RLG00000011985

glutaredoxin-C11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010825
Physical Location & Seq
Forward (+)
14345489 .. 14347781
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011985

Sequence Viewer

Length: 519 bp
ATGGAGAGTGTTAGAGAATTGGCTTCAGAGAAGGCAGCAGTGATCTTCACCAAGAGCTCATGCTGCATATGCCACAGTGTCAAGTCGCTTTTCTACGAGCTCGGTGCAAGCCCTGCTATTCACGAGATTGATCGATACTCAAATGGGAGGGACATGGAATCAGCGTTAAGGCAGCTCGGGTGCAACCCTTCTTTCCCTGCTGTGTTCATAGGTGGGAAGTATGTAGGCTCTTCAAAGGATATCATATCTCTCCATGTTGATGGGTTGCCAGTAAAGGCAACTGCCCCCACTCCATTTCTCTTTGATGAATTACCTCAAAGAGGCATAGGTAATTATGAGCAACTAGTACTTGTACGTGTGGGAAGGAATCTTGGCAAGTTGGTCGTGGGCGCAACACCAGGAATCGATAGGCACCGAAAGCAGTCTATCTCATTCGCCATTTTTCTGCATAGGGATTCAAGGAAGGTGATTGAGAGAATCCGGTGTGAATTGACCAGCTTTGCAATTGCCTGCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

173

Amino Acids

18.92

Weight (kDa)

