Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012026

Physical Location & Seq

Genomic Coordinates Reverse (-)

53954270 .. 53955655

Gene Structure 1386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG339900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCTGGAAATGACTCAATCCTACTATTCATGCTTTGGCATGGAGAGGAACATGGAGTTGGTGATGAAGAAGCAGGGCCAAGCTAATGTGGATGTCTCTCCTTTCTTGCTCTTTGAGGACAGTGGGGATTCTGAAGCTGCTGCTGAGGTTGTTTTTGATGTTCCCTTGGCCGAGGATGATGCTGAGTCATGCAGCTATGACTCAGCTGATATCTCCAGTGCGGATGAGCTCATCCTAAATGGTGAAGATGATGAAGATGATCATGGTGTTCGAGAATATCGGAGTTATGTTGACGATCATGAGGAGGAAGAGGAAGAGGAAGAGGTAATGTCTTCAGTTTATCAGAGATGCGGCCACCAGCTGAAATCAACTGTTTCTGTTGATTCAACAAAGGAGTTTGAGATGTTGAATGAGGTGGAAAAGAGCAAGTTATTTTGGGAGACTTGCTTGGCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.28

Weight (kDa)

4.05

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47950 AT2G47950 AT3G62990
fragaria_vesca	FvH4_2g24610
prunus_persica	Prupe.1G143800_v2.0.a1 Prupe.8G251300_v2.0.a1
pyrus_communis	pycom13g15110 pycom16g14850
rosa_chinensis	RchiOBHm_Chr6g0292431
rosa_laevigata	RLG00000012025
rosa_multiflora	Rmu_sc0012226.1_g000006 Rmu_sc0021303.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175070
rosa_rugosa	Rorug06G0226600
rosa_samantha	Rh6AG339900 Rh6BG347100 Rh6CG354000 Rh6DG339900
rosa_wichuraiana	Rw6G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	221, 351
AcoI	YGGCCR	2 cut(s)	168, 352
AcuI	CTGAAG	2 cut(s)	153, 318
AgsI	TTSAA	2 cut(s)	387, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	6 cut(s)	83, 137, 195, 206, 229, 361
AluI	AGCT	6 cut(s)	83, 137, 195, 206, 229, 361
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	100, 434
AoxI	GGCC	3 cut(s)	76, 168, 352
ApeKI	GCWGC	3 cut(s)	137, 140, 192
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	73, 254
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	124, 127, 204
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	100, 434
BisI	GCNGC	4 cut(s)	138, 141, 193, 352
BlsI	GCNGC	4 cut(s)	139, 142, 194, 353
BmgT120I	GGNCC	1 cut(s)	76
BmsI	GCATC	2 cut(s)	169, 338
BpiI	GAAGAC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	165, 171
Bse1I	ACTGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	165, 171
BseGI	GGATG	5 cut(s)	97, 181, 229, 231, 452
BseMII	CTCAG	3 cut(s)	135, 174, 216
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	124, 127, 204
BshFI	GGCC	3 cut(s)	78, 170, 354
BsiHKAI	GWGCWC	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	100, 434
BsnI	GGCC	3 cut(s)	78, 170, 354
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	259, 295
BspACI	CCGC	2 cut(s)	221, 351
BspANI	GGCC	3 cut(s)	78, 170, 354
BspCNI	CTCAG	3 cut(s)	136, 175, 215
BspHI	TCATGA	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	165, 171
BssMI	GATC	2 cut(s)	259, 295
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	122, 373
Bst6I	CTCTTC	3 cut(s)	303, 309, 315
BstDEI	CTNAG	3 cut(s)	144, 183, 202
BstF5I	GGATG	5 cut(s)	97, 181, 229, 231, 452
BstKTI	GATC	2 cut(s)	262, 298
BstMAI	GTCTC	2 cut(s)	100, 434
BstMBI	GATC	2 cut(s)	259, 295
BstV1I	GCAGC	3 cut(s)	124, 127, 204
