Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012026

Physical Location & Seq

Genomic Coordinates Forward (+)

14730361 .. 14730810

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00175070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACTCAATCCTACTACTCATGCTTTGGCATGGAGAGAAACATGGAGTTGGTGATGAAGAAGCAGGGCCAAGCTAATGTGGATGTCTCTCCTTTCTTGCTCTTTGAGGACAGTGGGGATTCTGAAGCTGCTGCTGAGGTTGTTTTTGATGTTCCCTTGGCCGAGGATGATGCTGAGTCATGCAGCTATGACTCAGCTGATATCTCCAGTGCGGATGAGCTCATCTTAAATGGTGAAGATGATGAAGATGATCATGGTGTTGGAGAATATCGGAGTTATGTTGATGATCATGAGGAGGAAGAGGAAGAGGAAGAGGTAATGTCTTCAGTTTATCAGAGATGGGGGCACCAGCTGAAATCAACTGTTTCTGTTGATTCGACAAAGGAGTTTGAGATGTTGAATGAGGTGGAAAAGAGCAAGCTATTTTGGGAGACTTGCTTGGCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.89

Weight (kDa)

4.05

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47950 AT2G47950 AT3G62990
fragaria_vesca	FvH4_2g24610
prunus_persica	Prupe.1G143800_v2.0.a1 Prupe.8G251300_v2.0.a1
pyrus_communis	pycom13g15110 pycom16g14850
rosa_chinensis	RchiOBHm_Chr6g0292431
rosa_laevigata	RLG00000012025
rosa_multiflora	Rmu_sc0012226.1_g000006 Rmu_sc0021303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175070
rosa_rugosa	Rorug06G0226600
rosa_samantha	Rh6AG339900 Rh6BG347100 Rh6CG354000 Rh6DG339900
rosa_wichuraiana	Rw6G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AciI	CCGC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	2 cut(s)	144, 309
AgsI	TTSAA	1 cut(s)	400
AluBI	AGCT	7 cut(s)	74, 128, 186, 197, 220, 352, 421
AluI	AGCT	7 cut(s)	74, 128, 186, 197, 220, 352, 421
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	91, 425
AoxI	GGCC	2 cut(s)	67, 159
ApeKI	GCWGC	3 cut(s)	128, 131, 183
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	64, 245
BaeGI	GKGCMC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	222
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	115, 118, 195
BccI	CCATC	1 cut(s)	333
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BclI	TGATCA	2 cut(s)	250, 286
BcoDI	GTCTC	2 cut(s)	91, 425
BisI	GCNGC	3 cut(s)	129, 132, 184
BlsI	GCNGC	3 cut(s)	130, 133, 185
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	347
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	156, 162
Bse1I	ACTGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	156, 162
BseGI	GGATG	4 cut(s)	88, 172, 220, 443
BseMII	CTCAG	3 cut(s)	126, 165, 207
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	115, 118, 195
BshFI	GGCC	2 cut(s)	69, 161
BshNI	GGYRCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	222
BsmAI	GTCTC	2 cut(s)	91, 425
BsnI	GGCC	2 cut(s)	69, 161
Bsp1286I	GDGCHC	2 cut(s)	222, 348
Bsp143I	GATC	2 cut(s)	250, 286
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	2 cut(s)	69, 161
BspCNI	CTCAG	3 cut(s)	127, 166, 206
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	156, 162
BssMI	GATC	2 cut(s)	250, 286
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	113, 364
Bst6I	CTCTTC	3 cut(s)	294, 300, 306
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	3 cut(s)	135, 174, 193
BstF5I	GGATG	4 cut(s)	88, 172, 220, 443
BstKTI	GATC	2 cut(s)	253, 289
BstMAI	GTCTC	2 cut(s)	91, 425
