Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012411

Physical Location & Seq

Genomic Coordinates Reverse (-)

12094993 .. 12096465

Gene Structure 1473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1161100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTGCAATCTTCCAAACTCTGCTTCCCGTTTGTTCTTCAAGACAGACCACATTATCCTCTCCTCCTCCATGGATCCCCCTCAAACCAATCTCAGATTCCATGGCCTCTTTGGCCATTTCACAGGCCAATAGGCAGCAGGGACAGGTGGCAGTCTCAGTTGCCTTCAACCCATCTGGGAATTTCGACATCTCTTTATATGATGAAGAAGAAGACACATCTAGTAAAGTTGAGCCTCCGATGCCGCCAAGTGAAGGCCGATTTGAAATAGTTATCGACAATGACGTAATTCGACGTCTTGATTTATCCCCGTTTCATACTGCAACTGGGATTACCATTCCTTCATCCGCCAAGCCAAAAGAGTTTCTTGAGCGTACAATCGGCTTTACCATCAATTACACAAGAGAAGATCCACGTGATCCTCGAGAACTATCCGAATTCCCTGACATAAGGCTCTGGTTTTTGAGACTTGATGCCGCTTATCCCTGGTTGCCCGTCCTCTTGGATTGGCGCGCCGGAGAACTAGCTCGTTATGCTGCCATGTTGGTTCCACACCAGATGAACATGAGAATGGGAGTTGTCTTCAACCCTGAGGCACTCGAGTTGTTCGTAATGCAGAAGGTTTTTGTTGTGTACTCATGGTTGAAGGAACATGACATTCCGAAGCCTAGATTGAAGACTAGTGACATGGCTAGGATGCTAGGTTTTGGAATTGGGGACGAACTTTATGACTTGATCGACAAGCATCCACTGAGAACATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Crr6

Protein Analysis

255

Amino Acids

28.85

Weight (kDa)

