pycom03g22140

glutaredoxin-C11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0010825
Physical Location & Seq
Reverse (-)
22309066 .. 22309374
309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g22140.1

Sequence Viewer

Length: 309 bp
ATGGAGAATGTGAGAGAGTTGGCTTCAGAGAAGGCTGCTGTGATCTTCACAAAGAGCTCCTGCTGTATATGCCACAGCGTGAAGACGCTTTTCTACGAGCTCGGTGCAAGTCCGGCGATTCACGAGCTCGACCGATGCGCCAATGGGAGGGACATGGAGTGTGCATTGAGAAACCTCGGATGCAATCCTGCTCTTCCTGCTGTGTTCATAGGTGGGAAATATGTCGGCTCGTCGAAAGATATCATATCCTACCATGTGGATGGATCTCTAAAGAAAATGCTGAAAGATGCACAAGCAATCTGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.15

Weight (kDa)

7.6

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 1.1e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47870 AT3G62950
fragaria_vesca FvH4_2g24941
malus_domestica MD03G1278000.v1.1 MD03G1278100.v1.1 MD11G1299900.v1.1 MD11G1300000.v1.1
prunus_persica Prupe.8G254300_v2.0.a1
pyrus_communis pycom03g22140 pycom03g22150
rosa_chinensis RchiOBHm_Chr6g0292871
rosa_laevigata RLG00000011985
rosa_multiflora Rmu_sc0000639.1_g000018
rosa_roxburghii Rroxscaffold_7G00174640
rosa_rugosa Rorug06G0230400
rosa_samantha Rh6AG343700 Rh6BG350900 Rh6CG357900 Rh6DG343800
rosa_wichuraiana Rw6G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 147
AluBI AGCT 3 cut(s) 57, 100, 127
AluI AGCT 3 cut(s) 57, 100, 127
Alw21I GWGCWC 3 cut(s) 59, 102, 129
AlwI GGATC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 140
BanII GRGCYC 3 cut(s) 59, 102, 129
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 3 cut(s) 59, 102, 129
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 254
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BfaI CTAG 1 cut(s) 307
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmsI GCATC 3 cut(s) 125, 170, 277
BpiI GAAGAC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 2 cut(s) 185, 265
BseLI CCNNNNNNNGG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 3 cut(s) 59, 102, 129
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 59, 102, 129
Bsp143I GATC 2 cut(s) 42, 263
BspPI GGATC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 42, 263
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 198
BstF5I GGATG 2 cut(s) 185, 265
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 45, 266
BstMBI GATC 2 cut(s) 42, 263
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 69, 113, 197
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 1 cut(s) 263
BtsCI GGATG 2 cut(s) 185, 265
CfoI GCGC 1 cut(s) 140
CseI GACGC 1 cut(s) 94
CviAII CATG 2 cut(s) 154, 254
CviJI RGCY 6 cut(s) 23, 35, 57, 100, 127, 228
CviKI_1 RGCY 6 cut(s) 23, 35, 57, 100, 127, 228
DpnI GATC 2 cut(s) 44, 265
DpnII GATC 2 cut(s) 42, 263
DraIII CACNNNGTG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 3 cut(s) 57, 100, 127
Eco24I GRGCYC 3 cut(s) 59, 102, 129
Eco32I GATATC 1 cut(s) 241
Eco53kI GAGCTC 3 cut(s) 57, 100, 127
Eco57I CTGAAG 1 cut(s) 9
EcoICRI GAGCTC 3 cut(s) 57, 100, 127
EcoRV GATATC 1 cut(s) 241
EcoT38I GRGCYC 3 cut(s) 59, 102, 129
FaeI CATG 2 cut(s) 157, 257
FaiI YATR 7 cut(s) 68, 70, 155, 209, 222, 245, 255
FaqI GGGAC 1 cut(s) 164
FatI CATG 2 cut(s) 153, 253
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 192, 272
FriOI GRGCYC 3 cut(s) 59, 102, 129
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 307
GlaI GCGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 36
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 140
Hin1II CATG 2 cut(s) 157, 257
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 28, 179
Hpy188III TCNNGA 1 cut(s) 122
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 25
HpyCH4V TGCA 4 cut(s) 107, 164, 183, 290
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 113, 197
Hsp92II CATG 2 cut(s) 157, 257
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 42, 263
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 73, 126, 201, 210, 286
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 3 cut(s) 125, 170, 277
MaeI CTAG 1 cut(s) 307
MalI GATC 2 cut(s) 44, 265
MboI GATC 2 cut(s) 42, 263
MboII GAAGA 3 cut(s) 37, 94, 185
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 3 cut(s) 59, 102, 129
MnlI CCTC 2 cut(s) 141, 185
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 69, 113, 197
NdeII GATC 2 cut(s) 42, 263
NlaIII CATG 2 cut(s) 157, 257
PciSI GCTCTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 37
Psp124BI GAGCTC 3 cut(s) 59, 102, 129
PsuI RGATCY 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 3 cut(s) 59, 102, 129
SapI GCTCTTC 1 cut(s) 198
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 42, 263
SduI GDGCHC 3 cut(s) 59, 102, 129
SetI ASST 5 cut(s) 59, 102, 129, 177, 214
SfaNI GCATC 3 cut(s) 125, 170, 277
SmiMI CAYNNNNRTG 1 cut(s) 258
SspMI CTAG 1 cut(s) 307
SstI GAGCTC 3 cut(s) 59, 102, 129
TaqI TCGA 2 cut(s) 129, 233
TaqII GACCGA 1 cut(s) 147
TfiI GAWTC 1 cut(s) 118
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 196
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.