Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0012411

Physical Location & Seq

Genomic Coordinates Reverse (-)

885972 .. 886178

Gene Structure 207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGAACATGAGGATGGGAGTTGTCTTCAACCCCGAGGCACTCGAGCTGTTTGTCATGCAGAAGGTTTTTGTTGTGTACTCGTGGTTGAAGCAACATGACATTCCAAAACCTAGATTGAAGACTAGTGACATGGCTAGGATGCTAGGGTTTGGAATTGGAGACGAACTTTATGACTTGATCGACAATCATCCACTGAAAACATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Crr6

Protein Analysis

69

Amino Acids

7.91

Weight (kDa)

6.71

Isoelectric Point (pI)

9.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Crr6	PF08847	2 - 59	9.5e-18	Chlororespiratory reduction 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47910 AT2G47910
fragaria_vesca	FvH4_1g01870
malus_domestica	MD02G1016600.v1.1 MD15G1161100.v1.1
prunus_persica	Prupe.7G256300_v2.0.a1
pyrus_communis	pycom02g01470 pycom02g01490
rosa_chinensis	RchiOBHm_Chr2g0086841
rosa_laevigata	RLG00000015809
rosa_multiflora	Rmu_sc0007954.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154090
rosa_rugosa	Rorug01G0470100.1 Rorug01G0470200
rosa_samantha	Rh2AG022700 Rh2BG023500 Rh2CG023700 Rh2DG023300
rosa_wichuraiana	Rw2G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	28, 88, 118
AhlI	ACTAGT	1 cut(s)	122
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	153
Ama87I	CYCGRG	2 cut(s)	32, 41
AvaI	CYCGRG	2 cut(s)	32, 41
BauI	CACGAG	1 cut(s)	79
BbsI	GAAGAC	2 cut(s)	16, 125
BccI	CCATC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	153
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	4 cut(s)	111, 123, 135, 143
BmeT110I	CYCGRG	2 cut(s)	32, 41
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	16, 125
BsaJI	CCNNGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	18, 144, 187
BsiHKCI	CYCGRG	2 cut(s)	32, 41
BsmAI	GTCTC	1 cut(s)	153
BsmBI	CGTCTC	1 cut(s)	153
BsoBI	CYCGRG	2 cut(s)	32, 41
Bsp143I	GATC	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	79
BstF5I	GGATG	3 cut(s)	18, 144, 187
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	177
BstV2I	GAAGAC	2 cut(s)	16, 125
BtsCI	GGATG	3 cut(s)	18, 144, 187
BtsIMutI	CAGTG	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	4 cut(s)	7, 55, 95, 130
CviJI	RGCY	2 cut(s)	46, 134
CviKI_1	RGCY	2 cut(s)	46, 134
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eco88I	CYCGRG	2 cut(s)	32, 41
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	4 cut(s)	10, 58, 98, 133
FaiI	YATR	6 cut(s)	8, 56, 96, 131, 171, 205
FatI	CATG	4 cut(s)	6, 54, 94, 129
FokI	GGATG	3 cut(s)	25, 151, 174
FspBI	CTAG	4 cut(s)	111, 123, 135, 143
Hin1II	CATG	4 cut(s)	10, 58, 98, 133
Hpy166II	GTNNAC	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	58
Hsp92II	CATG	4 cut(s)	10, 58, 98, 133
Kzo9I	GATC	1 cut(s)	177
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	4 cut(s)	111, 123, 135, 143
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	2 cut(s)	16, 130
MluCI	AATT	1 cut(s)	153
MnlI	CCTC	2 cut(s)	3, 28
MslI	CAYNNNNRTG	1 cut(s)	11
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	4 cut(s)	10, 58, 98, 133
NmuCI	GTSAC	1 cut(s)	125
PaeR7I	CTCGAG	1 cut(s)	41
PspXI	VCTCGAGB	1 cut(s)	41
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	177
SetI	ASST	3 cut(s)	48, 66, 112
SfaNI	GCATC	1 cut(s)	129
Sfr274I	CTCGAG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	1 cut(s)	153
SspMI	CTAG	4 cut(s)	111, 123, 135, 143
TaqI	TCGA	2 cut(s)	42, 180
TasI	AATT	1 cut(s)	153
TatI	WGTACW	1 cut(s)	75
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	41
XspI	CTAG	4 cut(s)	111, 123, 135, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.