Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012411

Physical Location & Seq

Genomic Coordinates Reverse (-)

21468285 .. 21470009

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G256300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTGCAATCTTCCAAACCCTGCTTCCCATTTGTTCTTCCAGACAGGCCATATCCTCTCCTGCTCCATGGACTCCCCTTAGACCACCCATCTCAGATTCCATGGCCTCTTTGGCCATTTCAAACTTAAATAGGCGGCAAGGACAAGTGGCAGTCTCAGTTGCCTTCAACCCATCTGGGAATTTTGACATCTCTTTGTATGACGAGGAAGAAGACACTAGTAAAGTTGAACCTCCAATGCCACCAAGTGAAGGTCGATTTGAAATAGTTCTTGATAATGATGTGATTCGGGGTCTTGACTTATCCCCATTTCATTCTGCAACTGGGATTACCAATCCTTCATCAGCCAAGCCAAAAGAGTTTCTTGAACGTACAATTGGCTTTACCATTAACTATACAAGAGAAGATCCACGTGATCTTAGAGAACTATCAGAATTCCCTGATATAAGACTCTGGTTTTTGAGACTTGATGCCTCCTATCCCTGGTTGCCTGTCCTCTTGGATTGGCGAGCCGGAGAACTGGCTCGTTATGCTGCCATGTTGGTTCCACACCAGATGAACATGAGGATGGGGGTGGTCTTCAATCCTGAGGCACTGGAACTATTCGTTATGCAGAAGGTTTTTATTGTGTACTCATGGTTGAAGCAACATGACATTCCAAAGCCTAGATTGAAGACCAGTGACATGGCCAGGATGCTTGGGTTTGGAATTGGAGATGAGCTCTATGACTTGATCGATAAACATCCACTGAAAAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Crr6

Protein Analysis

254

Amino Acids

28.75

Weight (kDa)

