Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042811.1

Orthogroup ID

OG0003006

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 694

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 349 bp

ctgactcccataatctgttctgacgtctctgtagatcctgcacttccagtaatttcccctggtgtagatgagccaaaggaatctccgggaagtgcacaccagagttctcctgcggcagaggataaagacattgatgcggctgtttccagtatcattgcatctagatatgcccagaaaatggttgtagagcgcgtaacgcaccacttgttgcaagggaagatgtttctccaaatccaggtttcgatgcccccagacatcttgattcgagatgcaacagaggtggcaaaagaagctgaagaagagattttgaaggcagcaactaatattattcatgtgagcgttcagctac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux ZT_dimer

Protein Analysis

116

Amino Acids

12.45

Weight (kDa)

4.77

Isoelectric Point (pI)

68.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47830 AT2G47830
fragaria_vesca	FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00080 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110 FvH4_c6g00110
malus_domestica	MD03G1284200.v1.1
prunus_persica	Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1 Prupe.8G255700_v2.0.a1
pyrus_communis	pycom03g22500
rosa_chinensis	RchiOBHm_Chr6g0293181
rosa_laevigata	RLG00000011969
rosa_multiflora	Rmu_co8409675.1_g000001 Rmu_sc0014786.1_g000003 Rmu_sc0039259.1_g000001 Rmu_sc0042811.1_g000001 Rmu_sc0042818.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174370
rosa_rugosa	Rorug06G0233200 Rorug06G0233300
rosa_samantha	Rh6AG345800 Rh6BG353600 Rh6CG360000 Rh6DG346400
rosa_wichuraiana	Rw6G030140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	113, 137
AclWI	GGATC	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	178, 235
AgsI	TTSAA	1 cut(s)	310
AjnI	CCWGG	2 cut(s)	58, 234
AluBI	AGCT	2 cut(s)	293, 346
AluI	AGCT	2 cut(s)	293, 346
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	31
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	60, 236
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	3 cut(s)	114, 138, 315
BlsI	GCNGC	3 cut(s)	115, 139, 316
Bme1390I	CCNGG	3 cut(s)	60, 87, 236
BmrFI	CCNGG	3 cut(s)	60, 87, 236
BmsI	GCATC	4 cut(s)	124, 167, 234, 259
BpuMI	CCSGG	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 235
Bse1I	ACTGG	2 cut(s)	47, 147
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	60, 236
BseDI	CCNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	178, 235
BseMI	GCAATG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	47, 147
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	178, 235
BsmAI	GTCTC	1 cut(s)	31
BsmBI	CGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	2 cut(s)	113, 137
BspFNI	CGCG	1 cut(s)	192
BspPI	GGATC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	47, 147
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	24
Bst2UI	CCWGG	2 cut(s)	60, 236
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 290
BstNI	CCWGG	2 cut(s)	60, 236
BstSCI	CCNGG	3 cut(s)	58, 85, 234
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	97
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
CfoI	GCGC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	4 cut(s)	73, 140, 293, 346
CviKI_1	RGCY	4 cut(s)	73, 140, 293, 346
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	58, 234
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	1 cut(s)	335
FaiI	YATR	3 cut(s)	11, 168, 333
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	3 cut(s)	114, 138, 315
Fsp4HI	GCNGC	3 cut(s)	114, 138, 315
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	3 cut(s)	114, 138, 315
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	4, 80, 262
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	3 cut(s)	162, 259, 266
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	5 cut(s)	41, 95, 158, 211, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 290
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	4 cut(s)	124, 167, 234, 259
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	229, 308, 311
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	1 cut(s)	51
MnlI	CCTC	2 cut(s)	112, 271
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	3 cut(s)	60, 87, 236
MvaI	CCWGG	2 cut(s)	60, 236
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	196, 290
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	80, 262
PflMI	CCANNNNNTGG	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	115, 139, 316
Psp6I	CCWGG	2 cut(s)	58, 234
PspGI	CCWGG	2 cut(s)	58, 234
PsuI	RGATCY	1 cut(s)	34
SatI	GCNGC	3 cut(s)	114, 138, 315
Sau3AI	GATC	1 cut(s)	34
ScrFI	CCNGG	3 cut(s)	60, 87, 236
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	5 cut(s)	27, 240, 282, 295, 348
SfaNI	GCATC	4 cut(s)	124, 167, 234, 259
SfcI	CTRYAG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	2 cut(s)	113, 137
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	58, 85, 234
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	242, 265
TasI	AATT	1 cut(s)	51
TauI	GCSGC	2 cut(s)	116, 140
TfiI	GAWTC	2 cut(s)	80, 262
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	93
XbaI	TCTAGA	1 cut(s)	161
XspI	CTAG	1 cut(s)	162
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.