Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012411

Physical Location & Seq

Genomic Coordinates Reverse (-)

975414 .. 976861

Gene Structure 1448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTGCAGTCTTCCAAACACTGCTTCCGATTTGTTCTTCTTCAAGCTCAAGGCAGAATCCATGGAACACTCCCTCCAGACCCATCTCAGACTCCATGGCCTCTTTGCCTATTTCACACTTGTATAGGCAGCAAGGCCAAGTAGCTGTCTCAGTTGCCTTCAACCCTTCTGGGAATTTTGACATATCTCTCTATGATGATGATGAAGACACATCTAAGGTTGAGCCTCCAATGCCACCAAGTGAAGGCAGATTCGAGATTGTTATTGACAATGACGTAATTCGTCGTCTCGACTTAACTCCATTTCATACTGCAACTGGCATTACCAATCCTTCATCAGCCAAGCCGAAAGAGTACCTTGAGCGTACAATTGGTTTTACCATTAACTACACAAGAGAAGATCCTCGAGATCCTCGAGAGCTATCCGAGTTTCCTGATATAAGACTATGGTTTGTGAGACTTGATGCTGCTTATCCTTGGTTGCCTGTGCTCTTGGACTGGCGAGCCGGAGAGCTAGCTCGTTATGCTGCCATGTTGGTGCCACATCAGATGAATATGAGGATGGGTGTTGTGTTCAATCCTGAGGCACTAGAATTGTTTGTTATGCAGAAAGTTTTTGTCATCTACTTGTGGCTGAAGCAACATAACATTCCCAAGCCTAGATTGAAGACTAGTGACATGGCTAGAATGCTTGGGTTTGGAATTGAGGATGAGCTTTATGATTTGATTGATAAACATCCGATTTCCACATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Crr6

Protein Analysis

252

Amino Acids

28.72

Weight (kDa)

