Rmu_sc0000639.1_g000018

glutaredoxin-C11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000639.1
OG0010825
Physical Location & Seq
Forward (+)
111256 .. 111564
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000639.1_g000018.1.cds

Sequence Viewer

Length: 309 bp
atggagagtgttagagaattggcttcagagaaggcagcagtgatcttcaccaagagctcatgctgcatatgccacagtgtcaagtcgcttttctacgagctcggtgcaagccctgctattcacgagattgatcgatactcaaatgggagggacatggagtcagcgttaaggcagctcgggtgcaacccttctttccctgctgtgttcataggtgggaagtatgtaggctcttcaaaggatatcatatccctccatgttgatgggtctctaaagcaaatgctcaaagatgcaagagccatctggttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

7.69

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47870 AT3G62950
fragaria_vesca FvH4_2g24941
malus_domestica MD03G1278000.v1.1 MD03G1278100.v1.1 MD11G1299900.v1.1 MD11G1300000.v1.1
prunus_persica Prupe.8G254300_v2.0.a1
pyrus_communis pycom03g22140 pycom03g22150
rosa_chinensis RchiOBHm_Chr6g0292871
rosa_laevigata RLG00000011985
rosa_multiflora Rmu_sc0000639.1_g000018
rosa_roxburghii Rroxscaffold_7G00174640
rosa_rugosa Rorug06G0230400
rosa_samantha Rh6AG343700 Rh6BG350900 Rh6CG357900 Rh6DG343800
rosa_wichuraiana Rw6G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 9
AgsI TTSAA 1 cut(s) 234
AhdI GACNNNNNGTC 1 cut(s) 157
AluBI AGCT 3 cut(s) 57, 100, 175
AluI AGCT 3 cut(s) 57, 100, 175
Alw21I GWGCWC 2 cut(s) 59, 102
Alw26I GTCTC 1 cut(s) 270
Ama87I CYCGRG 1 cut(s) 176
ApeKI GCWGC 3 cut(s) 35, 63, 172
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 176
BanII GRGCYC 2 cut(s) 59, 102
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 59, 102
BbvI GCAGC 3 cut(s) 47, 50, 184
BccI CCATC 2 cut(s) 254, 305
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 307
BisI GCNGC 3 cut(s) 36, 64, 173
BlsI GCNGC 3 cut(s) 37, 65, 174
BmeRI GACNNNNNGTC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 176
BmsI GCATC 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 133
BsaI GGTCTC 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
BseCI ATCGAT 1 cut(s) 133
BseXI GCAGC 3 cut(s) 47, 50, 184
BshVI ATCGAT 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 59, 102
BsiHKCI CYCGRG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 59, 102
Bsp143I GATC 2 cut(s) 42, 130
BspDI ATCGAT 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 270
BssMI GATC 2 cut(s) 42, 130
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 45, 133
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 42, 130
BstMWI GCNNNNNNNGC 3 cut(s) 63, 69, 113
BstV1I GCAGC 3 cut(s) 47, 50, 184
BstXI CCANNNNNNTGG 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 82
Cac8I GCNNGC 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 133
CviAII CATG 3 cut(s) 60, 154, 254
CviJI RGCY 7 cut(s) 23, 57, 100, 111, 175, 228, 296
CviKI_1 RGCY 7 cut(s) 23, 57, 100, 111, 175, 228, 296
DpnI GATC 2 cut(s) 44, 132
DpnII GATC 2 cut(s) 42, 130
DriI GACNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 235
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 235
Ecl136II GAGCTC 2 cut(s) 57, 100
Eco24I GRGCYC 2 cut(s) 59, 102
Eco31I GGTCTC 1 cut(s) 270
Eco32I GATATC 1 cut(s) 241
Eco53kI GAGCTC 2 cut(s) 57, 100
Eco57I CTGAAG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 2 cut(s) 57, 100
EcoRV GATATC 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 59, 102
FaeI CATG 3 cut(s) 63, 157, 257
FaiI YATR 8 cut(s) 61, 68, 70, 155, 209, 222, 245, 255
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 59, 153, 253
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 36, 64, 173
FriOI GRGCYC 2 cut(s) 59, 102
Fsp4HI GCNGC 3 cut(s) 36, 64, 173
FspBI CTAG 1 cut(s) 307
GluI GCNGC 3 cut(s) 36, 64, 173
Hin1II CATG 3 cut(s) 63, 157, 257
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 25, 198
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4V TGCA 4 cut(s) 66, 107, 183, 290
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 69, 113
Hsp92II CATG 3 cut(s) 63, 157, 257
Kzo9I GATC 2 cut(s) 42, 130
LguI GCTCTTC 1 cut(s) 235
LpnPI CCDG 3 cut(s) 126, 210, 286
Lsp1109I GCAGC 3 cut(s) 47, 50, 184
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 307
MalI GATC 2 cut(s) 44, 132
MboI GATC 2 cut(s) 42, 130
MboII GAAGA 2 cut(s) 37, 222
MhlI GDGCHC 2 cut(s) 59, 102
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 2 cut(s) 141, 260
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 63, 69, 113
NdeI CATATG 1 cut(s) 68
NdeII GATC 2 cut(s) 42, 130
NlaIII CATG 3 cut(s) 63, 157, 257
PciSI GCTCTTC 1 cut(s) 235
PkrI GCNGC 3 cut(s) 37, 65, 174
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp124BI GAGCTC 2 cut(s) 59, 102
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 2 cut(s) 59, 102
SapI GCTCTTC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 3 cut(s) 36, 64, 173
Sau3AI GATC 2 cut(s) 42, 130
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 2 cut(s) 59, 102
SetI ASST 4 cut(s) 59, 102, 177, 214
SfaNI GCATC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 1 cut(s) 17
SspMI CTAG 1 cut(s) 307
SstI GAGCTC 2 cut(s) 59, 102
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 133
TasI AATT 1 cut(s) 17
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 2 cut(s) 45, 82
TseI GCWGC 3 cut(s) 35, 63, 172
TspDTI ATGAA 1 cut(s) 196
TspRI CASTG 2 cut(s) 45, 82
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.