AT3G62950

glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010825
Physical Location & Seq
Forward (+)
23266227 .. 23267090
864 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62950.1

Sequence Viewer

Length: 312 bp
ATGGAGAGAATAAGAGATTTGTCGTCGAAGAAAGCGGCGGTGATATTCACAAAGAGCTCATGTTGTATGTGCCATAGCATCAAGACGCTATTCTACGAACTAGGCGCTAGTCCGGCGATCCATGAGCTCGACAAAGACCCTGAAGGCCGTGAAATGGAACGGGCCCTACGTGCCCTCGGCTCATCGAACCCGGCGGTTCCAGCTGTTTTCGTTGGAGGAAGGTACATCGGATCAGCCAAAGACATCATCTCATTCCACGTGGACGGGTCACTCAAGCAGATGCTTAAAGACGCTAAGGCCATTTGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.31

Weight (kDa)

8.86

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 76 2.8e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47870 AT3G62950
fragaria_vesca FvH4_2g24941
malus_domestica MD03G1278000.v1.1 MD03G1278100.v1.1 MD11G1299900.v1.1 MD11G1300000.v1.1
prunus_persica Prupe.8G254300_v2.0.a1
pyrus_communis pycom03g22140 pycom03g22150
rosa_chinensis RchiOBHm_Chr6g0292871
rosa_laevigata RLG00000011985
rosa_multiflora Rmu_sc0000639.1_g000018
rosa_roxburghii Rroxscaffold_7G00174640
rosa_rugosa Rorug06G0230400
rosa_samantha Rh6AG343700 Rh6BG350900 Rh6CG357900 Rh6DG343800
rosa_wichuraiana Rw6G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 35, 38, 194
AclWI GGATC 2 cut(s) 112, 238
AcuI CTGAAG 1 cut(s) 162
AcvI CACGTG 1 cut(s) 259
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 154
AluBI AGCT 3 cut(s) 57, 127, 203
AluI AGCT 3 cut(s) 57, 127, 203
Alw21I GWGCWC 2 cut(s) 59, 129
AlwI GGATC 2 cut(s) 112, 238
AoxI GGCC 3 cut(s) 145, 162, 297
ApaI GGGCCC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 162, 163
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 166, 175
BanII GRGCYC 3 cut(s) 59, 129, 166
BbrPI CACGTG 1 cut(s) 259
Bbv12I GWGCWC 2 cut(s) 59, 129
BceAI ACGGC 1 cut(s) 132
BcnI CCSGG 1 cut(s) 191
BfaI CTAG 2 cut(s) 101, 108
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 162, 163
BmiI GGNNCC 2 cut(s) 164, 198
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 87, 270
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 191
BsaAI YACGTR 2 cut(s) 170, 259
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 154
BseSI GKGCMC 2 cut(s) 166, 175
BshFI GGCC 3 cut(s) 147, 164, 299
BsiHKAI GWGCWC 2 cut(s) 59, 129
BsiSI CCGG 2 cut(s) 113, 191
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 3 cut(s) 147, 164, 299
Bsp120I GGGCCC 1 cut(s) 162
Bsp1286I GDGCHC 4 cut(s) 59, 129, 166, 175
Bsp143I GATC 2 cut(s) 117, 230
BspACI CCGC 3 cut(s) 35, 38, 194
BspANI GGCC 3 cut(s) 147, 164, 299
BspLI GGNNCC 2 cut(s) 164, 198
BspPI GGATC 2 cut(s) 112, 238
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 117, 230
BstBAI YACGTR 2 cut(s) 170, 259
BstDEI CTNAG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 120, 233
BstMBI GATC 2 cut(s) 117, 230
BstMWI GCNNNNNNNGC 3 cut(s) 113, 170, 200
BstSCI CCNGG 1 cut(s) 189
BstSLI GKGCMC 2 cut(s) 166, 175
BsuRI GGCC 3 cut(s) 147, 164, 299
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 162, 163
CseI GACGC 2 cut(s) 94, 299
Csp6I GTAC 1 cut(s) 223
CviAII CATG 2 cut(s) 60, 122
CviJI RGCY 8 cut(s) 57, 127, 147, 164, 180, 203, 236, 299
CviKI_1 RGCY 8 cut(s) 57, 127, 147, 164, 180, 203, 236, 299
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 119, 232
DpnII GATC 2 cut(s) 117, 230
Ecl136II GAGCTC 2 cut(s) 57, 127
Eco24I GRGCYC 3 cut(s) 59, 129, 166
Eco53kI GAGCTC 2 cut(s) 57, 127
Eco57I CTGAAG 1 cut(s) 162
Eco72I CACGTG 1 cut(s) 259
EcoICRI GAGCTC 2 cut(s) 57, 127
EcoO109I RGGNCCY 1 cut(s) 163
EcoT38I GRGCYC 3 cut(s) 59, 129, 166
FaeI CATG 2 cut(s) 63, 125
FaiI YATR 5 cut(s) 61, 68, 75, 123, 310
FatI CATG 2 cut(s) 59, 121
Fnu4HI GCNGC 1 cut(s) 36
FriOI GRGCYC 3 cut(s) 59, 129, 166
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 101, 108
GlaI GCGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 36
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 3 cut(s) 147, 164, 299
HapII CCGG 2 cut(s) 113, 191
HgaI GACGC 2 cut(s) 94, 299
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 63, 125
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HpaII CCGG 2 cut(s) 113, 191
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 230
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 137, 213
HpyCH4IV ACGT 2 cut(s) 169, 258
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 170, 200
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 2 cut(s) 169, 258
Hsp92II CATG 2 cut(s) 63, 125
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 117, 230
LpnPI CCDG 4 cut(s) 126, 153, 204, 213
LweI GCATC 2 cut(s) 87, 270
MaeI CTAG 2 cut(s) 101, 108
MaeII ACGT 2 cut(s) 169, 258
MaeIII GTNAC 1 cut(s) 267
MalI GATC 2 cut(s) 119, 232
MboI GATC 2 cut(s) 117, 230
MboII GAAGA 1 cut(s) 40
MhlI GDGCHC 4 cut(s) 59, 129, 166, 175
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 2 cut(s) 185, 209
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 113, 191
MspR9I CCNGG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 113, 170, 200
NciI CCSGG 1 cut(s) 191
NdeII GATC 2 cut(s) 117, 230
NlaIII CATG 2 cut(s) 63, 125
NlaIV GGNNCC 2 cut(s) 164, 198
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PkrI GCNGC 1 cut(s) 37
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
Ppu21I YACGTR 2 cut(s) 170, 259
Psp124BI GAGCTC 2 cut(s) 59, 129
PspCI CACGTG 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 164, 198
PspOMI GGGCCC 1 cut(s) 162
PspPI GGNCC 2 cut(s) 162, 163
PsrI GAACNNNNNNTAC 2 cut(s) 150, 182
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SacI GAGCTC 2 cut(s) 59, 129
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 117, 230
Sau96I GGNCC 2 cut(s) 162, 163
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 4 cut(s) 59, 129, 166, 175
SetI ASST 6 cut(s) 59, 129, 172, 205, 224, 261
SfaNI GCATC 2 cut(s) 87, 270
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SsiI CCGC 3 cut(s) 35, 38, 194
SspMI CTAG 2 cut(s) 101, 108
SstI GAGCTC 2 cut(s) 59, 129
StyD4I CCNGG 1 cut(s) 189
TaiI ACGT 2 cut(s) 172, 261
TaqI TCGA 3 cut(s) 26, 129, 185
TauI GCSGC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
XspI CTAG 2 cut(s) 101, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.