5.28

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Crr6	PF08847	89 - 242	6.6e-60	Chlororespiratory reduction 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47910 AT2G47910
fragaria_vesca	FvH4_1g01870
malus_domestica	MD02G1016600.v1.1 MD15G1161100.v1.1
prunus_persica	Prupe.7G256300_v2.0.a1
pyrus_communis	pycom02g01470 pycom02g01490
rosa_chinensis	RchiOBHm_Chr2g0086841
rosa_laevigata	RLG00000015809
rosa_multiflora	Rmu_sc0007954.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154090
rosa_rugosa	Rorug01G0470100.1 Rorug01G0470200
rosa_samantha	Rh2AG022700 Rh2BG023500 Rh2CG023700 Rh2DG023300
rosa_wichuraiana	Rw2G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	538
AclWI	GGATC	2 cut(s)	395, 404
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	656
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	2 cut(s)	356, 367
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	45, 163, 577, 667
AhlI	ACTAGT	1 cut(s)	671
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AloI	GAACNNNNNNTCC	2 cut(s)	59, 91
AluBI	AGCT	6 cut(s)	48, 146, 421, 514, 518, 715
AluI	AGCT	6 cut(s)	48, 146, 421, 514, 518, 715
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	3 cut(s)	154, 293, 451
AlwI	GGATC	2 cut(s)	395, 404
Ama87I	CYCGRG	2 cut(s)	405, 414
AoxI	GGCC	2 cut(s)	99, 136
ApeKI	GCWGC	4 cut(s)	5, 130, 467, 527
ApoI	RAATTY	1 cut(s)	175
AsuNHI	GCTAGC	1 cut(s)	514
AvaI	CYCGRG	2 cut(s)	405, 414
AxyI	CCTNAGG	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	538
BbsI	GAAGAC	3 cut(s)	4, 213, 674
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	3 cut(s)	142, 454, 514
BccI	CCATC	2 cut(s)	92, 556
BcoDI	GTCTC	3 cut(s)	154, 293, 451
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	5 cut(s)	515, 590, 660, 672, 684
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	4 cut(s)	6, 131, 468, 528
BlsI	GCNGC	4 cut(s)	7, 132, 469, 529
BmeT110I	CYCGRG	2 cut(s)	405, 414
BmiI	GGNNCC	1 cut(s)	540
BmsI	GCATC	1 cut(s)	454
BmtI	GCTAGC	1 cut(s)	518
BpiI	GAAGAC	3 cut(s)	4, 213, 674
BpmI	CTGGAG	1 cut(s)	61
BpuEI	CTTGAG	2 cut(s)	34, 380
BsaBI	GATNNNNATC	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	62, 96, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	2 cut(s)	322, 503
Bse21I	CCTNAGG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	735
BseDI	CCNNGG	3 cut(s)	62, 96, 476
BseGI	GGATG	3 cut(s)	567, 715, 736
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	3 cut(s)	102, 165, 573
BseNI	ACTGG	2 cut(s)	322, 503
BseXI	GCAGC	3 cut(s)	142, 454, 514
BshFI	GGCC	2 cut(s)	101, 138
BshNI	GGYRCC	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	2 cut(s)	405, 414
BsiSI	CCGG	1 cut(s)	507
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	3 cut(s)	154, 293, 451
BsmBI	CGTCTC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	2 cut(s)	101, 138
BsoBI	CYCGRG	2 cut(s)	405, 414
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	400, 409
Bsp19I	CCATGG	2 cut(s)	62, 96
BspANI	GGCC	2 cut(s)	101, 138
BspCNI	CTCAG	3 cut(s)	101, 164, 574
BspLI	GGNNCC	1 cut(s)	540
BspMAI	CTGCAG	1 cut(s)	10
BspOI	GCTAGC	1 cut(s)	518
BspPI	GGATC	2 cut(s)	395, 404
BspT107I	GGYRCC	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	322, 503
BssECI	CCNNGG	3 cut(s)	62, 96, 476
BssMI	GATC	2 cut(s)	400, 409
BssT1I	CCWWGG	3 cut(s)	62, 96, 476
BstC8I	GCNNGC	2 cut(s)	504, 516
BstDEI	CTNAG	4 cut(s)	88, 151, 216, 582
BstDSI	CCRYGG	2 cut(s)	62, 96
BstF5I	GGATG	3 cut(s)	567, 715, 736
BstKTI	GATC	2 cut(s)	403, 412
BstMAI	GTCTC	3 cut(s)	154, 293, 451
BstMBI	GATC	2 cut(s)	400, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 524
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	3 cut(s)	142, 454, 514
BstV2I	GAAGAC	3 cut(s)	4, 213, 674
BstX2I	RGATCY	2 cut(s)	400, 409
BstYI	RGATCY	2 cut(s)	400, 409
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	101, 138
BtgI	CCRYGG	2 cut(s)	62, 96
BtsCI	GGATG	3 cut(s)	567, 715, 736
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	504, 516