BstMBI	GATC	2 cut(s)	250, 286
BstSLI	GKGCMC	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	115, 118, 195
BstV2I	GAAGAC	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	69, 161
BtsCI	GGATG	4 cut(s)	88, 172, 220, 443
BtsIMutI	CAGTG	2 cut(s)	118, 214
Cac8I	GCNNGC	1 cut(s)	419
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	67
CviAII	CATG	6 cut(s)	21, 31, 43, 180, 254, 290
CviJI	RGCY	9 cut(s)	69, 74, 128, 161, 186, 197, 220, 352, 421
CviKI_1	RGCY	9 cut(s)	69, 74, 128, 161, 186, 197, 220, 352, 421
DdeI	CTNAG	3 cut(s)	135, 174, 193
DpnI	GATC	2 cut(s)	252, 288
DpnII	GATC	2 cut(s)	250, 286
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	3 cut(s)	294, 300, 306
EarI	CTCTTC	3 cut(s)	294, 300, 306
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	144, 309
EcoICRI	GAGCTC	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	6 cut(s)	24, 34, 46, 183, 257, 293
FaiI	YATR	8 cut(s)	22, 32, 44, 181, 189, 255, 279, 291
FatI	CATG	6 cut(s)	20, 30, 42, 179, 253, 289
FbaI	TGATCA	2 cut(s)	250, 286
Fnu4HI	GCNGC	3 cut(s)	129, 132, 184
FokI	GGATG	4 cut(s)	95, 179, 227, 430
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	129, 132, 184
GluI	GCNGC	3 cut(s)	129, 132, 184
GsuI	CTGGAG	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	69, 161
Hin1II	CATG	6 cut(s)	24, 34, 46, 183, 257, 293
HinfI	GANTC	5 cut(s)	4, 119, 176, 191, 374
HphI	GGTGA	2 cut(s)	64, 245
Hpy188I	TCNGA	3 cut(s)	124, 273, 336
Hpy188III	TCNNGA	2 cut(s)	290, 447
HpyCH4III	ACNGT	2 cut(s)	113, 364
HpyCH4V	TGCA	1 cut(s)	183
HpyF3I	CTNAG	3 cut(s)	135, 174, 193
Hsp92II	CATG	6 cut(s)	24, 34, 46, 183, 257, 293
Ksp22I	TGATCA	2 cut(s)	250, 286
Kzo9I	GATC	2 cut(s)	250, 286
LpnPI	CCDG	3 cut(s)	50, 220, 362
Lsp1109I	GCAGC	3 cut(s)	115, 118, 195
LweI	GCATC	1 cut(s)	160
MalI	GATC	2 cut(s)	252, 288
MboI	GATC	2 cut(s)	250, 286
MboII	GAAGA	7 cut(s)	70, 248, 257, 311, 315, 317, 323
MhlI	GDGCHC	2 cut(s)	222, 348
MlyI	GAGTC	2 cut(s)	185, 185
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	9 cut(s)	100, 130, 157, 286, 289, 295, 301, 307, 397
MseI	TTAA	1 cut(s)	227
MspA1I	CMGCKG	2 cut(s)	197, 352
NdeII	GATC	2 cut(s)	250, 286
NlaIII	CATG	6 cut(s)	24, 34, 46, 183, 257, 293
NlaIV	GGNNCC	1 cut(s)	347
NmeAIII	GCCGAG	1 cut(s)	187
PagI	TCATGA	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	119, 374
PkrI	GCNGC	3 cut(s)	130, 133, 185
PleI	GAGTC	2 cut(s)	184, 185
PpsI	GAGTC	2 cut(s)	184, 185
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	67
PvuII	CAGCTG	2 cut(s)	197, 352
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	3 cut(s)	129, 132, 184
Sau3AI	GATC	2 cut(s)	250, 286
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	2 cut(s)	185, 185
SduI	GDGCHC	2 cut(s)	222, 348
SfaNI	GCATC	1 cut(s)	160
SsiI	CCGC	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	113, 364
TaqI	TCGA	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	119, 374
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	2 cut(s)	118, 214
TseI	GCWGC	3 cut(s)	128, 131, 183
TspDTI	ATGAA	2 cut(s)	71, 258
TspRI	CASTG	2 cut(s)	118, 214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.