Chlororespiratory reduction 6
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47910 AT2G47910 |
| fragaria_vesca | FvH4_1g01870 |
| malus_domestica | MD02G1016600.v1.1 MD15G1161100.v1.1 |
| prunus_persica | Prupe.7G256300_v2.0.a1 |
| pyrus_communis | pycom02g01470 pycom02g01490 |
| rosa_chinensis | RchiOBHm_Chr2g0086841 |
| rosa_laevigata | RLG00000015809 |
| rosa_multiflora | Rmu_sc0007954.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00154090 |
| rosa_rugosa | Rorug01G0470100.1 Rorug01G0470200 |
| rosa_samantha | Rh2AG022700 Rh2BG023500 Rh2CG023700 Rh2DG023300 |
| rosa_wichuraiana | Rw2G001800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 114 |
| AcsI | RAATTY | 1 cut(s) | 181 |
| AgsI | TTSAA | 1 cut(s) | 169 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 9, 41, 82, 114 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AoxI | GGCC | 2 cut(s) | 105, 114 |
| ApeKI | GCWGC | 1 cut(s) | 136 |
| ApoI | RAATTY | 1 cut(s) | 181 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 138, 171 |
| BalI | TGGCCA | 1 cut(s) | 116 |
| BbvI | GCAGC | 1 cut(s) | 148 |
| BccI | CCATC | 1 cut(s) | 181 |
| BceAI | ACGGC | 1 cut(s) | 165 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 1 cut(s) | 177 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 113 |
| BisI | GCNGC | 1 cut(s) | 137 |
| BlsI | GCNGC | 1 cut(s) | 138 |
| BmiI | GGNNCC | 1 cut(s) | 78 |
| BmrI | ACTGGG | 1 cut(s) | 24 |
| BmuI | ACTGGG | 1 cut(s) | 24 |
| BsaJI | CCNNGG | 2 cut(s) | 71, 102 |
| Bse1I | ACTGG | 1 cut(s) | 30 |
| BseDI | CCNNGG | 2 cut(s) | 71, 102 |
| BseMII | CTCAG | 1 cut(s) | 108 |
| BseNI | ACTGG | 1 cut(s) | 30 |
| BseXI | GCAGC | 1 cut(s) | 148 |
| BshFI | GGCC | 2 cut(s) | 107, 116 |
| BslFI | GGGAC | 1 cut(s) | 156 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsmFI | GGGAC | 1 cut(s) | 156 |
| BsmI | GAATGC | 1 cut(s) | 8 |
| BsnI | GGCC | 2 cut(s) | 107, 116 |
| Bsp19I | CCATGG | 2 cut(s) | 71, 102 |
| BspANI | GGCC | 2 cut(s) | 107, 116 |
| BspCNI | CTCAG | 1 cut(s) | 107 |
| BspLI | GGNNCC | 1 cut(s) | 78 |
| BsrI | ACTGG | 1 cut(s) | 30 |
| BssECI | CCNNGG | 2 cut(s) | 71, 102 |
| BssT1I | CCWWGG | 2 cut(s) | 71, 102 |
| Bst4CI | ACNGT | 1 cut(s) | 126 |
| Bst6I | CTCTTC | 1 cut(s) | 199 |
| BstDEI | CTNAG | 1 cut(s) | 94 |
| BstDSI | CCRYGG | 2 cut(s) | 71, 102 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 113 |
| BstV1I | GCAGC | 1 cut(s) | 148 |
| BsuRI | GGCC | 2 cut(s) | 107, 116 |
| BtgI | CCRYGG | 2 cut(s) | 71, 102 |
| CviAII | CATG | 2 cut(s) | 72, 103 |
| CviJI | RGCY | 2 cut(s) | 107, 116 |
| CviKI_1 | RGCY | 2 cut(s) | 107, 116 |
