Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012411

Physical Location & Seq

Genomic Coordinates Reverse (-)

1247176 .. 1248557

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1016600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACTGCATTCTTCCAAACTCTGCTTCCCAGTTGTTCTTCGAGACCGACCATAATAGCCTCTCCTATTCCATGGGTTCCCCTCAAACCAATCTCAGATTCCATGGCCTCTTTGGCCATTTCACAGTTAAACAGGCAGCAGGGACAGACGGCAGTATCAGTTGCCTTCAACCCATCTAGGAATTTTGACATCTCTTCATATGATGAAGAAGAAGACACATCTAGCAAAGTTGAACCTCCAATGCCACCAAGTGAAGGCCGTTTCGAAATAGTTATTGACAATGATATAATTCGAGGTCTTGATTTATCTCCATTTCATACTGCAACTAGGATTACCACTCCTTCATCAGATGAACATGAGGATGGGAGTTGTCTTCAACGCCGAGGCACTCAAGCTGTTCGTCATGCAGACATTCCAAAACCTAGATTGAAGACTAGTGACATGGCTAGGATGCTAGGTTTTGGGATTGGAGACGAACTTTATGACATGATCAACAAGCATCCACTGAAAACATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Crr6

Protein Analysis

173

Amino Acids

19.02

Weight (kDa)

5.32

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47910 AT2G47910
fragaria_vesca	FvH4_1g01870
malus_domestica	MD02G1016600.v1.1 MD15G1161100.v1.1
prunus_persica	Prupe.7G256300_v2.0.a1
pyrus_communis	pycom02g01470 pycom02g01490
rosa_chinensis	RchiOBHm_Chr2g0086841
rosa_laevigata	RLG00000015809
rosa_multiflora	Rmu_sc0007954.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154090
rosa_rugosa	Rorug01G0470100.1 Rorug01G0470200
rosa_samantha	Rh2AG022700 Rh2BG023500 Rh2CG023700 Rh2DG023300
rosa_wichuraiana	Rw2G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	181
AdeI	CACNNNGTG	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	4 cut(s)	169, 233, 377, 430
AhlI	ACTAGT	1 cut(s)	434
AjuI	GAANNNNNNNTTGG	4 cut(s)	9, 41, 82, 114
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	37, 465
AoxI	GGCC	3 cut(s)	105, 114, 256
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	264
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BalI	TGGCCA	1 cut(s)	116
BbsI	GAAGAC	3 cut(s)	219, 365, 437
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	181, 356
BceAI	ACGGC	2 cut(s)	165, 243
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	37, 465
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	7 cut(s)	177, 222, 327, 423, 435, 447, 455
BglI	GCCNNNNNGGC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	78
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	441, 508
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	3 cut(s)	219, 365, 437
Bpu14I	TTCGAA	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	71, 102, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	71, 102, 382
BseGI	GGATG	3 cut(s)	367, 456, 499
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	3 cut(s)	107, 116, 258
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	2 cut(s)	37, 465
BsmBI	CGTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	3 cut(s)	107, 116, 258
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	489
Bsp19I	CCATGG	2 cut(s)	71, 102
BspANI	GGCC	3 cut(s)	107, 116, 258
BspCNI	CTCAG	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	78
BspT104I	TTCGAA	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	3 cut(s)	71, 102, 382
BssMI	GATC	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	71, 102
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	199
BstBI	TTCGAA	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	94
BstDSI	CCRYGG	2 cut(s)	71, 102
BstF5I	GGATG	3 cut(s)	367, 456, 499
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	2 cut(s)	37, 465
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	3 cut(s)	219, 365, 437
BsuRI	GGCC	3 cut(s)	107, 116, 258
BtgI	CCRYGG	2 cut(s)	71, 102
BtsCI	GGATG	3 cut(s)	367, 456, 499
BtsIMutI	CAGTG	1 cut(s)	503
CviAII	CATG	6 cut(s)	72, 103, 356, 404, 442, 487
CviJI	RGCY	6 cut(s)	59, 107, 116, 258, 395, 446
CviKI_1	RGCY	6 cut(s)	59, 107, 116, 258, 395, 446
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DraIII	CACNNNGTG	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	71, 102
Eco31I	GGTCTC	1 cut(s)	37
EcoT14I	CCWWGG	2 cut(s)	71, 102
ErhI	CCWWGG	2 cut(s)	71, 102
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	6 cut(s)	75, 106, 359, 407, 445, 490
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	6 cut(s)	71, 102, 355, 403, 441, 486
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	3 cut(s)	374, 463, 486
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	7 cut(s)	177, 222, 327, 423, 435, 447, 455
GluI	GCNGC	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	107, 116, 258
Hin1II	CATG	6 cut(s)	75, 106, 359, 407, 445, 490
HinfI	GANTC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	97, 349
Hpy188III	TCNNGA	2 cut(s)	42, 299
HpyAV	CCTTC	3 cut(s)	175, 248, 351
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	8, 323, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	94
Hsp92II	CATG	6 cut(s)	75, 106, 359, 407, 445, 490
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	1 cut(s)	489
LpnPI	CCDG	3 cut(s)	43, 118, 125
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	441, 508
MaeI	CTAG	7 cut(s)	177, 222, 327, 423, 435, 447, 455
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	8 cut(s)	4, 30, 186, 218, 221, 224, 365, 442
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	2 cut(s)	181, 288
MluNI	TGGCCA	1 cut(s)	116
MnlI	CCTC	7 cut(s)	70, 92, 118, 246, 287, 352, 377
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	113
NcoI	CCATGG	2 cut(s)	71, 102
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	6 cut(s)	75, 106, 359, 407, 445, 490
NlaIV	GGNNCC	1 cut(s)	78
NmeAIII	GCCGAG	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	437
NspV	TTCGAA	1 cut(s)	264
PctI	GAATGC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	489
SetI	ASST	5 cut(s)	238, 298, 397, 424, 460
SfaNI	GCATC	2 cut(s)	441, 508
SfiI	GGCCNNNNNGGCC	1 cut(s)	113
SfuI	TTCGAA	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	2 cut(s)	181, 288
SspMI	CTAG	7 cut(s)	177, 222, 327, 423, 435, 447, 455
StyI	CCWWGG	2 cut(s)	71, 102
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	41, 264, 292
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	181, 288
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	5 cut(s)	186, 219, 305, 333, 366
TspRI	CASTG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XspI	CTAG	7 cut(s)	177, 222, 327, 423, 435, 447, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.