Rh6BG347100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012026
Physical Location & Seq
Reverse (-)
57810252 .. 57811309
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG347100.1

Sequence Viewer

Length: 459 bp
ATGCTGGGAATGACTCAATCCTACTATTCATGCTTTGGCATGGAGAGAAACATGGAGTTGGTGATGAAGAAGCAGGGCCAAGCTAATGTGGACGTCTCCCCTTTCTTGCTCTTTGAGGACAGTGGGGATTCTGAAGCTGCTGCTGAGGTTGTTTTTGATGTTCCCTTGGCCGAGGATGATGCTGAGTCATGCAGCTATGACTCGGCTGATATCTCCAGTGCGGATGAGCTCATCGTAAATGGTGAAGATGATGAAGATGATCATGGTGTTCGAGAATATCGGAGTTATGTTGATGATCATGAGGAGGAAGAGGAAGAGGAAGAGGTAATGTCTTCAGTTTATCAGAGATGGGGGCACCAGCTGAAATCAACTGTTTCTGTTGATTCAACAAAGGAGTTTGAGATGTTGAATGAGGTGGAAAAGAGCAAGCTATTTTGGGAGACTTGCTTGGCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.27

Weight (kDa)

4.05

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47950 AT2G47950 AT3G62990
fragaria_vesca FvH4_2g24610
prunus_persica Prupe.1G143800_v2.0.a1 Prupe.8G251300_v2.0.a1
pyrus_communis pycom13g15110 pycom16g14850
rosa_chinensis RchiOBHm_Chr6g0292431
rosa_laevigata RLG00000012025
rosa_multiflora Rmu_sc0012226.1_g000006 Rmu_sc0021303.1_g000002
rosa_roxburghii Rroxscaffold_7G00175070
rosa_rugosa Rorug06G0226600
rosa_samantha Rh6AG339900 Rh6BG347100 Rh6CG354000 Rh6DG339900
rosa_wichuraiana Rw6G029580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 354
AciI CCGC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 168
AcuI CTGAAG 2 cut(s) 153, 318
AcyI GRCGYC 1 cut(s) 93
AgsI TTSAA 2 cut(s) 387, 409
AluBI AGCT 6 cut(s) 83, 137, 195, 229, 361, 430
AluI AGCT 6 cut(s) 83, 137, 195, 229, 361, 430
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 100, 434
AoxI GGCC 2 cut(s) 76, 168
ApeKI GCWGC 3 cut(s) 137, 140, 192
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 73, 254
BaeGI GKGCMC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 3 cut(s) 124, 127, 204
BccI CCATC 1 cut(s) 342
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BclI TGATCA 2 cut(s) 259, 295
BcoDI GTCTC 2 cut(s) 100, 434
BisI GCNGC 3 cut(s) 138, 141, 193
BlsI GCNGC 3 cut(s) 139, 142, 194
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 356
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 165, 171
Bse1I ACTGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 165, 171
BseGI GGATG 3 cut(s) 181, 229, 452
BseMII CTCAG 2 cut(s) 135, 174
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 3 cut(s) 124, 127, 204
BseYI CCCAGC 1 cut(s) 4
BshFI GGCC 2 cut(s) 78, 170
BshNI GGYRCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 231
BsmAI GTCTC 2 cut(s) 100, 434
BsmBI CGTCTC 1 cut(s) 100
BsnI GGCC 2 cut(s) 78, 170
Bsp1286I GDGCHC 2 cut(s) 231, 357
Bsp143I GATC 2 cut(s) 259, 295
BspACI CCGC 1 cut(s) 221
BspANI GGCC 2 cut(s) 78, 170
BspCNI CTCAG 2 cut(s) 136, 175
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 354
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 2 cut(s) 165, 171
BssMI GATC 2 cut(s) 259, 295
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 122, 373
Bst6I CTCTTC 3 cut(s) 303, 309, 315
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 2 cut(s) 144, 183
BstF5I GGATG 3 cut(s) 181, 229, 452
BstKTI GATC 2 cut(s) 262, 298
BstMAI GTCTC 2 cut(s) 100, 434
BstMBI GATC 2 cut(s) 259, 295