| DdeI | CTNAG | 1 cut(s) | 94 |
| EaeI | YGGCCR | 1 cut(s) | 114 |
| Eam1104I | CTCTTC | 1 cut(s) | 199 |
| EarI | CTCTTC | 1 cut(s) | 199 |
| Eco130I | CCWWGG | 2 cut(s) | 71, 102 |
| EcoT14I | CCWWGG | 2 cut(s) | 71, 102 |
| ErhI | CCWWGG | 2 cut(s) | 71, 102 |
| FaeI | CATG | 2 cut(s) | 75, 106 |
| FaiI | YATR | 6 cut(s) | 53, 73, 104, 199, 201, 218 |
| FaqI | GGGAC | 1 cut(s) | 156 |
| FatI | CATG | 2 cut(s) | 71, 102 |
| FauNDI | CATATG | 1 cut(s) | 199 |
| Fnu4HI | GCNGC | 1 cut(s) | 137 |
| Fsp4HI | GCNGC | 1 cut(s) | 137 |
| FspBI | CTAG | 1 cut(s) | 177 |
| GluI | GCNGC | 1 cut(s) | 137 |
| HaeIII | GGCC | 2 cut(s) | 107, 116 |
| Hin1II | CATG | 2 cut(s) | 75, 106 |
| HinfI | GANTC | 2 cut(s) | 25, 98 |
| Hpy188I | TCNGA | 2 cut(s) | 24, 97 |
| Hpy188III | TCNNGA | 1 cut(s) | 42 |
| HpyAV | CCTTC | 2 cut(s) | 175, 206 |
| HpyCH4III | ACNGT | 1 cut(s) | 126 |
| HpyCH4V | TGCA | 1 cut(s) | 8 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 113 |
| HpyF3I | CTNAG | 1 cut(s) | 94 |
| Hsp92II | CATG | 2 cut(s) | 75, 106 |
| LpnPI | CCDG | 3 cut(s) | 43, 98, 125 |
| Lsp1109I | GCAGC | 1 cut(s) | 148 |
| MaeI | CTAG | 1 cut(s) | 177 |
| MboII | GAAGA | 5 cut(s) | 4, 30, 186, 218, 221 |
| MlsI | TGGCCA | 1 cut(s) | 116 |
| MluCI | AATT | 1 cut(s) | 181 |
| MluNI | TGGCCA | 1 cut(s) | 116 |
| MnlI | CCTC | 2 cut(s) | 92, 118 |
| Mox20I | TGGCCA | 1 cut(s) | 116 |
| MscI | TGGCCA | 1 cut(s) | 116 |
| MseI | TTAA | 2 cut(s) | 128, 229 |
| Msp20I | TGGCCA | 1 cut(s) | 116 |
| Mva1269I | GAATGC | 1 cut(s) | 8 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 113 |
| NcoI | CCATGG | 2 cut(s) | 71, 102 |
| NdeI | CATATG | 1 cut(s) | 199 |
| NlaIII | CATG | 2 cut(s) | 75, 106 |
| NlaIV | GGNNCC | 1 cut(s) | 78 |
| PctI | GAATGC | 1 cut(s) | 8 |
| PfeI | GAWTC | 2 cut(s) | 25, 98 |
| PkrI | GCNGC | 1 cut(s) | 138 |
| PspN4I | GGNNCC | 1 cut(s) | 78 |
| SaqAI | TTAA | 2 cut(s) | 128, 229 |
| SatI | GCNGC | 1 cut(s) | 137 |
| SetI | ASST | 2 cut(s) | 217, 224 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 113 |
| SgeI | CNNG | 7 cut(s) | 42, 54, 84, 115, 125, 152, 189 |
| Sse9I | AATT | 1 cut(s) | 181 |
| SspMI | CTAG | 1 cut(s) | 177 |
| StyI | CCWWGG | 2 cut(s) | 71, 102 |
| TaaI | ACNGT | 1 cut(s) | 126 |
| TaqI | TCGA | 1 cut(s) | 41 |
| TasI | AATT | 1 cut(s) | 181 |
| TfiI | GAWTC | 2 cut(s) | 25, 98 |
| Tru1I | TTAA | 2 cut(s) | 128, 229 |
| Tru9I | TTAA | 2 cut(s) | 128, 229 |
| TseI | GCWGC | 1 cut(s) | 136 |
| TspDTI | ATGAA | 2 cut(s) | 186, 219 |
| XapI | RAATTY | 1 cut(s) | 181 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 109 |
| XspI | CTAG | 1 cut(s) | 177 |