AT2G47950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012026
Physical Location & Seq
Forward (+)
19624022 .. 19624922
901 bp
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UTR
Exon/CDS
Intron
AT2G47950.1

Sequence Viewer

Length: 387 bp
ATGAACACAACCAACAACGTGTTTGATGTGTCACCGTTCTTGCTTTTAGAAGCATCTGCAGATTCCGAAGCTGGCCACGACAGCGTTGACGATGATAAATGCGTTAAGGATTACGATCTTGGTCATGAGTCTTCTAGTGCCAGTTCTTGCGAGACGTCTTGCGTGAGTCAGAGAACGAGTTTGTTAGGTTTTGACCTGCAGGACGATACGGTGAATCATGAAGAAAGAGACGCCGGAGATGAAGAAGACGAAGACGGAGAAGGAGAAGTGAATAGCTACATAAGATGTGGGAGAAGCCAACGTGAAAATCTGGCTGTGGATTCTGCTGCGGTGGTGAGTGAGATGGATCAAAATCGAATGTTCTGGGAAGCTTGTCTCGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.02

Weight (kDa)

4.05

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47950 AT2G47950 AT3G62990
fragaria_vesca FvH4_2g24610
prunus_persica Prupe.1G143800_v2.0.a1 Prupe.8G251300_v2.0.a1
pyrus_communis pycom13g15110 pycom16g14850
rosa_chinensis RchiOBHm_Chr6g0292431
rosa_laevigata RLG00000012025
rosa_multiflora Rmu_sc0012226.1_g000006 Rmu_sc0021303.1_g000002
rosa_roxburghii Rroxscaffold_7G00175070
rosa_rugosa Rorug06G0226600
rosa_samantha Rh6AG339900 Rh6BG347100 Rh6CG354000 Rh6DG339900
rosa_wichuraiana Rw6G029580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 204
AciI CCGC 1 cut(s) 329
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 73
AcyI GRCGYC 2 cut(s) 155, 231
AflIII ACRYGT 1 cut(s) 18
AluBI AGCT 3 cut(s) 71, 276, 371
AluI AGCT 3 cut(s) 71, 276, 371
Alw26I GTCTC 3 cut(s) 146, 222, 380
AlwI GGATC 1 cut(s) 354
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 24, 223, 346
BalI TGGCCA 1 cut(s) 75
BbsI GAAGAC 3 cut(s) 123, 252, 258
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 337
BcoDI GTCTC 3 cut(s) 146, 222, 380
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 2 cut(s) 57, 197
BfuAI ACCTGC 1 cut(s) 204
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
BmsI GCATC 1 cut(s) 62
BpiI GAAGAC 3 cut(s) 123, 252, 258
BsaBI GATNNNNATC 2 cut(s) 114, 351
BsaHI GRCGYC 2 cut(s) 155, 231
Bse1I ACTGG 1 cut(s) 141
Bse8I GATNNNNATC 2 cut(s) 114, 351
BseJI GATNNNNATC 2 cut(s) 114, 351
BseNI ACTGG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 313
BshFI GGCC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 234
BsmAI GTCTC 3 cut(s) 146, 222, 380
BsmBI CGTCTC 2 cut(s) 146, 222
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 115, 346
BspACI CCGC 1 cut(s) 329
BspANI GGCC 1 cut(s) 75
BspHI TCATGA 2 cut(s) 124, 217
BspMAI CTGCAG 2 cut(s) 61, 201
BspMI ACCTGC 1 cut(s) 204
BspPI GGATC 1 cut(s) 354
BsrI ACTGG 1 cut(s) 141
BssMI GATC 2 cut(s) 115, 346
BssNI GRCGYC 2 cut(s) 155, 231
Bst4CI ACNGT 2 cut(s) 36, 211
BstACI GRCGYC 2 cut(s) 155, 231
BstC8I GCNNGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 118, 349
BstMAI GTCTC 3 cut(s) 146, 222, 380
BstMBI GATC 2 cut(s) 115, 346