5.46

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47910 AT2G47910
fragaria_vesca	FvH4_1g01870
malus_domestica	MD02G1016600.v1.1 MD15G1161100.v1.1
prunus_persica	Prupe.7G256300_v2.0.a1
pyrus_communis	pycom02g01470 pycom02g01490
rosa_chinensis	RchiOBHm_Chr2g0086841
rosa_laevigata	RLG00000015809
rosa_multiflora	Rmu_sc0007954.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154090
rosa_rugosa	Rorug01G0470100.1 Rorug01G0470200
rosa_samantha	Rh2AG022700 Rh2BG023500 Rh2CG023700 Rh2DG023300
rosa_wichuraiana	Rw2G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	2 cut(s)	114, 687
AcsI	RAATTY	2 cut(s)	181, 434
AcvI	CACGTG	1 cut(s)	413
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	2 cut(s)	373, 632
AfiI	CCNNNNNNNGG	2 cut(s)	251, 483
AgsI	TTSAA	8 cut(s)	123, 169, 230, 263, 368, 583, 643, 673
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	2 cut(s)	482, 689
AjuI	GAANNNNNNNTTGG	4 cut(s)	9, 41, 360, 392
AluBI	AGCT	1 cut(s)	721
AluI	AGCT	1 cut(s)	721
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	2 cut(s)	160, 457
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	4 cut(s)	48, 105, 114, 687
ApeKI	GCWGC	2 cut(s)	5, 533
ApoI	RAATTY	2 cut(s)	181, 434
Asp700I	GAANNNNTTC	1 cut(s)	267
AxyI	CCTNAGG	1 cut(s)	588
BalI	TGGCCA	2 cut(s)	116, 689
BanII	GRGCYC	1 cut(s)	723
BbrPI	CACGTG	1 cut(s)	413
BbsI	GAAGAC	3 cut(s)	219, 571, 680
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	3 cut(s)	98, 181, 562
BciT130I	CCWGG	2 cut(s)	484, 691
BcoDI	GTCTC	2 cut(s)	160, 457
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	2 cut(s)	219, 666
BglI	GCCNNNNNGGC	1 cut(s)	113
BisI	GCNGC	3 cut(s)	6, 137, 534
BlsI	GCNGC	3 cut(s)	7, 138, 535
Bme1390I	CCNGG	2 cut(s)	484, 691
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	484, 691
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	460, 684
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	3 cut(s)	219, 571, 680
BplI	GAGNNNNNCTC	2 cut(s)	705, 737
Bsa29I	ATCGAT	1 cut(s)	735
BsaAI	YACGTR	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	741
BsaJI	CCNNGG	3 cut(s)	68, 102, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 483
Bse1I	ACTGG	4 cut(s)	328, 525, 600, 678
Bse21I	CCTNAGG	1 cut(s)	588
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	484, 691
BseCI	ATCGAT	1 cut(s)	735
BseDI	CCNNGG	3 cut(s)	68, 102, 482
BseGI	GGATG	3 cut(s)	573, 699, 742
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	2 cut(s)	251, 483
BseMII	CTCAG	3 cut(s)	108, 171, 579
BseNI	ACTGG	4 cut(s)	328, 525, 600, 678
BseXI	GCAGC	1 cut(s)	520
BshFI	GGCC	4 cut(s)	50, 107, 116, 689
BshVI	ATCGAT	1 cut(s)	735
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	1 cut(s)	513
BslI	CCNNNNNNNGG	2 cut(s)	251, 483
BsmAI	GTCTC	2 cut(s)	160, 457
BsnI	GGCC	4 cut(s)	50, 107, 116, 689
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	4 cut(s)	406, 415, 732, 755
Bsp19I	CCATGG	2 cut(s)	68, 102
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	4 cut(s)	50, 107, 116, 689
BspCNI	CTCAG	3 cut(s)	107, 170, 580
BspDI	ATCGAT	1 cut(s)	735
BspLI	GGNNCC	1 cut(s)	546
BspPI	GGATC	1 cut(s)	401
BsrI	ACTGG	4 cut(s)	328, 525, 600, 678
BssECI	CCNNGG	3 cut(s)	68, 102, 482
BssMI	GATC	4 cut(s)	406, 415, 732, 755
BssT1I	CCWWGG	2 cut(s)	68, 102
Bst2UI	CCWGG	2 cut(s)	484, 691
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	5 cut(s)	80, 94, 157, 419, 588
BstDSI	CCRYGG	2 cut(s)	68, 102
BstF5I	GGATG	3 cut(s)	573, 699, 742
BstKTI	GATC	4 cut(s)	409, 418, 735, 758
BstMAI	GTCTC	2 cut(s)	160, 457
BstMBI	GATC	4 cut(s)	406, 415, 732, 755
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 530
BstNI	CCWGG	2 cut(s)	484, 691
BstSCI	CCNGG	2 cut(s)	482, 689
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	3 cut(s)	219, 571, 680
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	735
Bsu36I	CCTNAGG	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	50, 107, 116, 689
BsuTUI	ATCGAT	1 cut(s)	735
BtgI	CCRYGG	2 cut(s)	68, 102
BtsCI	GGATG	3 cut(s)	573, 699, 742
BtsIMutI	CAGTG	3 cut(s)	593, 685, 746
Cac8I	GCNNGC	1 cut(s)	510
ClaI	ATCGAT	1 cut(s)	735
Csp6I	GTAC	2 cut(s)	372, 631
CviAII	CATG	7 cut(s)	69, 103, 538, 562, 636, 650, 685
CviQI	GTAC	2 cut(s)	372, 631
DdeI	CTNAG	5 cut(s)	80, 94, 157, 419, 588
DpnI	GATC	4 cut(s)	408, 417, 734, 757
DpnII	GATC	4 cut(s)	406, 415, 732, 755
