MD11G1299900.v1.1

glutaredoxin-C11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010825
Physical Location & Seq
Reverse (-)
41614816 .. 41615124
309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1299900.v1.1.491

Sequence Viewer

Length: 309 bp
ATGGAGAGTGTGAGAGAGTTGGCTTCAGAGAAGGCTGCTGTGATCTTCACAAAGAGCTCCTGCTGCATATGCCACAGCGTGAAGACGCTTTTCTACGAGCTCGGAGCAAGCCCGGCGATTCACGAGCTAGACCGATACGCCAATGGGAGGGACATGGAGTGGGCACTGAGAAACCTCGGCTGCAACCCTGCTCTTCCTGCTGTGTTCATAGGCGGGAAATATGTCGGCTCGTCGAAAGATATCATATCCTACCATGTCGATGGATCTCTAAAGCAAATGCTCAAAGATGCACAAGCCATCTGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.27

Weight (kDa)

6.81

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 1.2e-10 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47870 AT3G62950
fragaria_vesca FvH4_2g24941
malus_domestica MD03G1278000.v1.1 MD03G1278100.v1.1 MD11G1299900.v1.1 MD11G1300000.v1.1
prunus_persica Prupe.8G254300_v2.0.a1
pyrus_communis pycom03g22140 pycom03g22150
rosa_chinensis RchiOBHm_Chr6g0292871
rosa_laevigata RLG00000011985
rosa_multiflora Rmu_sc0000639.1_g000018
rosa_roxburghii Rroxscaffold_7G00174640
rosa_rugosa Rorug06G0230400
rosa_samantha Rh6AG343700 Rh6BG350900 Rh6CG357900 Rh6DG343800
rosa_wichuraiana Rw6G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 147
AluBI AGCT 3 cut(s) 57, 100, 127
AluI AGCT 3 cut(s) 57, 100, 127
Alw21I GWGCWC 2 cut(s) 59, 102
AlwI GGATC 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 35, 63, 180
AsuC2I CCSGG 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 166
BanII GRGCYC 2 cut(s) 59, 102
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 2 cut(s) 59, 102
BbvI GCAGC 3 cut(s) 22, 50, 167
BccI CCATC 2 cut(s) 254, 305
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 2 cut(s) 128, 307
BisI GCNGC 3 cut(s) 36, 64, 181
BlsI GCNGC 3 cut(s) 37, 65, 182
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 3 cut(s) 22, 50, 167
BsiHKAI GWGCWC 2 cut(s) 59, 102
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 59, 102, 166
Bsp143I GATC 2 cut(s) 42, 263
BspACI CCGC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 159
BspPI GGATC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 42, 263
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 167
BstKTI GATC 2 cut(s) 45, 266
BstMBI GATC 2 cut(s) 42, 263
BstMWI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 197
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 22, 50, 167
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 109
CseI GACGC 1 cut(s) 94
CviAII CATG 2 cut(s) 154, 254
CviJI RGCY 9 cut(s) 23, 35, 57, 100, 111, 127, 180, 228, 296
CviKI_1 RGCY 9 cut(s) 23, 35, 57, 100, 111, 127, 180, 228, 296
DdeI CTNAG 1 cut(s) 167
DpnI GATC 2 cut(s) 44, 265
DpnII GATC 2 cut(s) 42, 263
DraIII CACNNNGTG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 2 cut(s) 57, 100
Eco24I GRGCYC 2 cut(s) 59, 102
Eco32I GATATC 1 cut(s) 241
Eco53kI GAGCTC 2 cut(s) 57, 100
Eco57I CTGAAG 1 cut(s) 9
EcoICRI GAGCTC 2 cut(s) 57, 100
EcoRV GATATC 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 59, 102
FaeI CATG 2 cut(s) 157, 257
FaiI YATR 7 cut(s) 68, 70, 155, 209, 222, 245, 255
FaqI GGGAC 1 cut(s) 164
FatI CATG 2 cut(s) 153, 253
FauI CCCGC 1 cut(s) 206
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 36, 64, 181
FriOI GRGCYC 2 cut(s) 59, 102
Fsp4HI GCNGC 3 cut(s) 36, 64, 181
FspBI CTAG 2 cut(s) 128, 307
GluI GCNGC 3 cut(s) 36, 64, 181
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 157, 257
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 28, 104
Hpy188III TCNNGA 1 cut(s) 122
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 66, 183, 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 197
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 2 cut(s) 157, 257
Kzo9I GATC 2 cut(s) 42, 263
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 62, 104
LpnPI CCDG 5 cut(s) 73, 126, 201, 210, 286
Lsp1109I GCAGC 3 cut(s) 22, 50, 167
LweI GCATC 1 cut(s) 277
MaeI CTAG 2 cut(s) 128, 307
MalI GATC 2 cut(s) 44, 265
MboI GATC 2 cut(s) 42, 263
MboII GAAGA 3 cut(s) 37, 94, 185
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 3 cut(s) 59, 102, 166
MnlI CCTC 2 cut(s) 141, 185
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 197
NciI CCSGG 1 cut(s) 113
NdeI CATATG 1 cut(s) 68
NdeII GATC 2 cut(s) 42, 263
NlaIII CATG 2 cut(s) 157, 257
NmeAIII GCCGAG 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 3 cut(s) 37, 65, 182
Psp124BI GAGCTC 2 cut(s) 59, 102
PsuI RGATCY 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 2 cut(s) 59, 102
SapI GCTCTTC 1 cut(s) 198
SatI GCNGC 3 cut(s) 36, 64, 181
Sau3AI GATC 2 cut(s) 42, 263
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 3 cut(s) 59, 102, 166
SetI ASST 4 cut(s) 59, 102, 129, 177
SfaNI GCATC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 258
SsiI CCGC 1 cut(s) 213
SspMI CTAG 2 cut(s) 128, 307
SstI GAGCTC 2 cut(s) 59, 102
StyD4I CCNGG 1 cut(s) 111
TaqI TCGA 2 cut(s) 233, 258
TaqII GACCGA 1 cut(s) 147
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 1 cut(s) 171
TseI GCWGC 3 cut(s) 35, 63, 180
TspDTI ATGAA 1 cut(s) 196
TspRI CASTG 1 cut(s) 171
XspI CTAG 2 cut(s) 128, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.