Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012411

Physical Location & Seq

Genomic Coordinates Forward (+)

19614564 .. 19615769

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCAACAAAGGCAGTTCTTCTCCCGTGGCTTATCCCATCGCCGAGACACGTATCGCTGTTCCCAGTGGTTCAATTGCCGGCGTTGGAGACCGCCGGGTGGTGTGTAAGAAAGAGGAGGGCAGAAGACGTAGCAGTCTCCGTCGCCTTCAATCCTTCTGGCAATTTCGACATCTCTGCCTTCGAGAATGACCAAGATTCAGATAAAGTGGAACCTCCGATGCCTCCAACGACCGGCCGGTACGAAGTAGTGATCGACAACGACTCAATTGGGCGGCTTGACCTATCCCCGTTTCAGAGAGCCATCGGCATAACCTCGCCTGATGATTTTGGTGTAGCTGAACCAAAACGGTATTTGGATCGAACCATCGGATTCACCATCAATTACAAGAGAGAAGACCCCGGGGATCCGCGGGAGCTGTCAGAGTACCCGGACGTAAGACTATGGTTCGTGAGGCTCGACGCGATGTACCCTTGGCTGCCTCTGCTGCTGGACTGGCGAGCTGGAGAACTTGCTCGATACGCAGCCATGTTAGTGCCGCACCAGATGAGCTTGAGAATGGGTGTCGTTTTCAATCCGGAGGCGTTGGAGCTTTTCGTAATGAACAAAGTGTTTGTGGTTTATCCGTGGCTGAAACGGCACGGCGTCCCAAAGCCCAGGTTGAAGACGAGCGACATGGCCAGGATGCTCGGATTCGGTATCGGCGATGAGCTCTTCGACTTGATCGATCACAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Crr6

Protein Analysis

246

Amino Acids

28.03

Weight (kDa)