BstV2I	GAAGAC	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	78, 170, 354
BtsCI	GGATG	5 cut(s)	97, 181, 229, 231, 452
BtsIMutI	CAGTG	2 cut(s)	127, 223
CciI	TCATGA	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	76
CviAII	CATG	6 cut(s)	30, 40, 52, 189, 263, 299
CviJI	RGCY	9 cut(s)	78, 83, 137, 170, 195, 206, 229, 354, 361
CviKI_1	RGCY	9 cut(s)	78, 83, 137, 170, 195, 206, 229, 354, 361
DdeI	CTNAG	3 cut(s)	144, 183, 202
DpnI	GATC	2 cut(s)	261, 297
DpnII	GATC	2 cut(s)	259, 295
EaeI	YGGCCR	2 cut(s)	168, 352
Eam1104I	CTCTTC	3 cut(s)	303, 309, 315
EarI	CTCTTC	3 cut(s)	303, 309, 315
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	153, 318
EcoICRI	GAGCTC	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	6 cut(s)	33, 43, 55, 192, 266, 302
FaiI	YATR	8 cut(s)	31, 41, 53, 190, 198, 264, 288, 300
FatI	CATG	6 cut(s)	29, 39, 51, 188, 262, 298
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	138, 141, 193, 352
FokI	GGATG	5 cut(s)	104, 188, 218, 236, 439
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	138, 141, 193, 352
GluI	GCNGC	4 cut(s)	138, 141, 193, 352
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	3 cut(s)	78, 170, 354
Hin1II	CATG	6 cut(s)	33, 43, 55, 192, 266, 302
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	5 cut(s)	13, 128, 185, 200, 383
HphI	GGTGA	2 cut(s)	73, 254
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	133, 282, 345
Hpy188III	TCNNGA	3 cut(s)	272, 299, 456
Hpy8I	GTNNAC	1 cut(s)	292
HpyCH4III	ACNGT	2 cut(s)	122, 373
HpyCH4V	TGCA	1 cut(s)	192
HpyF3I	CTNAG	3 cut(s)	144, 183, 202
Hsp92II	CATG	6 cut(s)	33, 43, 55, 192, 266, 302
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	259, 295
LpnPI	CCDG	3 cut(s)	59, 229, 371
Lsp1109I	GCAGC	3 cut(s)	124, 127, 204
LweI	GCATC	2 cut(s)	169, 338
MalI	GATC	2 cut(s)	261, 297
MboI	GATC	2 cut(s)	259, 295
MboII	GAAGA	7 cut(s)	79, 257, 266, 320, 324, 326, 332
MhlI	GDGCHC	1 cut(s)	231
MlyI	GAGTC	3 cut(s)	7, 194, 194
MspA1I	CMGCKG	2 cut(s)	206, 361
NdeII	GATC	2 cut(s)	259, 295
NlaIII	CATG	6 cut(s)	33, 43, 55, 192, 266, 302
NmeAIII	GCCGAG	1 cut(s)	196
PagI	TCATGA	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	128, 383
PkrI	GCNGC	4 cut(s)	139, 142, 194, 353
PleI	GAGTC	3 cut(s)	7, 193, 194
PpsI	GAGTC	3 cut(s)	7, 193, 194
Psp124BI	GAGCTC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	76
PvuII	CAGCTG	2 cut(s)	206, 361
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	4 cut(s)	138, 141, 193, 352
Sau3AI	GATC	2 cut(s)	259, 295
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	3 cut(s)	7, 194, 194
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	9 cut(s)	85, 139, 150, 197, 208, 231, 327, 363, 417
SfaNI	GCATC	2 cut(s)	169, 338
SsiI	CCGC	2 cut(s)	221, 351
SstI	GAGCTC	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	122, 373
TaqI	TCGA	1 cut(s)	271
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	2 cut(s)	128, 383
TscAI	CASTG	2 cut(s)	127, 223
TseI	GCWGC	3 cut(s)	137, 140, 192
TspDTI	ATGAA	3 cut(s)	18, 80, 267
TspRI	CASTG	2 cut(s)	127, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.