MD11G1300000.v1.1

glutaredoxin-C11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010825
Physical Location & Seq
Reverse (-)
41617492 .. 41617800
309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1300000.v1.1.491

Sequence Viewer

Length: 309 bp
ATGGAGAGTGTGAGACAGTTGGCTTCAGAGAAGGCCGCTGTGATCTTCACAAAGAGCTCCTGCTGCATATGCCACAGCGTGAAGACGCTTTTCTACGAGCTCGGAGCAAGCCCGGCGATTCATGAGCTCGACCGGTACACCAATGGGAGGGACATGGAGTGGGCATTGAGGAACCTCGGCTGCAATCCTGCTCTCCCTGCTGTGTTCATAGGTGGGAAATATGTCGGCTCGTCGAAAGATATCATATCCTACCATGTCGATGGATCTCTAAAACAAATGCTCAAAGATGCAAAAGCCATCTGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.3

Weight (kDa)

8.38

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 1.7e-10 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47870 AT3G62950
fragaria_vesca FvH4_2g24941
malus_domestica MD03G1278000.v1.1 MD03G1278100.v1.1 MD11G1299900.v1.1 MD11G1300000.v1.1
prunus_persica Prupe.8G254300_v2.0.a1
pyrus_communis pycom03g22140 pycom03g22150
rosa_chinensis RchiOBHm_Chr6g0292871
rosa_laevigata RLG00000011985
rosa_multiflora Rmu_sc0000639.1_g000018
rosa_roxburghii Rroxscaffold_7G00174640
rosa_rugosa Rorug06G0230400
rosa_samantha Rh6AG343700 Rh6BG350900 Rh6CG357900 Rh6DG343800
rosa_wichuraiana Rw6G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 79
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 147
AgeI ACCGGT 1 cut(s) 132
AluBI AGCT 3 cut(s) 57, 100, 127
AluI AGCT 3 cut(s) 57, 100, 127
Alw21I GWGCWC 3 cut(s) 59, 102, 129
Alw26I GTCTC 1 cut(s) 7
AlwI GGATC 1 cut(s) 271
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 63, 180
AsiGI ACCGGT 1 cut(s) 132
AsuC2I CCSGG 1 cut(s) 113
BanII GRGCYC 3 cut(s) 59, 102, 129
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 3 cut(s) 59, 102, 129
BbvI GCAGC 2 cut(s) 50, 167
BccI CCATC 2 cut(s) 254, 305
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 7
BfaI CTAG 1 cut(s) 307
BisI GCNGC 3 cut(s) 36, 64, 181
BlsI GCNGC 3 cut(s) 37, 65, 182
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse118I RCCGGY 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 50, 167
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 35
BshTI ACCGGT 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 3 cut(s) 59, 102, 129
BsiSI CCGG 2 cut(s) 113, 133
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 3 cut(s) 59, 102, 129
Bsp143I GATC 2 cut(s) 42, 263
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 35
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 42, 263
Bst4CI ACNGT 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 45, 266
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 2 cut(s) 42, 263
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 197
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 50, 167
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 109
CciI TCATGA 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 132
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 136
CspAI ACCGGT 1 cut(s) 132
CviAII CATG 3 cut(s) 122, 154, 254
CviJI RGCY 9 cut(s) 23, 35, 57, 100, 111, 127, 180, 228, 296
CviKI_1 RGCY 9 cut(s) 23, 35, 57, 100, 111, 127, 180, 228, 296
CviQI GTAC 1 cut(s) 136
DpnI GATC 2 cut(s) 44, 265
DpnII GATC 2 cut(s) 42, 263
DraIII CACNNNGTG 1 cut(s) 79
Ecl136II GAGCTC 3 cut(s) 57, 100, 127
Eco24I GRGCYC 3 cut(s) 59, 102, 129
Eco32I GATATC 1 cut(s) 241
Eco53kI GAGCTC 3 cut(s) 57, 100, 127
Eco57I CTGAAG 1 cut(s) 9
EcoICRI GAGCTC 3 cut(s) 57, 100, 127
EcoRV GATATC 1 cut(s) 241
EcoT38I GRGCYC 3 cut(s) 59, 102, 129
FaeI CATG 3 cut(s) 125, 157, 257
FaiI YATR 8 cut(s) 68, 70, 123, 155, 209, 222, 245, 255
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 121, 153, 253
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 36, 64, 181
FriOI GRGCYC 3 cut(s) 59, 102, 129
Fsp4HI GCNGC 3 cut(s) 36, 64, 181
FspBI CTAG 1 cut(s) 307
GluI GCNGC 3 cut(s) 36, 64, 181
HaeIII GGCC 1 cut(s) 35
HapII CCGG 2 cut(s) 113, 133
HgaI GACGC 1 cut(s) 94
Hin1II CATG 3 cut(s) 125, 157, 257
HinfI GANTC 1 cut(s) 118
HpaII CCGG 2 cut(s) 113, 133
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 28, 104
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 3 cut(s) 66, 183, 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 197
Hsp92II CATG 3 cut(s) 125, 157, 257
Kzo9I GATC 2 cut(s) 42, 263
LmnI GCTCC 2 cut(s) 62, 104
LpnPI CCDG 6 cut(s) 73, 126, 146, 201, 210, 286
Lsp1109I GCAGC 2 cut(s) 50, 167
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 307
MalI GATC 2 cut(s) 44, 265
MboI GATC 2 cut(s) 42, 263
MboII GAAGA 2 cut(s) 37, 94
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 3 cut(s) 59, 102, 129
MnlI CCTC 3 cut(s) 141, 162, 185
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 2 cut(s) 113, 133
MspR9I CCNGG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 197
NciI CCSGG 1 cut(s) 113
NdeI CATATG 1 cut(s) 68
NdeII GATC 2 cut(s) 42, 263
NlaIII CATG 3 cut(s) 125, 157, 257
NlaIV GGNNCC 1 cut(s) 173
NmeAIII GCCGAG 1 cut(s) 156
PagI TCATGA 1 cut(s) 121
PfeI GAWTC 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 132
PkrI GCNGC 3 cut(s) 37, 65, 182
Psp124BI GAGCTC 3 cut(s) 59, 102, 129
PspN4I GGNNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 3 cut(s) 59, 102, 129
SatI GCNGC 3 cut(s) 36, 64, 181
Sau3AI GATC 2 cut(s) 42, 263
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 3 cut(s) 59, 102, 129
SetI ASST 5 cut(s) 59, 102, 129, 177, 214
SfaNI GCATC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 258
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 307
SstI GAGCTC 3 cut(s) 59, 102, 129
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 18
TaqI TCGA 3 cut(s) 129, 233, 258
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 118
TseI GCWGC 2 cut(s) 63, 180
TspDTI ATGAA 2 cut(s) 110, 196
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.