BstMWI GCNNNNNNNGC 2 cut(s) 81, 377
BstSFI CTRYAG 2 cut(s) 57, 197
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 3 cut(s) 123, 252, 258
BsuRI GGCC 1 cut(s) 75
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 73
CciI TCATGA 2 cut(s) 124, 217
CseI GACGC 1 cut(s) 239
CviAII CATG 2 cut(s) 125, 218
CviJI RGCY 6 cut(s) 71, 75, 276, 297, 314, 371
CviKI_1 RGCY 6 cut(s) 71, 75, 276, 297, 314, 371
DpnI GATC 2 cut(s) 117, 348
DpnII GATC 2 cut(s) 115, 346
EaeI YGGCCR 1 cut(s) 73
Esp3I CGTCTC 2 cut(s) 146, 222
FaeI CATG 2 cut(s) 128, 221
FaiI YATR 3 cut(s) 126, 219, 281
FatI CATG 2 cut(s) 124, 217
Fnu4HI GCNGC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 327
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 2 cut(s) 155, 231
Hin1II CATG 2 cut(s) 128, 221
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 5 cut(s) 62, 128, 166, 214, 320
HpaII CCGG 1 cut(s) 234
HphI GGTGA 3 cut(s) 24, 223, 346
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 67, 171
Hpy188III TCNNGA 3 cut(s) 125, 218, 384
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 2 cut(s) 36, 211
HpyCH4IV ACGT 3 cut(s) 18, 155, 301
HpyCH4V TGCA 2 cut(s) 59, 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 377
HpySE526I ACGT 3 cut(s) 18, 155, 301
Hsp92I GRCGYC 2 cut(s) 155, 231
Hsp92II CATG 2 cut(s) 128, 221
Kzo9I GATC 2 cut(s) 115, 346
LpnPI CCDG 7 cut(s) 57, 154, 185, 209, 247, 296, 349
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 62
MaeI CTAG 1 cut(s) 135
MaeII ACGT 3 cut(s) 18, 155, 301
MaeIII GTNAC 1 cut(s) 30
MalI GATC 2 cut(s) 117, 348
MboI GATC 2 cut(s) 115, 346
MboII GAAGA 5 cut(s) 123, 233, 254, 257, 263
MlsI TGGCCA 1 cut(s) 75
MluNI TGGCCA 1 cut(s) 75
MlyI GAGTC 2 cut(s) 137, 175
Mox20I TGGCCA 1 cut(s) 75
MscI TGGCCA 1 cut(s) 75
MseI TTAA 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 75
MspI CCGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 81, 377
NdeII GATC 2 cut(s) 115, 346
NlaIII CATG 2 cut(s) 128, 221
NmuCI GTSAC 1 cut(s) 30
PagI TCATGA 2 cut(s) 124, 217
PfeI GAWTC 3 cut(s) 62, 214, 320
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 2 cut(s) 136, 174
PpsI GAGTC 2 cut(s) 136, 174
PstI CTGCAG 2 cut(s) 61, 201
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 2 cut(s) 115, 346
SbfI CCTGCAGG 1 cut(s) 201
SchI GAGTC 2 cut(s) 137, 175
SdaI CCTGCAGG 1 cut(s) 201
SetI ASST 8 cut(s) 21, 73, 158, 190, 198, 278, 304, 373
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 2 cut(s) 57, 197
Sse8387I CCTGCAGG 1 cut(s) 201
SsiI CCGC 1 cut(s) 329
SspMI CTAG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 36, 211
TaiI ACGT 3 cut(s) 21, 158, 304
TaqI TCGA 1 cut(s) 355
TfiI GAWTC 3 cut(s) 62, 214, 320
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 3 cut(s) 17, 234, 255
TspGWI ACGGA 1 cut(s) 270
XspI CTAG 1 cut(s) 135
ZraI GACGTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.