5.2

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Crr6	PF08847	92 - 245	3.3e-59	Chlororespiratory reduction 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47910 AT2G47910
fragaria_vesca	FvH4_1g01870
malus_domestica	MD02G1016600.v1.1 MD15G1161100.v1.1
prunus_persica	Prupe.7G256300_v2.0.a1
pyrus_communis	pycom02g01470 pycom02g01490
rosa_chinensis	RchiOBHm_Chr2g0086841
rosa_laevigata	RLG00000015809
rosa_multiflora	Rmu_sc0007954.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154090
rosa_rugosa	Rorug01G0470100.1 Rorug01G0470200
rosa_samantha	Rh2AG022700 Rh2BG023500 Rh2CG023700 Rh2DG023300
rosa_wichuraiana	Rw2G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	298
AccII	CGCG	1 cut(s)	513
AciI	CCGC	3 cut(s)	245, 348, 477
AclWI	GGATC	4 cut(s)	70, 83, 404, 413
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	181, 437
AcvI	CACGTG	1 cut(s)	416
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	2 cut(s)	376, 635
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	6 cut(s)	42, 169, 266, 586, 646, 676
AhlI	ACTAGT	1 cut(s)	680
AjnI	CCWGG	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	4 cut(s)	9, 41, 82, 114
AluBI	AGCT	1 cut(s)	527
AluI	AGCT	1 cut(s)	527
Alw26I	GTCTC	2 cut(s)	160, 460
AlwI	GGATC	4 cut(s)	70, 83, 404, 413
Ama87I	CYCGRG	2 cut(s)	423, 599
AoxI	GGCC	4 cut(s)	105, 114, 126, 256
ApeKI	GCWGC	3 cut(s)	5, 136, 536
ApoI	RAATTY	2 cut(s)	181, 437
AscI	GGCGCGCC	1 cut(s)	511
AspLEI	GCGC	2 cut(s)	513, 515
AvaI	CYCGRG	2 cut(s)	423, 599
AxyI	CCTNAGG	1 cut(s)	591
BalI	TGGCCA	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	75
BbrPI	CACGTG	1 cut(s)	416
BbsI	GAAGAC	3 cut(s)	219, 574, 683
BbvI	GCAGC	2 cut(s)	148, 523
BccI	CCATC	2 cut(s)	181, 398
BciT130I	CCWGG	1 cut(s)	487
BcoDI	GTCTC	2 cut(s)	160, 460
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	6 cut(s)	222, 524, 669, 681, 693, 701
BglI	GCCNNNNNGGC	1 cut(s)	113
BisI	GCNGC	5 cut(s)	6, 137, 245, 477, 537
BlsI	GCNGC	5 cut(s)	7, 138, 246, 478, 538
Bme1390I	CCNGG	1 cut(s)	487
BmeT110I	CYCGRG	2 cut(s)	423, 599
BmiI	GGNNCC	2 cut(s)	77, 549
BmrFI	CCNGG	1 cut(s)	487
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	4 cut(s)	231, 463, 687, 754
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	3 cut(s)	219, 574, 683
BpuEI	CTTGAG	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	295
BsaJI	CCNNGG	3 cut(s)	71, 102, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	331
Bse21I	CCTNAGG	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	3 cut(s)	71, 102, 485
BseGI	GGATG	3 cut(s)	344, 702, 745
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	4 cut(s)	108, 171, 582, 743
BseNI	ACTGG	1 cut(s)	331
BsePI	GCGCGC	1 cut(s)	511
BseRI	GAGGAG	2 cut(s)	54, 57
BseXI	GCAGC	2 cut(s)	148, 523
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	4 cut(s)	107, 116, 128, 258
BsiHKCI	CYCGRG	2 cut(s)	423, 599
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	2 cut(s)	156, 731
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	2 cut(s)	160, 460
BsmFI	GGGAC	2 cut(s)	156, 731
BsnI	GGCC	4 cut(s)	107, 116, 128, 258
BsoBI	CYCGRG	2 cut(s)	423, 599
Bsp143I	GATC	4 cut(s)	75, 409, 418, 735
Bsp19I	CCATGG	2 cut(s)	71, 102
BspACI	CCGC	3 cut(s)	245, 348, 477
BspANI	GGCC	4 cut(s)	107, 116, 128, 258
BspCNI	CTCAG	4 cut(s)	107, 170, 583, 744
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	2 cut(s)	77, 549
BspPI	GGATC	4 cut(s)	70, 83, 404, 413
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	3 cut(s)	71, 102, 485
BssHII	GCGCGC	1 cut(s)	511
BssMI	GATC	4 cut(s)	75, 409, 418, 735
BssNI	GRCGYC	1 cut(s)	295
BssT1I	CCWWGG	2 cut(s)	71, 102
Bst2UI	CCWGG	1 cut(s)	487
BstACI	GRCGYC	1 cut(s)	295
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	4 cut(s)	94, 157, 591, 752
BstDSI	CCRYGG	2 cut(s)	71, 102
BstF5I	GGATG	3 cut(s)	344, 702, 745
BstFNI	CGCG	1 cut(s)	513
BstHHI	GCGC	2 cut(s)	513, 515
BstKTI	GATC	4 cut(s)	78, 412, 421, 738
BstMAI	GTCTC	2 cut(s)	160, 460
BstMBI	GATC	4 cut(s)	75, 409, 418, 735
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 241, 533
BstNI	CCWGG	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	485
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	148, 523
BstV2I	GAAGAC	3 cut(s)	219, 574, 683
BstX2I	RGATCY	2 cut(s)	75, 409
BstYI	RGATCY	2 cut(s)	75, 409
Bsu36I	CCTNAGG	1 cut(s)	591
BsuRI	GGCC	4 cut(s)	107, 116, 128, 258
BtgI	CCRYGG	2 cut(s)	71, 102
BtsCI	GGATG	3 cut(s)	344, 702, 745
BtsIMutI	CAGTG	1 cut(s)	749
Cac8I	GCNNGC	1 cut(s)	513
CfoI	GCGC	2 cut(s)	513, 515
Csp6I	GTAC	2 cut(s)	375, 634
CviAII	CATG	7 cut(s)	72, 103, 541, 565, 639, 653, 688