8.97

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 2.9e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47870 AT3G62950
fragaria_vesca FvH4_2g24941
malus_domestica MD03G1278000.v1.1 MD03G1278100.v1.1 MD11G1299900.v1.1 MD11G1300000.v1.1
prunus_persica Prupe.8G254300_v2.0.a1
pyrus_communis pycom03g22140 pycom03g22150
rosa_chinensis RchiOBHm_Chr6g0292871
rosa_laevigata RLG00000011985
rosa_multiflora Rmu_sc0000639.1_g000018
rosa_roxburghii Rroxscaffold_7G00174640
rosa_rugosa Rorug06G0230400
rosa_samantha Rh6AG343700 Rh6BG350900 Rh6CG357900 Rh6DG343800
rosa_wichuraiana Rw6G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 9
AfaI GTAC 2 cut(s) 348, 354
AfiI CCNNNNNNNGG 1 cut(s) 320
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 2 cut(s) 234, 459
AhlI ACTAGT 1 cut(s) 343
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 4 cut(s) 57, 100, 175, 498
AluI AGCT 4 cut(s) 57, 100, 175, 498
Alw21I GWGCWC 2 cut(s) 59, 102
Ama87I CYCGRG 1 cut(s) 176
ApeKI GCWGC 3 cut(s) 35, 63, 172
AspLEI GCGC 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 40, 478
AvaI CYCGRG 1 cut(s) 176
BanI GGYRCC 1 cut(s) 411
BanII GRGCYC 2 cut(s) 59, 102
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 59, 102
BbvI GCAGC 3 cut(s) 47, 50, 184
BccI CCATC 1 cut(s) 254
BcgI CGANNNNNNTGC 4 cut(s) 86, 120, 364, 398
BciT130I CCWGG 1 cut(s) 399
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 1 cut(s) 344
BisI GCNGC 3 cut(s) 36, 64, 173
BlsI GCNGC 3 cut(s) 37, 65, 174
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 399
BmeT110I CYCGRG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 399
Bsa29I ATCGAT 2 cut(s) 133, 405
BsaAI YACGTR 1 cut(s) 356
BsaWI WCCGGW 1 cut(s) 480
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 399
BseCI ATCGAT 2 cut(s) 133, 405
BseLI CCNNNNNNNGG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 269
BseXI GCAGC 3 cut(s) 47, 50, 184
BshNI GGYRCC 1 cut(s) 411
BshVI ATCGAT 2 cut(s) 133, 405
BsiHKAI GWGCWC 2 cut(s) 59, 102
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 481
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 59, 102
Bsp143I GATC 2 cut(s) 42, 130
BspDI ATCGAT 2 cut(s) 133, 405
BspLI GGNNCC 1 cut(s) 413
BspQI GCTCTTC 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 411
BsrI ACTGG 1 cut(s) 269
BssMI GATC 2 cut(s) 42, 130
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 109, 511
BstENI CCTNNNNNAGG 1 cut(s) 318
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 2 cut(s) 45, 133
BstMBI GATC 2 cut(s) 42, 130
BstMWI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 418
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 47, 50, 184
BstXI CCANNNNNNTGG 1 cut(s) 260
Bsu15I ATCGAT 2 cut(s) 133, 405
BsuTUI ATCGAT 2 cut(s) 133, 405
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 82
Cac8I GCNNGC 2 cut(s) 109, 511
CfoI GCGC 1 cut(s) 392
ClaI ATCGAT 2 cut(s) 133, 405
Csp6I GTAC 2 cut(s) 347, 353
CviAII CATG 3 cut(s) 60, 154, 254
CviJI RGCY 7 cut(s) 23, 57, 100, 111, 175, 228, 498
CviKI_1 RGCY 7 cut(s) 23, 57, 100, 111, 175, 228, 498
CviQI GTAC 2 cut(s) 347, 353
DpnI GATC 2 cut(s) 44, 132
DpnII GATC 2 cut(s) 42, 130
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Ecl136II GAGCTC 2 cut(s) 57, 100
Eco24I GRGCYC 2 cut(s) 59, 102
Eco32I GATATC 1 cut(s) 241
Eco53kI GAGCTC 2 cut(s) 57, 100
Eco57I CTGAAG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 2 cut(s) 57, 100
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 397
EcoRV GATATC 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 59, 102
FaeI CATG 3 cut(s) 63, 157, 257
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 59, 153, 253
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 36, 64, 173
FriOI GRGCYC 2 cut(s) 59, 102
Fsp4HI GCNGC 3 cut(s) 36, 64, 173
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 391
GluI GCNGC 3 cut(s) 36, 64, 173
HapII CCGG 1 cut(s) 481
HhaI GCGC 1 cut(s) 392
Hin1II CATG 3 cut(s) 63, 157, 257
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HinfI GANTC 5 cut(s) 158, 367, 402, 455, 477
HpaII CCGG 1 cut(s) 481
HphI GGTGA 2 cut(s) 40, 478
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 4 cut(s) 25, 198, 357, 457
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 5 cut(s) 66, 107, 183, 448, 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 418
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 3 cut(s) 63, 157, 257
HspAI GCGC 1 cut(s) 390
Kzo9I GATC 2 cut(s) 42, 130
LguI GCTCTTC 1 cut(s) 235
LpnPI CCDG 7 cut(s) 126, 210, 282, 384, 411, 494, 508
Lsp1109I GCAGC 3 cut(s) 47, 50, 184
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 355
MalI GATC 2 cut(s) 44, 132
MboI GATC 2 cut(s) 42, 130
MboII GAAGA 2 cut(s) 37, 222
MfeI CAATTG 1 cut(s) 504
MhlI GDGCHC 2 cut(s) 59, 102
MluCI AATT 5 cut(s) 17, 308, 331, 488, 504
MnlI CCTC 3 cut(s) 141, 314, 324
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 481
MspR9I CCNGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 4 cut(s) 63, 69, 113, 418
NdeI CATATG 1 cut(s) 68
NdeII GATC 2 cut(s) 42, 130
NlaIII CATG 3 cut(s) 63, 157, 257
NlaIV GGNNCC 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 235
PfeI GAWTC 5 cut(s) 158, 367, 402, 455, 477
PkrI GCNGC 3 cut(s) 37, 65, 174
Ppu21I YACGTR 1 cut(s) 356
Psp124BI GAGCTC 2 cut(s) 59, 102
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 413
RsaI GTAC 2 cut(s) 348, 354
RsaNI GTAC 2 cut(s) 347, 353
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 2 cut(s) 59, 102
SapI GCTCTTC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 3 cut(s) 36, 64, 173
Sau3AI GATC 2 cut(s) 42, 130
ScaI AGTACT 1 cut(s) 348
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 2 cut(s) 59, 102
SetI ASST 9 cut(s) 59, 102, 177, 214, 316, 331, 358, 468, 500
SmiMI CAYNNNNRTG 1 cut(s) 258
SpeI ACTAGT 1 cut(s) 343
Sse9I AATT 5 cut(s) 17, 308, 331, 488, 504
SspMI CTAG 1 cut(s) 344
SstI GAGCTC 2 cut(s) 59, 102
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 358
TaqI TCGA 2 cut(s) 133, 405
TasI AATT 5 cut(s) 17, 308, 331, 488, 504
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 5 cut(s) 158, 367, 402, 455, 477
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 2 cut(s) 45, 82
TseI GCWGC 3 cut(s) 35, 63, 172
TspDTI ATGAA 2 cut(s) 196, 321
TspRI CASTG 2 cut(s) 45, 82
XagI CCTNNNNNAGG 1 cut(s) 318
XspI CTAG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.