 995
GluI	GCNGC	5 cut(s)	606, 759, 918, 942, 1119
HapII	CCGG	1 cut(s)	890
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	2 cut(s)	758, 996
Hin6I	GCGC	2 cut(s)	756, 994
HinP1I	GCGC	2 cut(s)	756, 994
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	4 cut(s)	162, 346, 884, 1066
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	4 cut(s)	310, 416, 724, 899
Hpy188I	TCNGA	2 cut(s)	482, 820
Hpy188III	TCNNGA	9 cut(s)	11, 245, 352, 515, 716, 809, 966, 1063, 1070
Hpy8I	GTNNAC	4 cut(s)	310, 416, 724, 899
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	4 cut(s)	362, 661, 684, 1108
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	1153
HpyCH4V	TGCA	9 cut(s)	53, 434, 449, 608, 845, 899, 920, 1015, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 1000, 1094
HpyF3I	CTNAG	1 cut(s)	819
HpySE526I	ACGT	1 cut(s)	1153
HspAI	GCGC	2 cut(s)	756, 994
KpnI	GGTACC	1 cut(s)	580
Kzo9I	GATC	7 cut(s)	39, 381, 517, 549, 628, 736, 838
LmnI	GCTCC	2 cut(s)	152, 316
Lsp1109I	GCAGC	4 cut(s)	592, 770, 904, 1130
LweI	GCATC	6 cut(s)	442, 448, 592, 928, 1038, 1063
MaeI	CTAG	5 cut(s)	149, 329, 500, 515, 966
MaeII	ACGT	1 cut(s)	1153
MaeIII	GTNAC	3 cut(s)	4, 91, 997
MalI	GATC	7 cut(s)	41, 383, 519, 551, 630, 738, 840
MboI	GATC	7 cut(s)	39, 381, 517, 549, 628, 736, 838
MboII	GAAGA	4 cut(s)	94, 1033, 1112, 1115
MfeI	CAATTG	2 cut(s)	35, 96
MflI	RGATCY	3 cut(s)	517, 628, 838
MhlI	GDGCHC	3 cut(s)	157, 321, 901
MluCI	AATT	7 cut(s)	35, 96, 137, 609, 645, 855, 1167
MmeI	TCCRAC	3 cut(s)	460, 466, 606
MnlI	CCTC	7 cut(s)	482, 652, 680, 724, 814, 916, 1075
Mph1103I	ATGCAT	2 cut(s)	55, 436
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	2 cut(s)	300, 444
MspI	CCGG	1 cut(s)	890
MspR9I	CCNGG	4 cut(s)	126, 864, 891, 1040
MunI	CAATTG	2 cut(s)	35, 96
MvaI	CCWGG	3 cut(s)	126, 864, 1040
MvnI	CGCG	1 cut(s)	996
MwoI	GCNNNNNNNGC	3 cut(s)	206, 1000, 1094
NciI	CCSGG	1 cut(s)	891
NcoI	CCATGG	1 cut(s)	301
NdeII	GATC	7 cut(s)	39, 381, 517, 549, 628, 736, 838
NlaIV	GGNNCC	2 cut(s)	578, 630
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	2 cut(s)	55, 436
NspI	RCATGY	1 cut(s)	209
NspV	TTCGAA	1 cut(s)	1112
PaeI	GCATGC	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	4 cut(s)	162, 346, 884, 1066
PflMI	CCANNNNNTGG	2 cut(s)	131, 982
PfoI	TCCNGGA	2 cut(s)	124, 889
PkrI	GCNGC	5 cut(s)	607, 760, 919, 943, 1120
Psp6I	CCWGG	3 cut(s)	124, 862, 1038
PspGI	CCWGG	3 cut(s)	124, 862, 1038
PspN4I	GGNNCC	2 cut(s)	578, 630
PstI	CTGCAG	1 cut(s)	922
PsuI	RGATCY	3 cut(s)	517, 628, 838
RsaI	GTAC	3 cut(s)	20, 578, 723
RsaNI	GTAC	3 cut(s)	19, 577, 722
RseI	CAYNNNNRTG	2 cut(s)	300, 444
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	5 cut(s)	606, 759, 918, 942, 1119
Sau3AI	GATC	7 cut(s)	39, 381, 517, 549, 628, 736, 838
ScrFI	CCNGG	4 cut(s)	126, 864, 891, 1040
SduI	GDGCHC	3 cut(s)	157, 321, 901
SfaNI	GCATC	6 cut(s)	442, 448, 592, 928, 1038, 1063
SfcI	CTRYAG	1 cut(s)	918
SfuI	TTCGAA	1 cut(s)	1112
SmiMI	CAYNNNNRTG	2 cut(s)	300, 444
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	7 cut(s)	35, 96, 137, 609, 645, 855, 1167
SsiI	CCGC	2 cut(s)	291, 941
SspI	AATATT	1 cut(s)	1129
SspMI	CTAG	5 cut(s)	149, 329, 500, 515, 966
StyD4I	CCNGG	4 cut(s)	124, 862, 889, 1038
StyI	CCWWGG	2 cut(s)	301, 499
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	1156
TaqI	TCGA	6 cut(s)	353, 567, 657, 1046, 1069, 1112
TasI	AATT	7 cut(s)	35, 96, 137, 609, 645, 855, 1167
TatI	WGTACW	1 cut(s)	721
TauI	GCSGC	1 cut(s)	944
TfiI	GAWTC	4 cut(s)	162, 346, 884, 1066
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	4 cut(s)	605, 758, 917, 1118
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	4 cut(s)	437, 680, 693, 1124
Van91I	CCANNNNNTGG	2 cut(s)	131, 982
VneI	GTGCAC	1 cut(s)	897
XapI	RAATTY	1 cut(s)	137
XbaI	TCTAGA	2 cut(s)	514, 965
XceI	RCATGY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmaJI	CCTAGG	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	5 cut(s)	149, 329, 500, 515, 966
Zsp2I	ATGCAT	2 cut(s)	55, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.