Csp6I	GTAC	2 cut(s)	355, 366
CviAII	CATG	4 cut(s)	63, 97, 532, 679
CviQI	GTAC	2 cut(s)	355, 366
DdeI	CTNAG	4 cut(s)	88, 151, 216, 582
DpnI	GATC	2 cut(s)	402, 411
DpnII	GATC	2 cut(s)	400, 409
DraIII	CACNNNGTG	1 cut(s)	242
Eco130I	CCWWGG	3 cut(s)	62, 96, 476
Eco57I	CTGAAG	1 cut(s)	656
Eco81I	CCTNAGG	1 cut(s)	582
Eco88I	CYCGRG	2 cut(s)	405, 414
EcoT14I	CCWWGG	3 cut(s)	62, 96, 476
ErhI	CCWWGG	3 cut(s)	62, 96, 476
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	4 cut(s)	66, 100, 535, 682
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	4 cut(s)	62, 96, 531, 678
Fnu4HI	GCNGC	4 cut(s)	6, 131, 468, 528
FokI	GGATG	3 cut(s)	574, 722, 723
Fsp4HI	GCNGC	4 cut(s)	6, 131, 468, 528
FspBI	CTAG	5 cut(s)	515, 590, 660, 672, 684
GluI	GCNGC	4 cut(s)	6, 131, 468, 528
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	101, 138
HapII	CCGG	1 cut(s)	507
Hin1II	CATG	4 cut(s)	66, 100, 535, 682
HinfI	GANTC	3 cut(s)	58, 92, 252
HpaII	CCGG	1 cut(s)	507
Hpy188I	TCNGA	5 cut(s)	30, 91, 427, 549, 741
Hpy188III	TCNNGA	7 cut(s)	78, 256, 290, 407, 416, 434, 581
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	4 cut(s)	169, 177, 239, 342
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	8, 314, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 524
HpyF3I	CTNAG	4 cut(s)	88, 151, 216, 582
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	66, 100, 535, 682
Kzo9I	GATC	2 cut(s)	400, 409
LpnPI	CCDG	8 cut(s)	91, 156, 303, 447, 484, 498, 520, 594
Lsp1109I	GCAGC	3 cut(s)	142, 454, 514
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	5 cut(s)	515, 590, 660, 672, 684
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	2 cut(s)	402, 411
MboI	GATC	2 cut(s)	400, 409
MboII	GAAGA	6 cut(s)	4, 30, 33, 218, 410, 679
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	2 cut(s)	400, 409
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	5 cut(s)	175, 279, 369, 593, 702
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	8 cut(s)	85, 112, 237, 414, 423, 552, 577, 700
MseI	TTAA	2 cut(s)	296, 384
MslI	CAYNNNNRTG	1 cut(s)	536
MspI	CCGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	693
MwoI	GCNNNNNNNGC	2 cut(s)	232, 524
NcoI	CCATGG	2 cut(s)	62, 96
NdeII	GATC	2 cut(s)	400, 409
NheI	GCTAGC	1 cut(s)	514
NlaIII	CATG	4 cut(s)	66, 100, 535, 682
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	1 cut(s)	674
PaeR7I	CTCGAG	2 cut(s)	405, 414
PcsI	WCGNNNNNNNCGW	1 cut(s)	412
PctI	GAATGC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	58, 252
PkrI	GCNGC	4 cut(s)	7, 132, 469, 529
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	540
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	400, 409
RsaI	GTAC	2 cut(s)	356, 367
RsaNI	GTAC	2 cut(s)	355, 366
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	2 cut(s)	296, 384
SatI	GCNGC	4 cut(s)	6, 131, 468, 528
Sau3AI	GATC	2 cut(s)	400, 409
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	9 cut(s)	50, 148, 222, 279, 360, 423, 516, 520, 717
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	1 cut(s)	6
Sfr274I	CTCGAG	2 cut(s)	405, 414
SlaI	CTCGAG	2 cut(s)	405, 414
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	4 cut(s)	49, 359, 405, 414
SmoI	CTYRAG	4 cut(s)	49, 359, 405, 414
SpeI	ACTAGT	1 cut(s)	671
Sse9I	AATT	5 cut(s)	175, 279, 369, 593, 702
SspMI	CTAG	5 cut(s)	515, 590, 660, 672, 684
StyI	CCWWGG	3 cut(s)	62, 96, 476
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	255, 291, 406, 415
TasI	AATT	5 cut(s)	175, 279, 369, 593, 702
TfiI	GAWTC	2 cut(s)	58, 252
Tru1I	TTAA	2 cut(s)	296, 384
Tru9I	TTAA	2 cut(s)	296, 384
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	4 cut(s)	5, 130, 467, 527
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	4 cut(s)	219, 296, 324, 566
TspRI	CASTG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	175
XhoI	CTCGAG	2 cut(s)	405, 414
XspI	CTAG	5 cut(s)	515, 590, 660, 672, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.