5.34

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Crr6	PF08847	37 - 193	3.6e-58	Chlororespiratory reduction 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47910 AT2G47910
fragaria_vesca	FvH4_1g01870
malus_domestica	MD02G1016600.v1.1 MD15G1161100.v1.1
prunus_persica	Prupe.7G256300_v2.0.a1
pyrus_communis	pycom02g01470 pycom02g01490
rosa_chinensis	RchiOBHm_Chr2g0086841
rosa_laevigata	RLG00000015809
rosa_multiflora	Rmu_sc0007954.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154090
rosa_rugosa	Rorug01G0470100.1 Rorug01G0470200
rosa_samantha	Rh2AG022700 Rh2BG023500 Rh2CG023700 Rh2DG023300
rosa_wichuraiana	Rw2G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccII	CGCG	2 cut(s)	412, 464
AccIII	TCCGGA	1 cut(s)	577
AciI	CCGC	5 cut(s)	93, 274, 410, 412, 539
AclWI	GGATC	3 cut(s)	366, 401, 414
AcoI	YGGCCR	2 cut(s)	235, 678
AcyI	GRCGYC	1 cut(s)	645
AfaI	GTAC	3 cut(s)	242, 428, 470
AfiI	CCNNNNNNNGG	2 cut(s)	99, 233
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	74, 151, 574, 664
AjnI	CCWGG	2 cut(s)	656, 680
AluBI	AGCT	6 cut(s)	338, 418, 503, 552, 592, 712
AluI	AGCT	6 cut(s)	338, 418, 503, 552, 592, 712
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	3 cut(s)	40, 83, 142
AlwI	GGATC	3 cut(s)	366, 401, 414
Ama87I	CYCGRG	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	577
AoxI	GGCC	2 cut(s)	235, 678
ApeKI	GCWGC	3 cut(s)	478, 487, 524
AsuC2I	CCSGG	4 cut(s)	97, 402, 403, 431
AsuHPI	GGTGA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	680
BamHI	GGATCC	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	714
BbsI	GAAGAC	3 cut(s)	132, 402, 671
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	3 cut(s)	465, 474, 536
BccI	CCATC	4 cut(s)	46, 311, 374, 386
BceAI	ACGGC	2 cut(s)	653, 658
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	2 cut(s)	658, 682
BcnI	CCSGG	4 cut(s)	97, 402, 403, 431
BcoDI	GTCTC	3 cut(s)	40, 83, 142
BisI	GCNGC	5 cut(s)	275, 479, 488, 525, 539
BlsI	GCNGC	5 cut(s)	276, 480, 489, 526, 540
Bme1390I	CCNGG	6 cut(s)	97, 402, 403, 431, 658, 682
BmeT110I	CYCGRG	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	213, 408
BmrFI	CCNGG	6 cut(s)	97, 402, 403, 431, 658, 682
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	210, 675
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	3 cut(s)	132, 402, 671
BpmI	CTGGAG	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	574
BpuMI	CCSGG	4 cut(s)	97, 402, 403, 431
Bsa29I	ATCGAT	1 cut(s)	726
BsaAI	YACGTR	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	8 cut(s)	26, 400, 401, 402, 410, 473, 626, 656
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 233
Bse118I	RCCGGY	3 cut(s)	79, 233, 237
Bse1I	ACTGG	2 cut(s)	65, 500
BseAI	TCCGGA	1 cut(s)	577
BseBI	CCWGG	2 cut(s)	658, 682
BseCI	ATCGAT	1 cut(s)	726
BseDI	CCNNGG	8 cut(s)	26, 400, 401, 402, 410, 473, 626, 656
BseGI	GGATG	1 cut(s)	690
BseLI	CCNNNNNNNGG	2 cut(s)	99, 233
BseNI	ACTGG	2 cut(s)	65, 500
BseRI	GAGGAG	1 cut(s)	130
BseX3I	CGGCCG	1 cut(s)	235
BseXI	GCAGC	3 cut(s)	465, 474, 536
Bsh1236I	CGCG	2 cut(s)	412, 464
Bsh1285I	CGRYCG	2 cut(s)	234, 238
BshFI	GGCC	2 cut(s)	237, 680
BshVI	ATCGAT	1 cut(s)	726
BsiEI	CGRYCG	2 cut(s)	234, 238
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	7 cut(s)	80, 96, 234, 238, 402, 431, 578
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	2 cut(s)	99, 233
BsmAI	GTCTC	3 cut(s)	40, 83, 142
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	2 cut(s)	237, 680
Bso31I	GGTCTC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp13I	TCCGGA	1 cut(s)	577
Bsp143I	GATC	5 cut(s)	252, 358, 406, 723, 727
BspACI	CCGC	5 cut(s)	93, 274, 410, 412, 539
BspANI	GGCC	2 cut(s)	237, 680
BspDI	ATCGAT	1 cut(s)	726
BspEI	TCCGGA	1 cut(s)	577
BspFNI	CGCG	2 cut(s)	412, 464
BspLI	GGNNCC	2 cut(s)	213, 408
BspPI	GGATC	3 cut(s)	366, 401, 414
BspQI	GCTCTTC	1 cut(s)	719
BspTNI	GGTCTC	1 cut(s)	83
BsrFI	RCCGGY	3 cut(s)	79, 233, 237
BsrI	ACTGG	2 cut(s)	65, 500
BssAI	RCCGGY	3 cut(s)	79, 233, 237
BssECI	CCNNGG	8 cut(s)	26, 400, 401, 402, 410, 473, 626, 656
BssMI	GATC	5 cut(s)	252, 358, 406, 723, 727
BssNI	GRCGYC	1 cut(s)	645
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	2 cut(s)	658, 682
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	719
BstACI	GRCGYC	1 cut(s)	645
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	81, 501
BstDSI	CCRYGG	3 cut(s)	26, 410, 626
BstF5I	GGATG	1 cut(s)	690
BstFNI	CGCG	2 cut(s)	412, 464
BstKTI	GATC	5 cut(s)	255, 361, 409, 726, 730
BstMAI	GTCTC	3 cut(s)	40, 83, 142
BstMBI	GATC	5 cut(s)	252, 358, 406, 723, 727
BstMCI	CGRYCG	2 cut(s)	234, 238
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 484, 487, 496, 521, 637
BstNI	CCWGG	2 cut(s)	658, 682
BstSCI	CCNGG	6 cut(s)	95, 400, 401, 429, 656, 680
BstUI	CGCG	2 cut(s)	412, 464
BstV1I	GCAGC	3 cut(s)	465, 474, 536
BstV2I	GAAGAC	3 cut(s)	132, 402, 671
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BstZI	CGGCCG	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	726
BsuRI	GGCC	2 cut(s)	237, 680
BsuTUI	ATCGAT	1 cut(s)	726
