Rmu_sc0042818.1_g000001

Metal tolerance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042818.1
OG0003006
Physical Location & Seq
Reverse (-)
1 .. 751
751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042818.1_g000001.1.cds

Sequence Viewer

Length: 319 bp
atgatggataaaaatgatgtaatttcccctggtgtagatgagccaaaggaatctccgggaagtgcacaccagagttctcctgccgcagaggataaagacattgatgcggctgtttccagtatcattgcatctagatatgcccagaaaatggttgtagagcgcgtaacgcaccacttgttgcaagggaagatgtttctccaaatccaggtttcgatgcccccagacatcttgattcgagatgcaatagaggtggcaaaagaagctgaagaagagatttcgaaggcagcaactaatattattcatgtgagcgttcagctac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_efflux ZT_dimer

Protein Analysis

106

Amino Acids

11.55

Weight (kDa)

4.91

Isoelectric Point (pI)

69.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 148
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 84, 107
AcuI CTGAAG 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 148, 205
AjnI CCWGG 2 cut(s) 28, 204
AluBI AGCT 2 cut(s) 263, 316
AluI AGCT 2 cut(s) 263, 316
Alw21I GWGCWC 1 cut(s) 67
Alw44I GTGCAC 1 cut(s) 63
ApaLI GTGCAC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 57
AsuII TTCGAA 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 296
BciT130I CCWGG 2 cut(s) 30, 206
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 1 cut(s) 132
BisI GCNGC 3 cut(s) 84, 108, 285
BlsI GCNGC 3 cut(s) 85, 109, 286
Bme1390I CCNGG 3 cut(s) 30, 57, 206
BmrFI CCNGG 3 cut(s) 30, 57, 206
BmsI GCATC 4 cut(s) 94, 137, 204, 229
Bpu14I TTCGAA 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 205
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 2 cut(s) 30, 206
BseDI CCNNGG 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 148, 205
BseMI GCAATG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 148, 205
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 67
BspACI CCGC 2 cut(s) 84, 107
BspFNI CGCG 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 30, 206
Bst6I CTCTTC 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 278
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 166, 260
BstNI CCWGG 2 cut(s) 30, 206
BstSCI CCNGG 3 cut(s) 28, 55, 204
BstSLI GKGCMC 1 cut(s) 67
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 296
CfoI GCGC 1 cut(s) 162
CspCI CAANNNNNGTGG 2 cut(s) 231, 266
CviAII CATG 1 cut(s) 302
CviJI RGCY 4 cut(s) 43, 110, 263, 316
CviKI_1 RGCY 4 cut(s) 43, 110, 263, 316
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 28, 204
FaeI CATG 1 cut(s) 305
FaiI YATR 2 cut(s) 138, 303
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 84, 108, 285
Fsp4HI GCNGC 3 cut(s) 84, 108, 285
FspBI CTAG 1 cut(s) 132
GlaI GCGC 1 cut(s) 161
GluI GCNGC 3 cut(s) 84, 108, 285
HapII CCGG 1 cut(s) 56
HhaI GCGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 305
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 2 cut(s) 50, 232
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 65
Hpy188III TCNNGA 3 cut(s) 132, 229, 236
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 274
HpyCH4V TGCA 4 cut(s) 65, 128, 181, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 260
Hsp92II CATG 1 cut(s) 305
HspAI GCGC 1 cut(s) 160
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 4 cut(s) 94, 137, 204, 229
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 3 cut(s) 199, 278, 281
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 1 cut(s) 21
MnlI CCTC 2 cut(s) 82, 241
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 3 cut(s) 30, 57, 206
MvaI CCWGG 2 cut(s) 30, 206
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 166, 260
NciI CCSGG 1 cut(s) 57
NlaIII CATG 1 cut(s) 305
NspV TTCGAA 1 cut(s) 278
PfeI GAWTC 2 cut(s) 50, 232
PflMI CCANNNNNTGG 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 3 cut(s) 85, 109, 286
Psp6I CCWGG 2 cut(s) 28, 204
PspGI CCWGG 2 cut(s) 28, 204
SatI GCNGC 3 cut(s) 84, 108, 285
ScrFI CCNGG 3 cut(s) 30, 57, 206
SduI GDGCHC 1 cut(s) 67
SetI ASST 4 cut(s) 210, 252, 265, 318
SfaNI GCATC 4 cut(s) 94, 137, 204, 229
SfuI TTCGAA 1 cut(s) 278
Sse9I AATT 1 cut(s) 21
SsiI CCGC 2 cut(s) 84, 107
SspI AATATT 1 cut(s) 295
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 28, 55, 204
TaqI TCGA 3 cut(s) 212, 235, 278
TasI AATT 1 cut(s) 21
TauI GCSGC 2 cut(s) 86, 110
TfiI GAWTC 2 cut(s) 50, 232
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 148
VneI GTGCAC 1 cut(s) 63
XbaI TCTAGA 1 cut(s) 131
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.