Rroxscaffold_7G00174640

glutaredoxin-C11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010825
Physical Location & Seq
Forward (+)
14301237 .. 14306611
5375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174640.1

Sequence Viewer

Length: 312 bp
ATGGAGAGTGTTAGAGAATTGGCTTCAGAGAAGGCAGCAGTGATCTTCACCAAGAGCACATGCTGCATATGCCACAGTGTCAAGTCGCTTTTCTACGAGCTCGGTGCAAGCCCTGCTATTCACGAGATTGATCGATACTCAAATGGGAGGGACATGGAGTCAGCGTTAAGGCAGCTCGGGTGCAACCCTTCTTTCCCTGCTGTGTTCATAGGTGGAACACTGATCGGATCAACCAATGAAGTCATGTCCCTCCACCTAAAAGGCCAACTGATCCCAAAACTGAAGTCTTATGAGCAAAACGCTACGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.22

Weight (kDa)

6.81

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 7.1e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010825)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47870 AT3G62950
fragaria_vesca FvH4_2g24941
malus_domestica MD03G1278000.v1.1 MD03G1278100.v1.1 MD11G1299900.v1.1 MD11G1300000.v1.1
prunus_persica Prupe.8G254300_v2.0.a1
pyrus_communis pycom03g22140 pycom03g22150
rosa_chinensis RchiOBHm_Chr6g0292871
rosa_laevigata RLG00000011985
rosa_multiflora Rmu_sc0000639.1_g000018
rosa_roxburghii Rroxscaffold_7G00174640
rosa_rugosa Rorug06G0230400
rosa_samantha Rh6AG343700 Rh6BG350900 Rh6CG357900 Rh6DG343800
rosa_wichuraiana Rw6G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 235, 265
AcuI CTGAAG 2 cut(s) 9, 302
AhdI GACNNNNNGTC 1 cut(s) 157
AluBI AGCT 2 cut(s) 100, 175
AluI AGCT 2 cut(s) 100, 175
Alw21I GWGCWC 2 cut(s) 59, 102
AlwI GGATC 2 cut(s) 235, 265
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 3 cut(s) 35, 63, 172
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 176
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 59, 102
BbvI GCAGC 3 cut(s) 47, 50, 184
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BisI GCNGC 3 cut(s) 36, 64, 173
BlsI GCNGC 3 cut(s) 37, 65, 174
BmeRI GACNNNNNGTC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
BseCI ATCGAT 1 cut(s) 133
BseXI GCAGC 3 cut(s) 47, 50, 184
BshFI GGCC 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 59, 102
BsiHKCI CYCGRG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 164, 232
BsmFI GGGAC 2 cut(s) 164, 232
BsnI GGCC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 59, 102
Bsp143I GATC 5 cut(s) 42, 130, 222, 227, 270
BspANI GGCC 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 133
BspPI GGATC 2 cut(s) 235, 265
BssMI GATC 5 cut(s) 42, 130, 222, 227, 270
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 77
BstAPI GCANNNNNTGC 2 cut(s) 63, 113
BstC8I GCNNGC 1 cut(s) 109
BstKTI GATC 5 cut(s) 45, 133, 225, 230, 273
BstMBI GATC 5 cut(s) 42, 130, 222, 227, 270
BstMWI GCNNNNNNNGC 3 cut(s) 63, 69, 113
BstNSI RCATGY 1 cut(s) 63
BstV1I GCAGC 3 cut(s) 47, 50, 184
Bsu15I ATCGAT 1 cut(s) 133
BsuRI GGCC 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 3 cut(s) 45, 82, 218
Cac8I GCNNGC 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 133
CviAII CATG 3 cut(s) 60, 154, 244
CviJI RGCY 5 cut(s) 23, 100, 111, 175, 264
CviKI_1 RGCY 5 cut(s) 23, 100, 111, 175, 264
DpnI GATC 5 cut(s) 44, 132, 224, 229, 272
DpnII GATC 5 cut(s) 42, 130, 222, 227, 270
DriI GACNNNNNGTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 2 cut(s) 9, 302
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 3 cut(s) 63, 157, 247
FaiI YATR 7 cut(s) 61, 68, 70, 155, 209, 245, 291
FaqI GGGAC 2 cut(s) 164, 232
FatI CATG 3 cut(s) 59, 153, 243
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 36, 64, 173
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 36, 64, 173
GluI GCNGC 3 cut(s) 36, 64, 173
HaeIII GGCC 1 cut(s) 264
Hin1II CATG 3 cut(s) 63, 157, 247
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 28, 227
Hpy188III TCNNGA 2 cut(s) 122, 309
HpyAV CCTTC 2 cut(s) 25, 198
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 66, 107, 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 69, 113
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 3 cut(s) 63, 157, 247
Kzo9I GATC 5 cut(s) 42, 130, 222, 227, 270
LpnPI CCDG 2 cut(s) 126, 210
Lsp1109I GCAGC 3 cut(s) 47, 50, 184
MaeII ACGT 1 cut(s) 305
MalI GATC 5 cut(s) 44, 132, 224, 229, 272
MboI GATC 5 cut(s) 42, 130, 222, 227, 270
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 59, 102
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 2 cut(s) 141, 260
MseI TTAA 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 63, 69, 113
NdeI CATATG 1 cut(s) 68
NdeII GATC 5 cut(s) 42, 130, 222, 227, 270
NlaIII CATG 3 cut(s) 63, 157, 247
NspI RCATGY 1 cut(s) 63
PkrI GCNGC 3 cut(s) 37, 65, 174
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 102
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 3 cut(s) 36, 64, 173
Sau3AI GATC 5 cut(s) 42, 130, 222, 227, 270
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 2 cut(s) 59, 102
SetI ASST 5 cut(s) 102, 177, 214, 258, 308
Sse9I AATT 1 cut(s) 17
SstI GAGCTC 1 cut(s) 102
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 133
TasI AATT 1 cut(s) 17
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 3 cut(s) 45, 82, 225
TseI GCWGC 3 cut(s) 35, 63, 172
TspDTI ATGAA 2 cut(s) 196, 252
TspRI CASTG 3 cut(s) 45, 82, 225
XceI RCATGY 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.