Rmu_sc0012226.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012226.1
OG0012026
Physical Location & Seq
Reverse (-)
30826 .. 31275
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012226.1_g000006.1.cds

Sequence Viewer

Length: 450 bp
atgactcaatcctactattcatgctttggcatggagaggaacatggtgttggtgatgaagaagcagggccaagctaatgtggatgtctctcctttcttgctctttgaggacagtggggattctgaagctgctgctgaggttgtttttgatgttcccttggccgaggatgatgctgagtcatgcagctatgactcagctgatatctccagtgcggatgagctcatcgtaaatggtgaagatgatgaagatgatcatggtgttcgagaatatcggagttatgttgacgatcatgaggaggaagaggaagaggaagaggtaatgtcttcagtttatcagagatgcggccaccagctgaaatcaactgtttctgttgattcaacaaaggagtttgagatgttgaatgaggtggaaaagagcaagctattttgggagacttgcttggcatcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.86

Weight (kDa)

4.05

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47950 AT2G47950 AT3G62990
fragaria_vesca FvH4_2g24610
prunus_persica Prupe.1G143800_v2.0.a1 Prupe.8G251300_v2.0.a1
pyrus_communis pycom13g15110 pycom16g14850
rosa_chinensis RchiOBHm_Chr6g0292431
rosa_laevigata RLG00000012025
rosa_multiflora Rmu_sc0012226.1_g000006 Rmu_sc0021303.1_g000002
rosa_roxburghii Rroxscaffold_7G00175070
rosa_rugosa Rorug06G0226600
rosa_samantha Rh6AG339900 Rh6BG347100 Rh6CG354000 Rh6DG339900
rosa_wichuraiana Rw6G029580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 212, 342
AcoI YGGCCR 2 cut(s) 159, 343
AcuI CTGAAG 2 cut(s) 144, 309
AgsI TTSAA 2 cut(s) 378, 400
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 7 cut(s) 74, 128, 186, 197, 220, 352, 421
AluI AGCT 7 cut(s) 74, 128, 186, 197, 220, 352, 421
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 91, 425
AoxI GGCC 3 cut(s) 67, 159, 343
ApeKI GCWGC 3 cut(s) 128, 131, 183
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 64, 245
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 115, 118, 195
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 91, 425
BisI GCNGC 4 cut(s) 129, 132, 184, 343
BlsI GCNGC 4 cut(s) 130, 133, 185, 344
BmgT120I GGNCC 1 cut(s) 67
BmsI GCATC 2 cut(s) 160, 329
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 190
Bpu10I CCTNAGC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 156, 162
Bse1I ACTGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 156, 162
BseGI GGATG 4 cut(s) 88, 172, 220, 443
BseMII CTCAG 3 cut(s) 126, 165, 207
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 115, 118, 195
BshFI GGCC 3 cut(s) 69, 161, 345
BsiHKAI GWGCWC 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 91, 425
BsnI GGCC 3 cut(s) 69, 161, 345
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 250, 286
BspACI CCGC 2 cut(s) 212, 342
BspANI GGCC 3 cut(s) 69, 161, 345
BspCNI CTCAG 3 cut(s) 127, 166, 206
BspHI TCATGA 1 cut(s) 289
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 2 cut(s) 156, 162
BssMI GATC 2 cut(s) 250, 286
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 113, 364
Bst6I CTCTTC 3 cut(s) 294, 300, 306
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 3 cut(s) 135, 174, 193
BstF5I GGATG 4 cut(s) 88, 172, 220, 443
BstKTI GATC 2 cut(s) 253, 289
BstMAI GTCTC 2 cut(s) 91, 425
BstMBI GATC 2 cut(s) 250, 286
BstV1I GCAGC 3 cut(s) 115, 118, 195
BstV2I GAAGAC 1 cut(s) 315
BsuRI GGCC 3 cut(s) 69, 161, 345
BtsCI GGATG 4 cut(s) 88, 172, 220, 443
BtsIMutI CAGTG 2 cut(s) 118, 214
Cac8I GCNNGC 1 cut(s) 419
CciI TCATGA 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 6 cut(s) 21, 31, 43, 180, 254, 290
DdeI CTNAG 3 cut(s) 135, 174, 193
DpnI GATC 2 cut(s) 252, 288
DpnII GATC 2 cut(s) 250, 286
EaeI YGGCCR 2 cut(s) 159, 343
Eam1104I CTCTTC 3 cut(s) 294, 300, 306
EarI CTCTTC 3 cut(s) 294, 300, 306
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 222
Eco32I GATATC 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 144, 309
EcoICRI GAGCTC 1 cut(s) 220
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 6 cut(s) 24, 34, 46, 183, 257, 293
FaiI YATR 8 cut(s) 22, 32, 44, 181, 189, 255, 279, 291
FatI CATG 6 cut(s) 20, 30, 42, 179, 253, 289
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 4 cut(s) 129, 132, 184, 343
FokI GGATG 4 cut(s) 95, 179, 227, 430
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 4 cut(s) 129, 132, 184, 343
GluI GCNGC 4 cut(s) 129, 132, 184, 343
GsuI CTGGAG 1 cut(s) 190
HaeIII GGCC 3 cut(s) 69, 161, 345
Hin1II CATG 6 cut(s) 24, 34, 46, 183, 257, 293
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 5 cut(s) 4, 119, 176, 191, 374
HphI GGTGA 2 cut(s) 64, 245
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 124, 273, 336
Hpy188III TCNNGA 3 cut(s) 263, 290, 447
Hpy8I GTNNAC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 113, 364
HpyCH4V TGCA 1 cut(s) 183
HpyF3I CTNAG 3 cut(s) 135, 174, 193
Hsp92II CATG 6 cut(s) 24, 34, 46, 183, 257, 293
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 2 cut(s) 250, 286
LpnPI CCDG 3 cut(s) 50, 220, 362
Lsp1109I GCAGC 3 cut(s) 115, 118, 195
LweI GCATC 2 cut(s) 160, 329
MalI GATC 2 cut(s) 252, 288
MboI GATC 2 cut(s) 250, 286
MboII GAAGA 7 cut(s) 70, 248, 257, 311, 315, 317, 323
MhlI GDGCHC 1 cut(s) 222
MlyI GAGTC 2 cut(s) 185, 185
MspA1I CMGCKG 2 cut(s) 197, 352
NdeII GATC 2 cut(s) 250, 286
NlaIII CATG 6 cut(s) 24, 34, 46, 183, 257, 293
NmeAIII GCCGAG 1 cut(s) 187
PagI TCATGA 1 cut(s) 289
PfeI GAWTC 2 cut(s) 119, 374
PkrI GCNGC 4 cut(s) 130, 133, 185, 344
PleI GAGTC 2 cut(s) 184, 185
PpsI GAGTC 2 cut(s) 184, 185
Psp124BI GAGCTC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 67
PvuII CAGCTG 2 cut(s) 197, 352
SacI GAGCTC 1 cut(s) 222
SatI GCNGC 4 cut(s) 129, 132, 184, 343
Sau3AI GATC 2 cut(s) 250, 286
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 2 cut(s) 185, 185
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 2 cut(s) 160, 329
SsiI CCGC 2 cut(s) 212, 342
SstI GAGCTC 1 cut(s) 222
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 113, 364
TaqI TCGA 1 cut(s) 262
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 2 cut(s) 119, 374
TscAI CASTG 2 cut(s) 118, 214
TseI GCWGC 3 cut(s) 128, 131, 183
TspDTI ATGAA 3 cut(s) 9, 71, 258
TspRI CASTG 2 cut(s) 118, 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.