FvH4_2g24610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012026
Physical Location & Seq
Reverse (-)
20037662 .. 20038093
432 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24610.t1

Sequence Viewer

Length: 432 bp
ATGGAGAGAAATAACATGGAGTTGGTGATGATGAGGAAGCAGACCCAAGCTAATGTGGACGTCTCTCCTTTCTTGCTCTTTGAGGATAGTGGGGATTCTGAAGCTGCTTCTGAGGTTGTTTCTGATGTTCTCATGGCTGAGGATGATGCTGAGTCGTGCAGCTGGGACTCAGCTGATGTTTCCAGTGCTGATGAGCTCATCGTAATTGATGATGATGAAGATGAAGAAGATGATCGTGGTGTTCGAGAATATCGGAGTTACAGTGATGATCATGAGGAGGAAGGGGAAGAGGAAGAGGTAATGTCTTCAGATTACCAGAGATGGGGGCACCAGCTGAAATCAACTGTTTCTGTCGATTCAACAAAGGAGTTTGAGATGTTGAATGAGGTGGAAAAGAGCAAGCTATTTTGGGAGACTTGCTTAGCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.37

Weight (kDa)

4.05

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47950 AT2G47950 AT3G62990
fragaria_vesca FvH4_2g24610
prunus_persica Prupe.1G143800_v2.0.a1 Prupe.8G251300_v2.0.a1
pyrus_communis pycom13g15110 pycom16g14850
rosa_chinensis RchiOBHm_Chr6g0292431
rosa_laevigata RLG00000012025
rosa_multiflora Rmu_sc0012226.1_g000006 Rmu_sc0021303.1_g000002
rosa_roxburghii Rroxscaffold_7G00175070
rosa_rugosa Rorug06G0226600
rosa_samantha Rh6AG339900 Rh6BG347100 Rh6CG354000 Rh6DG339900
rosa_wichuraiana Rw6G029580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 327
AcuI CTGAAG 2 cut(s) 120, 291
AcyI GRCGYC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 2 cut(s) 360, 382
AluBI AGCT 7 cut(s) 50, 104, 162, 173, 196, 334, 403
AluI AGCT 7 cut(s) 50, 104, 162, 173, 196, 334, 403
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 67, 407
ApeKI GCWGC 2 cut(s) 104, 159
AsuHPI GGTGA 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 330
BanI GGYRCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 91, 171
BccI CCATC 1 cut(s) 315
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 67, 407
BisI GCNGC 2 cut(s) 105, 160
BlpI GCTNAGC 1 cut(s) 421
BlsI GCNGC 2 cut(s) 106, 161
BmiI GGNNCC 1 cut(s) 329
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 421
BsaHI GRCGYC 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 148, 425
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 4 cut(s) 102, 129, 141, 183
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 2 cut(s) 91, 171
BseYI CCCAGC 1 cut(s) 162
BsgI GTGCAG 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 198
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 67, 407
BsmBI CGTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 198, 330
Bsp143I GATC 2 cut(s) 232, 268
Bsp1720I GCTNAGC 1 cut(s) 421
BspCNI CTCAG 4 cut(s) 103, 130, 142, 182
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 327
BsrI ACTGG 1 cut(s) 183
BssMI GATC 2 cut(s) 232, 268
BssNI GRCGYC 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 263, 346
Bst6I CTCTTC 2 cut(s) 282, 288
BstACI GRCGYC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 5 cut(s) 111, 138, 150, 169, 421
BstF5I GGATG 2 cut(s) 148, 425
BstKTI GATC 2 cut(s) 235, 271
BstMAI GTCTC 2 cut(s) 67, 407
BstMBI GATC 2 cut(s) 232, 268
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 91, 171
BstV2I GAAGAC 1 cut(s) 297
BtsCI GGATG 2 cut(s) 148, 425
BtsIMutI CAGTG 2 cut(s) 190, 268
Cac8I GCNNGC 1 cut(s) 401
CciI TCATGA 1 cut(s) 271
CviAII CATG 3 cut(s) 16, 133, 272
CviJI RGCY 8 cut(s) 50, 104, 137, 162, 173, 196, 334, 403
CviKI_1 RGCY 8 cut(s) 50, 104, 137, 162, 173, 196, 334, 403
DdeI CTNAG 5 cut(s) 111, 138, 150, 169, 421
DpnI GATC 2 cut(s) 234, 270
DpnII GATC 2 cut(s) 232, 268
Eam1104I CTCTTC 2 cut(s) 282, 288
EarI CTCTTC 2 cut(s) 282, 288
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 2 cut(s) 120, 291
EcoICRI GAGCTC 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 3 cut(s) 19, 136, 275
FaiI YATR 3 cut(s) 17, 134, 273
FaqI GGGAC 1 cut(s) 179
FatI CATG 3 cut(s) 15, 132, 271
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 105, 160
FokI GGATG 2 cut(s) 155, 412
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 105, 160
GluI GCNGC 2 cut(s) 105, 160
GsaI CCCAGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 3 cut(s) 19, 136, 275
HinfI GANTC 4 cut(s) 95, 152, 167, 356
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 5 cut(s) 100, 112, 124, 255, 310
Hpy188III TCNNGA 2 cut(s) 245, 272
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 2 cut(s) 263, 346
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 159
HpyF3I CTNAG 5 cut(s) 111, 138, 150, 169, 421
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 3 cut(s) 19, 136, 275
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 2 cut(s) 232, 268
LpnPI CCDG 4 cut(s) 148, 196, 329, 344
Lsp1109I GCAGC 2 cut(s) 91, 171
LweI GCATC 1 cut(s) 136
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 257
MalI GATC 2 cut(s) 234, 270
MboI GATC 2 cut(s) 232, 268
MboII GAAGA 6 cut(s) 230, 236, 239, 297, 299, 305
MhlI GDGCHC 2 cut(s) 198, 330
MluCI AATT 1 cut(s) 204
MlyI GAGTC 2 cut(s) 161, 161
MnlI CCTC 9 cut(s) 27, 76, 106, 133, 268, 271, 283, 289, 379
MspA1I CMGCKG 3 cut(s) 162, 173, 334
NdeII GATC 2 cut(s) 232, 268
NlaIII CATG 3 cut(s) 19, 136, 275
NlaIV GGNNCC 1 cut(s) 329
PagI TCATGA 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PfeI GAWTC 2 cut(s) 95, 356
PkrI GCNGC 2 cut(s) 106, 161
PleI GAGTC 2 cut(s) 160, 161
PpsI GAGTC 2 cut(s) 160, 161
Psp124BI GAGCTC 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 329
PvuII CAGCTG 3 cut(s) 162, 173, 334
SacI GAGCTC 1 cut(s) 198
SatI GCNGC 2 cut(s) 105, 160
Sau3AI GATC 2 cut(s) 232, 268
SchI GAGTC 2 cut(s) 161, 161
SduI GDGCHC 2 cut(s) 198, 330
SfaNI GCATC 1 cut(s) 136
Sse9I AATT 1 cut(s) 204
SstI GAGCTC 1 cut(s) 198
TaaI ACNGT 2 cut(s) 263, 346
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 244, 354
TasI AATT 1 cut(s) 204
TfiI GAWTC 2 cut(s) 95, 356
TscAI CASTG 2 cut(s) 190, 268
TseI GCWGC 2 cut(s) 104, 159
TspDTI ATGAA 2 cut(s) 231, 237
TspRI CASTG 2 cut(s) 190, 268
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.