MD03G1278100.v1.1

glutaredoxin-C11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0010825
Physical Location & Seq
Reverse (-)
36016655 .. 36016963
309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1278100.v1.1.491

Sequence Viewer

Length: 309 bp
ATGGAGACCGTGAGACAGTTGGCTTCAGAGAAGGCTGCTGTGATCTTCACAAAGAGCTCATGCTGCATATGCCACAGCGTGAAGACGCTTTTCTACGAGCTCGGTGCAAGCCCCGCTATTCATGAGCTCGACCGATACGCCAATGGTAGGGACATGGAGTGGGCATTGAGGAACCTTGGCTGCAATCCTGCTCTCCCTGCTGTGTTCATAGGTGGAAAATATGTTGGCTCCTCAAAAGATATCATATCGTACCATGTCGATGGATCTCTAAAACAAATGCTCAAAGATGCAAAAGCCATCTGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.28

Weight (kDa)

8.38

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 1.2e-10 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47870 AT3G62950
fragaria_vesca FvH4_2g24941
malus_domestica MD03G1278000.v1.1 MD03G1278100.v1.1 MD11G1299900.v1.1 MD11G1300000.v1.1
prunus_persica Prupe.8G254300_v2.0.a1
pyrus_communis pycom03g22140 pycom03g22150
rosa_chinensis RchiOBHm_Chr6g0292871
rosa_laevigata RLG00000011985
rosa_multiflora Rmu_sc0000639.1_g000018
rosa_roxburghii Rroxscaffold_7G00174640
rosa_rugosa Rorug06G0230400
rosa_samantha Rh6AG343700 Rh6BG350900 Rh6CG357900 Rh6DG343800
rosa_wichuraiana Rw6G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 79
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 147
AluBI AGCT 3 cut(s) 57, 100, 127
AluI AGCT 3 cut(s) 57, 100, 127
Alw21I GWGCWC 3 cut(s) 59, 102, 129
Alw26I GTCTC 1 cut(s) 7
AlwI GGATC 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 35, 63, 180
BanII GRGCYC 3 cut(s) 59, 102, 129
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 3 cut(s) 59, 102, 129
BbvI GCAGC 3 cut(s) 22, 50, 167
BccI CCATC 2 cut(s) 254, 305
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcoDI GTCTC 1 cut(s) 7
BfaI CTAG 1 cut(s) 307
BisI GCNGC 3 cut(s) 36, 64, 181
BlsI GCNGC 3 cut(s) 37, 65, 182
BmiI GGNNCC 2 cut(s) 173, 229
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 220
BseXI GCAGC 3 cut(s) 22, 50, 167
Bsh1285I CGRYCG 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 3 cut(s) 59, 102, 129
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 59, 102, 129
Bsp143I GATC 2 cut(s) 42, 263
BspACI CCGC 1 cut(s) 114
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 173, 229
BspPI GGATC 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 42, 263
BssT1I CCWWGG 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 10, 18
BstC8I GCNNGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 45, 266
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 2 cut(s) 42, 263
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 197
BstV1I GCAGC 3 cut(s) 22, 50, 167
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 109
CciI TCATGA 1 cut(s) 121
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 250
CviAII CATG 4 cut(s) 60, 122, 154, 254
CviJI RGCY 9 cut(s) 23, 35, 57, 100, 111, 127, 180, 228, 296
CviKI_1 RGCY 9 cut(s) 23, 35, 57, 100, 111, 127, 180, 228, 296
CviQI GTAC 1 cut(s) 250
DpnI GATC 2 cut(s) 44, 265
DpnII GATC 2 cut(s) 42, 263
DraIII CACNNNGTG 1 cut(s) 79
Ecl136II GAGCTC 3 cut(s) 57, 100, 127
Eco130I CCWWGG 1 cut(s) 175
Eco24I GRGCYC 3 cut(s) 59, 102, 129
Eco32I GATATC 1 cut(s) 241
Eco53kI GAGCTC 3 cut(s) 57, 100, 127
Eco57I CTGAAG 1 cut(s) 9
EcoICRI GAGCTC 3 cut(s) 57, 100, 127
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 175
EcoT38I GRGCYC 3 cut(s) 59, 102, 129
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 4 cut(s) 63, 125, 157, 257
FaiI YATR 9 cut(s) 61, 68, 70, 123, 155, 209, 222, 245, 255
FaqI GGGAC 1 cut(s) 164
FatI CATG 4 cut(s) 59, 121, 153, 253
FauI CCCGC 1 cut(s) 121
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 36, 64, 181
FriOI GRGCYC 3 cut(s) 59, 102, 129
Fsp4HI GCNGC 3 cut(s) 36, 64, 181
FspBI CTAG 1 cut(s) 307
GluI GCNGC 3 cut(s) 36, 64, 181
HgaI GACGC 1 cut(s) 94
Hin1II CATG 4 cut(s) 63, 125, 157, 257
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 10, 18
HpyCH4V TGCA 4 cut(s) 66, 107, 183, 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 197
Hsp92II CATG 4 cut(s) 63, 125, 157, 257
Kzo9I GATC 2 cut(s) 42, 263
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 3 cut(s) 201, 210, 286
Lsp1109I GCAGC 3 cut(s) 22, 50, 167
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 307
MalI GATC 2 cut(s) 44, 265
MboI GATC 2 cut(s) 42, 263
MboII GAAGA 2 cut(s) 37, 94
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 3 cut(s) 59, 102, 129
MnlI CCTC 2 cut(s) 162, 241
MslI CAYNNNNRTG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 197
NdeI CATATG 1 cut(s) 68
NdeII GATC 2 cut(s) 42, 263
NlaIII CATG 4 cut(s) 63, 125, 157, 257
NlaIV GGNNCC 2 cut(s) 173, 229
PagI TCATGA 1 cut(s) 121
PkrI GCNGC 3 cut(s) 37, 65, 182
Psp124BI GAGCTC 3 cut(s) 59, 102, 129
PspN4I GGNNCC 2 cut(s) 173, 229
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 3 cut(s) 59, 102, 129
SatI GCNGC 3 cut(s) 36, 64, 181
Sau3AI GATC 2 cut(s) 42, 263
SduI GDGCHC 3 cut(s) 59, 102, 129
SetI ASST 5 cut(s) 59, 102, 129, 177, 214
SfaNI GCATC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 258
SsiI CCGC 1 cut(s) 114
SspMI CTAG 1 cut(s) 307
SstI GAGCTC 3 cut(s) 59, 102, 129
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 2 cut(s) 10, 18
TaqI TCGA 2 cut(s) 129, 258
TaqII GACCGA 1 cut(s) 147
TseI GCWGC 3 cut(s) 35, 63, 180
TspDTI ATGAA 2 cut(s) 110, 196
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.