AT2G47870

glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010825
Physical Location & Seq
Forward (+)
19603163 .. 19603895
733 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47870.1

Sequence Viewer

Length: 312 bp
ATGGAACGAGTAAGAGATTTGGCATCGGAGAAGGCGGCTGTGATATTCACGAAGAGCTCGTGTTGCATGTGTCATAGCATCAAGACTCTCTTCTACGAACTCGGGGCGAGTCCTGCCATCCATGAGCTTGACAAGGACCCGCAAGGCCCTGACATGGAACGGGCCCTCTTCCGGGTATTCGGGTCTAACCCTGCTGTCCCTGCGGTTTTCGTAGGAGGAAGGTACGTCGGCTCAGCTAAAGACGTCATCTCCTTCCACGTGGATGGCTCCCTCAAGCAGATGTTAAAGGCCTCTAACGCCATATGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.26

Weight (kDa)

7.74

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 76 1.1e-11 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47870 AT3G62950
fragaria_vesca FvH4_2g24941
malus_domestica MD03G1278000.v1.1 MD03G1278100.v1.1 MD11G1299900.v1.1 MD11G1300000.v1.1
prunus_persica Prupe.8G254300_v2.0.a1
pyrus_communis pycom03g22140 pycom03g22150
rosa_chinensis RchiOBHm_Chr6g0292871
rosa_laevigata RLG00000011985
rosa_multiflora Rmu_sc0000639.1_g000018
rosa_roxburghii Rroxscaffold_7G00174640
rosa_rugosa Rorug06G0230400
rosa_samantha Rh6AG343700 Rh6BG350900 Rh6CG357900 Rh6DG343800
rosa_wichuraiana Rw6G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 246
AciI CCGC 3 cut(s) 35, 140, 203
AcvI CACGTG 1 cut(s) 259
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 3 cut(s) 154, 171, 172
AluBI AGCT 3 cut(s) 57, 127, 236
AluI AGCT 3 cut(s) 57, 127, 236
Alw21I GWGCWC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 3 cut(s) 145, 162, 288
ApaI GGGCCC 1 cut(s) 166
AspS9I GGNCC 4 cut(s) 136, 146, 162, 163
AsuC2I CCSGG 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 166
BanII GRGCYC 2 cut(s) 59, 166
BauI CACGAG 1 cut(s) 58
BbrPI CACGTG 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 59
BccI CCATC 2 cut(s) 125, 257
BcnI CCSGG 1 cut(s) 173
BisI GCNGC 1 cut(s) 36
BlpI GCTNAGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 4 cut(s) 136, 146, 162, 163
BmiI GGNNCC 3 cut(s) 138, 164, 268
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 2 cut(s) 32, 87
Bpu1102I GCTNAGC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 171, 172
BseGI GGATG 2 cut(s) 117, 268
BseLI CCNNNNNNNGG 3 cut(s) 154, 171, 172
BseMII CTCAG 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 166
BshFI GGCC 3 cut(s) 147, 164, 290
BsiHKAI GWGCWC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 3 cut(s) 154, 171, 172
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 3 cut(s) 147, 164, 290
BsoBI CYCGRG 1 cut(s) 101
Bsp120I GGGCCC 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 59, 166
Bsp1720I GCTNAGC 1 cut(s) 232
BspACI CCGC 3 cut(s) 35, 140, 203
BspANI GGCC 3 cut(s) 147, 164, 290
BspCNI CTCAG 1 cut(s) 245
BspLI GGNNCC 3 cut(s) 138, 164, 268
BspQI GCTCTTC 1 cut(s) 47
BssNI GRCGYC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst6I CTCTTC 3 cut(s) 47, 95, 173
BstACI GRCGYC 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 232
BstF5I GGATG 2 cut(s) 117, 268
BstMWI GCNNNNNNNGC 4 cut(s) 63, 113, 200, 296
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 263
BsuRI GGCC 3 cut(s) 147, 164, 290
BtsCI GGATG 2 cut(s) 117, 268
Cfr13I GGNCC 4 cut(s) 136, 146, 162, 163
Csp6I GTAC 1 cut(s) 223
CviAII CATG 3 cut(s) 67, 122, 154
CviJI RGCY 9 cut(s) 38, 57, 127, 147, 164, 231, 236, 267, 290
CviKI_1 RGCY 9 cut(s) 38, 57, 127, 147, 164, 231, 236, 267, 290
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 232
Eam1104I CTCTTC 3 cut(s) 47, 95, 173
EarI CTCTTC 3 cut(s) 47, 95, 173
Ecl136II GAGCTC 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 290
Eco24I GRGCYC 2 cut(s) 59, 166
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 57
Eco72I CACGTG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 57
EcoO109I RGGNCCY 3 cut(s) 136, 146, 163
EcoT38I GRGCYC 2 cut(s) 59, 166
FaeI CATG 3 cut(s) 70, 125, 157
FaiI YATR 6 cut(s) 68, 75, 123, 155, 302, 304
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 1 cut(s) 182
FatI CATG 3 cut(s) 66, 121, 153
FauI CCCGC 1 cut(s) 147
FauNDI CATATG 1 cut(s) 302
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 104, 275
FriOI GRGCYC 2 cut(s) 59, 166
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 3 cut(s) 147, 164, 290
HapII CCGG 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 3 cut(s) 70, 125, 157
HinfI GANTC 2 cut(s) 85, 109
HpaII CCGG 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 49, 82
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 25, 213, 262
HpyCH4IV ACGT 3 cut(s) 225, 243, 258
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 113, 200, 296
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 3 cut(s) 225, 243, 258
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 3 cut(s) 70, 125, 157
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 5 cut(s) 126, 162, 185, 204, 213
LweI GCATC 2 cut(s) 32, 87
MaeII ACGT 3 cut(s) 225, 243, 258
MboII GAAGA 3 cut(s) 64, 82, 160
MhlI GDGCHC 2 cut(s) 59, 166
MlyI GAGTC 2 cut(s) 79, 118
MnlI CCTC 4 cut(s) 176, 209, 281, 301
MseI TTAA 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 173
MwoI GCNNNNNNNGC 4 cut(s) 63, 113, 200, 296
NciI CCSGG 1 cut(s) 173
NdeI CATATG 1 cut(s) 302
NlaIII CATG 3 cut(s) 70, 125, 157
NlaIV GGNNCC 3 cut(s) 138, 164, 268
NspI RCATGY 1 cut(s) 70
PceI AGGCCT 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 2 cut(s) 79, 117
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 2 cut(s) 79, 117
Ppu21I YACGTR 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 136
PspCI CACGTG 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 138, 164, 268
PspOMI GGGCCC 1 cut(s) 162
PspPI GGNCC 4 cut(s) 136, 146, 162, 163
PspPPI RGGWCCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 1 cut(s) 36
Sau96I GGNCC 4 cut(s) 136, 146, 162, 163
SchI GAGTC 2 cut(s) 79, 118
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 2 cut(s) 59, 166
SetI ASST 7 cut(s) 59, 129, 224, 228, 238, 246, 261
SfaNI GCATC 2 cut(s) 32, 87
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 3 cut(s) 35, 140, 203
SstI GAGCTC 1 cut(s) 59
StuI AGGCCT 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 171
TaiI ACGT 3 cut(s) 228, 246, 261
TauI GCSGC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 136
XceI RCATGY 1 cut(s) 70
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.