RLG00000012025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012026
Physical Location & Seq
Forward (+)
14642132 .. 14643004
873 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012025

Sequence Viewer

Length: 513 bp
ATGGAAATTGGGTGCCAGACGCGTGGAGAAGCAATTCCTTGCCTTAAAAAGAATTCAATGCTGGAAATGACTCAATCCTACTATTCATGCTTTGGCATGGAGAGAAACATGGAGTTGGTGATGAAGAAGCAGGGCCAAGCTAATGTGGATGTCTCTCCTTTCTTGCTCTTTGAGGACAGTGGGGATTCTGAAGCTGCTGCTGAGGTTGTTTTTGATGTTCCCATGGCCGAGGATGATGCTGAGTCATGCAGCTATGACTCAGCTGATATCTCCAGTGCGGATGAGCTCATCGTAAATGGTGAAGATGATCATGGTGTTCGAGAATATCGGAGTTATGTTGATGATCATGAGGAGGAAGAGGAAGAGGAAGAGGAAGAGGTAATGTCTTCAGTTTATCAGAGATGGGGGCACCAGCTGAAATCAACTGTTTCTGTTGATTCGACAAAGGAGTTTGAGATGTTGAATGAGGTGGAAAAGAGCAAGCTATTTTGGGAGACTTGCTTGGCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.32

Weight (kDa)

