Prupe.1G143800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012026
Physical Location & Seq
Forward (+)
11322978 .. 11323789
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G143800.1

Sequence Viewer

Length: 420 bp
ATGGATTGCAAGGAGGGTTTTGTTGATGTGTCTTGCTTCTTTCTATGGGAAGGCAGTGCAGATTCAGAGGCAGATCATCACACTGGCCCTCTGAATGCAAACAACAGCTCTAAAATAGAAATAGCACTTGAAGCTGAGGATGCAGAGTCATGCAGCTCTGGCACACTTAGTGATCATGCATTTGGTGCTTGTGAGGCTCTTGATAGTTATTGTAAGAATGCCGAAGAGCGTCAGCAGAGTCGGTGTAGTAGCAAGGTGGGGCTGCAGTCAGATGCAGGCTCAGGTTATGAGGAAGATGAAGAAGAAGAAGTGGAATCAAAGATGGTTTGTCATGTTAACAAAAGCATGGATGAGATGGAGGAGGATAGGCTCTTTTGGGAGACTTGCATGGCAGTAGGGTACCCATCATCAAGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.23

Weight (kDa)

4.15

Isoelectric Point (pI)

74.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47950 AT2G47950 AT3G62990
fragaria_vesca FvH4_2g24610
prunus_persica Prupe.1G143800_v2.0.a1 Prupe.8G251300_v2.0.a1
pyrus_communis pycom13g15110 pycom16g14850
rosa_chinensis RchiOBHm_Chr6g0292431
rosa_laevigata RLG00000012025
rosa_multiflora Rmu_sc0012226.1_g000006 Rmu_sc0021303.1_g000002
rosa_roxburghii Rroxscaffold_7G00175070
rosa_rugosa Rorug06G0226600
rosa_samantha Rh6AG339900 Rh6BG347100 Rh6CG354000 Rh6DG339900
rosa_wichuraiana Rw6G029580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 399
AccB1I GGYRCC 1 cut(s) 399
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 1 cut(s) 401
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 3 cut(s) 108, 134, 156
AluI AGCT 3 cut(s) 108, 134, 156
Alw26I GTCTC 1 cut(s) 374
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 153, 262
Asp718I GGTACC 1 cut(s) 399
AspS9I GGNCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 399
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 165, 249
BccI CCATC 3 cut(s) 316, 349, 412
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 263
BisI GCNGC 2 cut(s) 154, 263
BlsI GCNGC 2 cut(s) 155, 264
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 401
BmsI GCATC 2 cut(s) 130, 262
Bpu10I CCTNAGC 2 cut(s) 135, 280
Bse1I ACTGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 145, 355
BseMII CTCAG 2 cut(s) 126, 294
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 2 cut(s) 165, 249
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 87
BshNI GGYRCC 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 374
BsmI GAATGC 2 cut(s) 100, 223
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 73, 172
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 127, 293
BspLI GGNNCC 1 cut(s) 401
BspMAI CTGCAG 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 399
BsrI ACTGG 1 cut(s) 88
BssMI GATC 2 cut(s) 73, 172
Bst6I CTCTTC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 3 cut(s) 135, 167, 280
BstF5I GGATG 2 cut(s) 145, 355
BstKTI GATC 2 cut(s) 76, 175
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 2 cut(s) 73, 172
BstMWI GCNNNNNNNGC 5 cut(s) 131, 140, 159, 185, 194
BstSFI CTRYAG 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 165, 249
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 2 cut(s) 145, 355
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 61, 81
Cac8I GCNNGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 400
CviAII CATG 5 cut(s) 150, 176, 332, 346, 388
CviJI RGCY 8 cut(s) 87, 108, 134, 156, 197, 262, 279, 370
CviKI_1 RGCY 8 cut(s) 87, 108, 134, 156, 197, 262, 279, 370
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 3 cut(s) 135, 167, 280
DpnI GATC 2 cut(s) 75, 174
DpnII GATC 2 cut(s) 73, 172
DraIII CACNNNGTG 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 181
FaeI CATG 5 cut(s) 153, 179, 335, 349, 391
FaiI YATR 7 cut(s) 46, 151, 177, 288, 333, 347, 389
FatI CATG 5 cut(s) 149, 175, 331, 345, 387
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 154, 263
FokI GGATG 2 cut(s) 152, 362
Fsp4HI GCNGC 2 cut(s) 154, 263
GluI GCNGC 2 cut(s) 154, 263
HaeIII GGCC 1 cut(s) 87
HgaI GACGC 1 cut(s) 218
Hin1II CATG 5 cut(s) 153, 179, 335, 349, 391
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 4 cut(s) 62, 146, 238, 314
HpaI GTTAAC 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 3 cut(s) 67, 93, 271
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 44
HpyCH4V TGCA 9 cut(s) 9, 59, 98, 143, 153, 179, 265, 275, 387
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 140, 159, 185, 194
HpyF3I CTNAG 3 cut(s) 135, 167, 280
Hsp92II CATG 5 cut(s) 153, 179, 335, 349, 391
KpnI GGTACC 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 172
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 2 cut(s) 73, 172
LguI GCTCTTC 1 cut(s) 219
LpnPI CCDG 4 cut(s) 69, 144, 261, 267
Lsp1109I GCAGC 2 cut(s) 165, 249
LweI GCATC 2 cut(s) 130, 262
MalI GATC 2 cut(s) 75, 174
MboI GATC 2 cut(s) 73, 172
MboII GAAGA 5 cut(s) 236, 305, 311, 314, 317
MlyI GAGTC 2 cut(s) 155, 247
MnlI CCTC 8 cut(s) 7, 61, 99, 130, 187, 283, 352, 355
Mph1103I ATGCAT 1 cut(s) 181
MseI TTAA 2 cut(s) 336, 418
Mva1269I GAATGC 2 cut(s) 100, 223
MwoI GCNNNNNNNGC 5 cut(s) 131, 140, 159, 185, 194
NdeII GATC 2 cut(s) 73, 172
NlaIII CATG 5 cut(s) 153, 179, 335, 349, 391
NlaIV GGNNCC 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 219
PctI GAATGC 2 cut(s) 100, 223
PfeI GAWTC 2 cut(s) 62, 314
PkrI GCNGC 2 cut(s) 155, 264
PleI GAGTC 2 cut(s) 154, 246
PpsI GAGTC 2 cut(s) 154, 246
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 1 cut(s) 86
PstI CTGCAG 1 cut(s) 267
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 336, 418
SatI GCNGC 2 cut(s) 154, 263
Sau3AI GATC 2 cut(s) 73, 172
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 2 cut(s) 155, 247
SetI ASST 5 cut(s) 110, 136, 158, 258, 286
SfaNI GCATC 2 cut(s) 130, 262
SfcI CTRYAG 1 cut(s) 263
TfiI GAWTC 2 cut(s) 62, 314
Tru1I TTAA 2 cut(s) 336, 418
Tru9I TTAA 2 cut(s) 336, 418
TscAI CASTG 2 cut(s) 61, 88
TseI GCWGC 2 cut(s) 153, 262
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 2 cut(s) 61, 88
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.