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 3 cut(s) 124, 127, 204
BstV2I GAAGAC 1 cut(s) 324
BsuRI GGCC 2 cut(s) 78, 170
BtsCI GGATG 3 cut(s) 181, 229, 452
BtsIMutI CAGTG 2 cut(s) 127, 223
Cac8I GCNNGC 1 cut(s) 428
CciI TCATGA 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 76
CviAII CATG 6 cut(s) 30, 40, 52, 189, 263, 299
CviJI RGCY 9 cut(s) 78, 83, 137, 170, 195, 206, 229, 361, 430
CviKI_1 RGCY 9 cut(s) 78, 83, 137, 170, 195, 206, 229, 361, 430
DdeI CTNAG 2 cut(s) 144, 183
DpnI GATC 2 cut(s) 261, 297
DpnII GATC 2 cut(s) 259, 295
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 3 cut(s) 303, 309, 315
EarI CTCTTC 3 cut(s) 303, 309, 315
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 153, 318
EcoICRI GAGCTC 1 cut(s) 229
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 6 cut(s) 33, 43, 55, 192, 266, 302
FaiI YATR 8 cut(s) 31, 41, 53, 190, 198, 264, 288, 300
FatI CATG 6 cut(s) 29, 39, 51, 188, 262, 298
FbaI TGATCA 2 cut(s) 259, 295
Fnu4HI GCNGC 3 cut(s) 138, 141, 193
FokI GGATG 3 cut(s) 188, 236, 439
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 138, 141, 193
GluI GCNGC 3 cut(s) 138, 141, 193
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 199
HaeIII GGCC 2 cut(s) 78, 170
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 6 cut(s) 33, 43, 55, 192, 266, 302
HinfI GANTC 5 cut(s) 13, 128, 185, 200, 383
HphI GGTGA 2 cut(s) 73, 254
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 133, 282, 345
Hpy188III TCNNGA 3 cut(s) 272, 299, 456
Hpy8I GTNNAC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 122, 373
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 192
HpyF3I CTNAG 2 cut(s) 144, 183
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 6 cut(s) 33, 43, 55, 192, 266, 302
Ksp22I TGATCA 2 cut(s) 259, 295
Kzo9I GATC 2 cut(s) 259, 295
LpnPI CCDG 3 cut(s) 59, 229, 371
Lsp1109I GCAGC 3 cut(s) 124, 127, 204
LweI GCATC 1 cut(s) 169
MaeII ACGT 1 cut(s) 93
MalI GATC 2 cut(s) 261, 297
MboI GATC 2 cut(s) 259, 295
MboII GAAGA 7 cut(s) 79, 257, 266, 320, 324, 326, 332
MhlI GDGCHC 2 cut(s) 231, 357
MlyI GAGTC 3 cut(s) 7, 194, 194
MnlI CCTC 9 cut(s) 109, 139, 166, 295, 298, 304, 310, 316, 406
MspA1I CMGCKG 1 cut(s) 361
NdeII GATC 2 cut(s) 259, 295
NlaIII CATG 6 cut(s) 33, 43, 55, 192, 266, 302
NlaIV GGNNCC 1 cut(s) 356
NmeAIII GCCGAG 2 cut(s) 182, 196
PagI TCATGA 1 cut(s) 298
PfeI GAWTC 2 cut(s) 128, 383
PkrI GCNGC 3 cut(s) 139, 142, 194
PleI GAGTC 3 cut(s) 7, 193, 194
PpsI GAGTC 3 cut(s) 7, 193, 194
Psp124BI GAGCTC 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 361
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 3 cut(s) 138, 141, 193
Sau3AI GATC 2 cut(s) 259, 295
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 3 cut(s) 7, 194, 194
SduI GDGCHC 2 cut(s) 231, 357
SfaNI GCATC 1 cut(s) 169
SsiI CCGC 1 cut(s) 221
SstI GAGCTC 1 cut(s) 231
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 122, 373
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 271
TfiI GAWTC 2 cut(s) 128, 383
TscAI CASTG 2 cut(s) 127, 223
TseI GCWGC 3 cut(s) 137, 140, 192
TspDTI ATGAA 3 cut(s) 18, 80, 267
TspRI CASTG 2 cut(s) 127, 223
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.