BtgI	CCRYGG	3 cut(s)	26, 410, 626
BtgZI	GCGATG	3 cut(s)	24, 479, 720
BtsCI	GGATG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	81, 501
Cfr10I	RCCGGY	3 cut(s)	79, 233, 237
Cfr42I	CCGCGG	1 cut(s)	413
Cfr9I	CCCGGG	1 cut(s)	401
ClaI	ATCGAT	1 cut(s)	726
CseI	GACGC	2 cut(s)	470, 634
Csp6I	GTAC	3 cut(s)	241, 427, 469
CviAII	CATG	2 cut(s)	529, 676
CviQI	GTAC	3 cut(s)	241, 427, 469
DpnI	GATC	5 cut(s)	254, 360, 408, 725, 729
DpnII	GATC	5 cut(s)	252, 358, 406, 723, 727
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	2 cut(s)	235, 678
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
Ecl136II	GAGCTC	1 cut(s)	712
EclXI	CGGCCG	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	83
Eco52I	CGGCCG	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	712
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	656, 680
EcoT14I	CCWWGG	1 cut(s)	473
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	2 cut(s)	532, 679
FaiI	YATR	4 cut(s)	311, 445, 530, 677
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	2 cut(s)	528, 675
FauI	CCCGC	1 cut(s)	405
Fnu4HI	GCNGC	5 cut(s)	275, 479, 488, 525, 539
FokI	GGATG	1 cut(s)	697
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	5 cut(s)	275, 479, 488, 525, 539
GluI	GCNGC	5 cut(s)	275, 479, 488, 525, 539
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	237, 680
HapII	CCGG	7 cut(s)	80, 96, 234, 238, 402, 431, 578
HgaI	GACGC	2 cut(s)	470, 634
Hin1I	GRCGYC	1 cut(s)	645
Hin1II	CATG	2 cut(s)	532, 679
HinfI	GANTC	4 cut(s)	197, 263, 372, 693
HpaII	CCGG	7 cut(s)	80, 96, 234, 238, 402, 431, 578
HphI	GGTGA	1 cut(s)	367
Hpy188I	TCNGA	6 cut(s)	202, 219, 297, 371, 424, 692
Hpy188III	TCNNGA	3 cut(s)	184, 451, 578
Hpy99I	CGWCG	2 cut(s)	146, 464
HpyAV	CCTTC	3 cut(s)	157, 165, 190
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4IV	ACGT	3 cut(s)	51, 129, 435
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 484, 487, 496, 521, 637
HpySE526I	ACGT	3 cut(s)	51, 129, 435
Hsp92I	GRCGYC	1 cut(s)	645
Hsp92II	CATG	2 cut(s)	532, 679
Kpn2I	TCCGGA	1 cut(s)	577
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
KspI	CCGCGG	1 cut(s)	413
Kzo9I	GATC	5 cut(s)	252, 358, 406, 723, 727
LguI	GCTCTTC	1 cut(s)	719
LmnI	GCTCC	2 cut(s)	415, 589
Lsp1109I	GCAGC	3 cut(s)	465, 474, 536
LweI	GCATC	2 cut(s)	210, 675
MaeII	ACGT	3 cut(s)	51, 129, 435
MalI	GATC	5 cut(s)	254, 360, 408, 725, 729
MboI	GATC	5 cut(s)	252, 358, 406, 723, 727
MboII	GAAGA	5 cut(s)	11, 137, 407, 676, 706
MfeI	CAATTG	2 cut(s)	74, 267
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	714
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	4 cut(s)	74, 163, 267, 382
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	3 cut(s)	66, 251, 567
MnlI	CCTC	8 cut(s)	108, 111, 225, 234, 325, 447, 492, 574
Mox20I	TGGCCA	1 cut(s)	680
MroI	TCCGGA	1 cut(s)	577
MroNI	GCCGGC	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	680
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	7 cut(s)	80, 96, 234, 238, 402, 431, 578
MspR9I	CCNGG	6 cut(s)	97, 402, 403, 431, 658, 682
MunI	CAATTG	2 cut(s)	74, 267
MvaI	CCWGG	2 cut(s)	658, 682
MvnI	CGCG	2 cut(s)	412, 464
MwoI	GCNNNNNNNGC	6 cut(s)	11, 484, 487, 496, 521, 637
NaeI	GCCGGC	1 cut(s)	81
NciI	CCSGG	4 cut(s)	97, 402, 403, 431
NdeII	GATC	5 cut(s)	252, 358, 406, 723, 727
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	532, 679
NlaIV	GGNNCC	2 cut(s)	213, 408
NmeAIII	GCCGAG	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	3 cut(s)	456, 702, 723
PdiI	GCCGGC	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	197, 372, 693
PkrI	GCNGC	5 cut(s)	276, 480, 489, 526, 540
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	714
Psp6I	CCWGG	2 cut(s)	656, 680
PspGI	CCWGG	2 cut(s)	656, 680
PspN4I	GGNNCC	2 cut(s)	213, 408
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	3 cut(s)	242, 428, 470
RsaNI	GTAC	3 cut(s)	241, 427, 469
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	714
SacII	CCGCGG	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	719
SatI	GCNGC	5 cut(s)	275, 479, 488, 525, 539
Sau3AI	GATC	5 cut(s)	252, 358, 406, 723, 727
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	6 cut(s)	97, 402, 403, 431, 658, 682
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	2 cut(s)	210, 675
Sfr303I	CCGCGG	1 cut(s)	413
SgrBI	CCGCGG	1 cut(s)	413
SmaI	CCCGGG	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
Sse9I	AATT	4 cut(s)	74, 163, 267, 382
SsiI	CCGC	5 cut(s)	93, 274, 410, 412, 539
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	6 cut(s)	95, 400, 401, 429, 656, 680
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	351
TaiI	ACGT	3 cut(s)	54, 132, 438
TaqI	TCGA	8 cut(s)	168, 183, 255, 361, 459, 517, 717, 726
TasI	AATT	4 cut(s)	74, 163, 267, 382
TauI	GCSGC	2 cut(s)	277, 541
TfiI	GAWTC	3 cut(s)	197, 372, 693
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	3 cut(s)	478, 487, 524
TspDTI	ATGAA	1 cut(s)	617
TspGWI	ACGGA	2 cut(s)	130, 615
TspMI	CCCGGG	1 cut(s)	401
TspRI	CASTG	1 cut(s)	72
XmaI	CCCGGG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.