4.11

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47950 AT2G47950 AT3G62990
fragaria_vesca FvH4_2g24610
prunus_persica Prupe.1G143800_v2.0.a1 Prupe.8G251300_v2.0.a1
pyrus_communis pycom13g15110 pycom16g14850
rosa_chinensis RchiOBHm_Chr6g0292431
rosa_laevigata RLG00000012025
rosa_multiflora Rmu_sc0012226.1_g000006 Rmu_sc0021303.1_g000002
rosa_roxburghii Rroxscaffold_7G00175070
rosa_rugosa Rorug06G0226600
rosa_samantha Rh6AG339900 Rh6BG347100 Rh6CG354000 Rh6DG339900
rosa_wichuraiana Rw6G029580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 12, 408
AccII CGCG 1 cut(s) 22
AciI CCGC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 2 cut(s) 210, 372
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 2 cut(s) 57, 463
AluBI AGCT 7 cut(s) 140, 194, 252, 263, 286, 415, 484
AluI AGCT 7 cut(s) 140, 194, 252, 263, 286, 415, 484
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 157, 488
AoxI GGCC 2 cut(s) 133, 225
ApeKI GCWGC 3 cut(s) 194, 197, 249
ApoI RAATTY 1 cut(s) 52
Asp700I GAANNNNTTC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 130, 311
BaeGI GKGCMC 1 cut(s) 411
BanI GGYRCC 2 cut(s) 12, 408
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 181, 184, 261
BccI CCATC 1 cut(s) 396
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BclI TGATCA 2 cut(s) 307, 343
BcoDI GTCTC 2 cut(s) 157, 488
BisI GCNGC 3 cut(s) 195, 198, 250
BlsI GCNGC 3 cut(s) 196, 199, 251
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 2 cut(s) 14, 410
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 222, 228
Bse1I ACTGG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 222, 228
BseGI GGATG 4 cut(s) 154, 238, 286, 506
BseMII CTCAG 3 cut(s) 192, 231, 273
BseNI ACTGG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 3 cut(s) 181, 184, 261
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 135, 227
BshNI GGYRCC 2 cut(s) 12, 408
BsiHKAI GWGCWC 1 cut(s) 288
BsmAI GTCTC 2 cut(s) 157, 488
BsnI GGCC 2 cut(s) 135, 227
Bsp1286I GDGCHC 2 cut(s) 288, 411
Bsp143I GATC 2 cut(s) 307, 343
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 1 cut(s) 278
BspANI GGCC 2 cut(s) 135, 227
BspCNI CTCAG 3 cut(s) 193, 232, 272
BspFNI CGCG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 14, 410
BspT107I GGYRCC 2 cut(s) 12, 408
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 2 cut(s) 222, 228
BssMI GATC 2 cut(s) 307, 343
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 179, 427
Bst6I CTCTTC 4 cut(s) 351, 357, 363, 369
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 3 cut(s) 201, 240, 259
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 4 cut(s) 154, 238, 286, 506
BstFNI CGCG 1 cut(s) 22
BstKTI GATC 2 cut(s) 310, 346
BstMAI GTCTC 2 cut(s) 157, 488
BstMBI GATC 2 cut(s) 307, 343
BstSLI GKGCMC 1 cut(s) 411
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 3 cut(s) 181, 184, 261
BstV2I GAAGAC 1 cut(s) 378
BstXI CCANNNNNNTGG 1 cut(s) 23
BsuRI GGCC 2 cut(s) 135, 227
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 4 cut(s) 154, 238, 286, 506
BtsIMutI CAGTG 2 cut(s) 184, 280
Cac8I GCNNGC 1 cut(s) 482
CciI TCATGA 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 133
CseI GACGC 1 cut(s) 28
CviAII CATG 7 cut(s) 87, 97, 109, 223, 246, 311, 347
CviJI RGCY 9 cut(s) 135, 140, 194, 227, 252, 263, 286, 415, 484
CviKI_1 RGCY 9 cut(s) 135, 140, 194, 227, 252, 263, 286, 415, 484
DdeI CTNAG 3 cut(s) 201, 240, 259
DpnI GATC 2 cut(s) 309, 345
DpnII GATC 2 cut(s) 307, 343
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 4 cut(s) 351, 357, 363, 369
EarI CTCTTC 4 cut(s) 351, 357, 363, 369
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 210, 372
EcoICRI GAGCTC 1 cut(s) 286
EcoRI GAATTC 1 cut(s) 52
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 7 cut(s) 90, 100, 112, 226, 249, 314, 350
FaiI YATR 9 cut(s) 88, 98, 110, 224, 247, 255, 312, 336, 348
FatI CATG 7 cut(s) 86, 96, 108, 222, 245, 310, 346
FbaI TGATCA 2 cut(s) 307, 343
Fnu4HI GCNGC 3 cut(s) 195, 198, 250
FokI GGATG 4 cut(s) 161, 245, 293, 493
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 3 cut(s) 195, 198, 250
GluI GCNGC 3 cut(s) 195, 198, 250
GsuI CTGGAG 1 cut(s) 256
HaeIII GGCC 2 cut(s) 135, 227
HgaI GACGC 1 cut(s) 28
Hin1II CATG 7 cut(s) 90, 100, 112, 226, 249, 314, 350
HinfI GANTC 5 cut(s) 70, 185, 242, 257, 437
HphI GGTGA 2 cut(s) 130, 311
Hpy188I TCNGA 3 cut(s) 190, 330, 399
Hpy188III TCNNGA 3 cut(s) 320, 347, 510
HpyCH4III ACNGT 2 cut(s) 179, 427
HpyCH4V TGCA 1 cut(s) 249
HpyF3I CTNAG 3 cut(s) 201, 240, 259
Hsp92II CATG 7 cut(s) 90, 100, 112, 226, 249, 314, 350
Ksp22I TGATCA 2 cut(s) 307, 343
Kzo9I GATC 2 cut(s) 307, 343
LpnPI CCDG 5 cut(s) 29, 47, 116, 286, 425
Lsp1109I GCAGC 3 cut(s) 181, 184, 261
LweI GCATC 1 cut(s) 226
MalI GATC 2 cut(s) 309, 345
MboI GATC 2 cut(s) 307, 343
MboII GAAGA 7 cut(s) 136, 314, 368, 374, 378, 380, 386
MhlI GDGCHC 2 cut(s) 288, 411
MluCI AATT 3 cut(s) 6, 33, 52
MluI ACGCGT 1 cut(s) 20
MlyI GAGTC 3 cut(s) 64, 251, 251
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 2 cut(s) 263, 415
MvnI CGCG 1 cut(s) 22
NcoI CCATGG 1 cut(s) 222
NdeII GATC 2 cut(s) 307, 343
NlaIII CATG 7 cut(s) 90, 100, 112, 226, 249, 314, 350
NlaIV GGNNCC 2 cut(s) 14, 410
NmeAIII GCCGAG 1 cut(s) 253
PagI TCATGA 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 185, 437
PkrI GCNGC 3 cut(s) 196, 199, 251
PleI GAGTC 3 cut(s) 64, 250, 251
PpsI GAGTC 3 cut(s) 64, 250, 251
Psp124BI GAGCTC 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 14, 410
PspPI GGNCC 1 cut(s) 133
PvuII CAGCTG 2 cut(s) 263, 415
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 3 cut(s) 195, 198, 250
Sau3AI GATC 2 cut(s) 307, 343
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 3 cut(s) 64, 251, 251
SduI GDGCHC 2 cut(s) 288, 411
SfaNI GCATC 1 cut(s) 226
Sse9I AATT 3 cut(s) 6, 33, 52
SsiI CCGC 1 cut(s) 278
SstI GAGCTC 1 cut(s) 288
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 179, 427
TaqI TCGA 2 cut(s) 319, 440
TasI AATT 3 cut(s) 6, 33, 52
TfiI GAWTC 2 cut(s) 185, 437
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 184, 280
TseI GCWGC 3 cut(s) 194, 197, 249
TspDTI ATGAA 2 cut(s) 75, 137
TspRI CASTG 2 cut(s) 184, 280
XapI RAATTY 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.