DraIII	CACNNNGTG	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	114, 687
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	2 cut(s)	68, 102
Eco24I	GRGCYC	1 cut(s)	723
Eco53kI	GAGCTC	1 cut(s)	721
Eco72I	CACGTG	1 cut(s)	413
Eco81I	CCTNAGG	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	721
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	482, 689
EcoT14I	CCWWGG	2 cut(s)	68, 102
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	2 cut(s)	68, 102
FaeI	CATG	7 cut(s)	72, 106, 541, 565, 639, 653, 688
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	7 cut(s)	68, 102, 537, 561, 635, 649, 684
Fnu4HI	GCNGC	3 cut(s)	6, 137, 534
FokI	GGATG	3 cut(s)	580, 706, 729
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	3 cut(s)	6, 137, 534
FspBI	CTAG	2 cut(s)	219, 666
GluI	GCNGC	3 cut(s)	6, 137, 534
HaeIII	GGCC	4 cut(s)	50, 107, 116, 689
HapII	CCGG	1 cut(s)	513
Hin1II	CATG	7 cut(s)	72, 106, 541, 565, 639, 653, 688
HinfI	GANTC	4 cut(s)	73, 98, 286, 450
HpaII	CCGG	1 cut(s)	513
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	2 cut(s)	97, 433
Hpy188III	TCNNGA	5 cut(s)	42, 272, 296, 365, 587
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	4 cut(s)	175, 245, 348, 610
HpyCH4IV	ACGT	2 cut(s)	370, 412
HpyCH4V	TGCA	3 cut(s)	8, 320, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 530
HpyF3I	CTNAG	5 cut(s)	80, 94, 157, 419, 588
HpySE526I	ACGT	2 cut(s)	370, 412
Hsp92II	CATG	7 cut(s)	72, 106, 541, 565, 639, 653, 688
Kzo9I	GATC	4 cut(s)	406, 415, 732, 755
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	2 cut(s)	460, 684
MaeI	CTAG	2 cut(s)	219, 666
MaeII	ACGT	2 cut(s)	370, 412
MaeIII	GTNAC	1 cut(s)	680
MalI	GATC	4 cut(s)	408, 417, 734, 757
MboI	GATC	4 cut(s)	406, 415, 732, 755
MboII	GAAGA	7 cut(s)	4, 30, 221, 224, 416, 571, 685
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	723
MlsI	TGGCCA	2 cut(s)	116, 689
MluCI	AATT	4 cut(s)	181, 375, 434, 708
MluNI	TGGCCA	2 cut(s)	116, 689
MlyI	GAGTC	2 cut(s)	67, 444
MnlI	CCTC	8 cut(s)	67, 118, 199, 243, 484, 506, 558, 583
Mox20I	TGGCCA	2 cut(s)	116, 689
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	2 cut(s)	116, 689
MseI	TTAA	2 cut(s)	128, 390
MslI	CAYNNNNRTG	1 cut(s)	566
Msp20I	TGGCCA	2 cut(s)	116, 689
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	484, 691
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	2 cut(s)	484, 691
MwoI	GCNNNNNNNGC	2 cut(s)	113, 530
NcoI	CCATGG	2 cut(s)	68, 102
NdeII	GATC	4 cut(s)	406, 415, 732, 755
NlaIII	CATG	7 cut(s)	72, 106, 541, 565, 639, 653, 688
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	680
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	98, 286
PkrI	GCNGC	3 cut(s)	7, 138, 535
PleI	GAGTC	2 cut(s)	67, 444
PmaCI	CACGTG	1 cut(s)	413
PmlI	CACGTG	1 cut(s)	413
PpsI	GAGTC	2 cut(s)	67, 444
Ppu21I	YACGTR	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	723
Psp6I	CCWGG	2 cut(s)	482, 689
PspCI	CACGTG	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	482, 689
PspN4I	GGNNCC	1 cut(s)	546
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	2 cut(s)	373, 632
RsaNI	GTAC	2 cut(s)	372, 631
RseI	CAYNNNNRTG	1 cut(s)	566
SacI	GAGCTC	1 cut(s)	723
SaqAI	TTAA	2 cut(s)	128, 390
SatI	GCNGC	3 cut(s)	6, 137, 534
Sau3AI	GATC	4 cut(s)	406, 415, 732, 755
SchI	GAGTC	2 cut(s)	67, 444
ScrFI	CCNGG	2 cut(s)	484, 691
SduI	GDGCHC	1 cut(s)	723
SetI	ASST	6 cut(s)	235, 256, 373, 415, 621, 723
SfaNI	GCATC	2 cut(s)	460, 684
SfiI	GGCCNNNNNGGCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	566
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	4 cut(s)	181, 375, 434, 708
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	2 cut(s)	219, 666
SstI	GAGCTC	1 cut(s)	723
StyD4I	CCNGG	2 cut(s)	482, 689
StyI	CCWWGG	2 cut(s)	68, 102
TaiI	ACGT	2 cut(s)	373, 415
TaqI	TCGA	2 cut(s)	256, 735
TasI	AATT	4 cut(s)	181, 375, 434, 708
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	98, 286
Tru1I	TTAA	2 cut(s)	128, 390
Tru9I	TTAA	2 cut(s)	128, 390
TscAI	CASTG	3 cut(s)	600, 685, 753
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	2 cut(s)	5, 533
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	3 cut(s)	302, 330, 572
TspRI	CASTG	3 cut(s)	600, 685, 753
XapI	RAATTY	2 cut(s)	181, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	2 cut(s)	219, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.