CviQI	GTAC	2 cut(s)	375, 634
DdeI	CTNAG	4 cut(s)	94, 157, 591, 752
DpnI	GATC	4 cut(s)	77, 411, 420, 737
DpnII	GATC	4 cut(s)	75, 409, 418, 735
EaeI	YGGCCR	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	71, 102
Eco72I	CACGTG	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	2 cut(s)	423, 599
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	485
EcoT14I	CCWWGG	2 cut(s)	71, 102
ErhI	CCWWGG	2 cut(s)	71, 102
FaeI	CATG	7 cut(s)	75, 106, 544, 568, 642, 656, 691
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	2 cut(s)	156, 731
FatI	CATG	7 cut(s)	71, 102, 540, 564, 638, 652, 687
Fnu4HI	GCNGC	5 cut(s)	6, 137, 245, 477, 537
FokI	GGATG	3 cut(s)	331, 709, 732
Fsp4HI	GCNGC	5 cut(s)	6, 137, 245, 477, 537
FspBI	CTAG	6 cut(s)	222, 524, 669, 681, 693, 701
GlaI	GCGC	2 cut(s)	512, 514
GluI	GCNGC	5 cut(s)	6, 137, 245, 477, 537
HaeIII	GGCC	4 cut(s)	107, 116, 128, 258
HapII	CCGG	1 cut(s)	516
HhaI	GCGC	2 cut(s)	513, 515
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	7 cut(s)	75, 106, 544, 568, 642, 656, 691
Hin6I	GCGC	2 cut(s)	511, 513
HinP1I	GCGC	2 cut(s)	511, 513
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	516
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	4 cut(s)	97, 240, 436, 663
Hpy188III	TCNNGA	4 cut(s)	42, 299, 368, 425
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	5 cut(s)	175, 248, 351, 613, 640
HpyCH4IV	ACGT	3 cut(s)	285, 295, 415
HpyCH4V	TGCA	3 cut(s)	8, 323, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 241, 533
HpyF3I	CTNAG	4 cut(s)	94, 157, 591, 752
HpySE526I	ACGT	3 cut(s)	285, 295, 415
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	7 cut(s)	75, 106, 544, 568, 642, 656, 691
HspAI	GCGC	2 cut(s)	511, 513
Kzo9I	GATC	4 cut(s)	75, 409, 418, 735
Lsp1109I	GCAGC	2 cut(s)	148, 523
LweI	GCATC	4 cut(s)	231, 463, 687, 754
MaeI	CTAG	6 cut(s)	222, 524, 669, 681, 693, 701
MaeII	ACGT	3 cut(s)	285, 295, 415
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	4 cut(s)	77, 411, 420, 737
MboI	GATC	4 cut(s)	75, 409, 418, 735
MboII	GAAGA	8 cut(s)	4, 30, 218, 221, 224, 419, 574, 688
MflI	RGATCY	2 cut(s)	75, 409
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	5 cut(s)	181, 288, 394, 437, 711
MluNI	TGGCCA	1 cut(s)	116
MnlI	CCTC	9 cut(s)	70, 75, 78, 92, 118, 246, 432, 509, 586
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	569
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	487
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	113, 241, 533
NcoI	CCATGG	2 cut(s)	71, 102
NdeII	GATC	4 cut(s)	75, 409, 418, 735
NlaIII	CATG	7 cut(s)	75, 106, 544, 568, 642, 656, 691
NlaIV	GGNNCC	2 cut(s)	77, 549
NmuCI	GTSAC	1 cut(s)	683
PaeR7I	CTCGAG	2 cut(s)	423, 599
PalAI	GGCGCGCC	1 cut(s)	511
PauI	GCGCGC	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	3 cut(s)	282, 421, 606
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	5 cut(s)	7, 138, 246, 478, 538
PmaCI	CACGTG	1 cut(s)	416
PmlI	CACGTG	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	485
PspCI	CACGTG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	2 cut(s)	77, 549
PspXI	VCTCGAGB	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	75, 409
PteI	GCGCGC	1 cut(s)	511
RsaI	GTAC	2 cut(s)	376, 635
RsaNI	GTAC	2 cut(s)	375, 634
RseI	CAYNNNNRTG	1 cut(s)	569
SatI	GCNGC	5 cut(s)	6, 137, 245, 477, 537
Sau3AI	GATC	4 cut(s)	75, 409, 418, 735
ScrFI	CCNGG	1 cut(s)	487
SetI	ASST	7 cut(s)	150, 288, 298, 418, 529, 624, 706
SfaNI	GCATC	4 cut(s)	231, 463, 687, 754
SfiI	GGCCNNNNNGGCC	1 cut(s)	113
Sfr274I	CTCGAG	2 cut(s)	423, 599
SgsI	GGCGCGCC	1 cut(s)	511
SlaI	CTCGAG	2 cut(s)	423, 599
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	3 cut(s)	368, 423, 599
SmoI	CTYRAG	3 cut(s)	368, 423, 599
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	5 cut(s)	181, 288, 394, 437, 711
SsiI	CCGC	3 cut(s)	245, 348, 477
SspMI	CTAG	6 cut(s)	222, 524, 669, 681, 693, 701
StyD4I	CCNGG	1 cut(s)	485
StyI	CCWWGG	2 cut(s)	71, 102
TaiI	ACGT	3 cut(s)	288, 298, 418
TaqI	TCGA	6 cut(s)	186, 276, 292, 424, 600, 738
TasI	AATT	5 cut(s)	181, 288, 394, 437, 711
TatI	WGTACW	1 cut(s)	633
TauI	GCSGC	2 cut(s)	247, 479
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	1 cut(s)	756
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	3 cut(s)	5, 136, 536
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	4 cut(s)	219, 305, 333, 575
TspRI	CASTG	1 cut(s)	756
XapI	RAATTY	2 cut(s)	181, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	2 cut(s)	423, 599
XspI	CTAG	6 cut(s)	222, 524, 669, 681, 693, 701
ZraI	GACGTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.