Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Reverse (-)

19682456 .. 19686056

Gene Structure 3601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G48130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGGGTATAGAAGAAGCTACGCAATCACATTTGTAGCCCTTGTGGCGGCTCTATGGAGCGTAACAAAAGCACAGCCGAGCAGTTCATGCGTGAGCACACTGACCACTCTCTCTCCGTGCCTCAGCTACATCACCGGAAACTCAACCACTCCCTCACAGCCTTGCTGTTCTCGGCTCGACTCTGTCATCAAATCTTCGCCGCAGTGCATCTGCTCAGCCGTCAACAGTCCGATCCCAAACATCGGCCTTAACATTAACCGCACACAGGCCTTGCAGCTCCCCAATGCCTGCAACATTCAGACGCCTCCCCTCACACAATGCAACGCGGCCACTGGTCCAACAGCACAGCCTCCCGCACCCTCACCGACGGAAAAGACCCCAGATGTGACACTAACCCCAACCTCATTGCCGGGTGCTCGTTCAGGAGTTGGAGGTGGTTCCAAGACAGTTCCCTCCGTTGGTACCGGCTCGTCCAGCAGGAATGTTGACCCCTTGCCGCTGCATTTTCTTATGTTTGCTGTATTGGTGGTCTGCACTTCTTCTTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

183

Amino Acids

18.85

Weight (kDa)

8.98

Isoelectric Point (pI)

65.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	17 - 107	3.1e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	30 - 107	3.4e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	461
AccII	CGCG	1 cut(s)	326
AciI	CCGC	6 cut(s)	47, 200, 259, 326, 354, 497
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	4 cut(s)	46, 242, 265, 458
AluBI	AGCT	3 cut(s)	18, 126, 277
AluI	AGCT	3 cut(s)	18, 126, 277
Alw21I	GWGCWC	2 cut(s)	98, 418
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	3 cut(s)	244, 267, 327
ApeKI	GCWGC	2 cut(s)	274, 499
Asp718I	GGTACC	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	124, 354
AvaII	GGWCC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	461
Bbv12I	GWGCWC	2 cut(s)	98, 418
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	286, 486
BceAI	ACGGC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	411
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	6 cut(s)	48, 200, 275, 327, 497, 500
BlpI	GCTNAGC	1 cut(s)	214
BlsI	GCNGC	6 cut(s)	49, 201, 276, 328, 498, 501
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	439, 463
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 242, 265, 458
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	4 cut(s)	46, 242, 265, 458
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	2 cut(s)	136, 228
BseNI	ACTGG	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	286, 486
BsgI	GTGCAG	1 cut(s)	517
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	3 cut(s)	246, 269, 329
BshNI	GGYRCC	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	98, 418
BsiSI	CCGG	3 cut(s)	135, 410, 465
BslI	CCNNNNNNNGG	4 cut(s)	46, 242, 265, 458
BsnI	GGCC	3 cut(s)	246, 269, 329
Bsp1286I	GDGCHC	2 cut(s)	98, 418
Bsp143I	GATC	1 cut(s)	231
Bsp1720I	GCTNAGC	1 cut(s)	214
BspACI	CCGC	6 cut(s)	47, 200, 259, 326, 354, 497
BspANI	GGCC	3 cut(s)	246, 269, 329
BspCNI	CTCAG	2 cut(s)	135, 227
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	2 cut(s)	439, 463
BspPI	GGATC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	464
BssMI	GATC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	227, 448
BstACI	GRCGYC	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	2 cut(s)	122, 214
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 87, 474
BstSCI	CCNGG	1 cut(s)	409
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	286, 486
BsuRI	GGCC	3 cut(s)	246, 269, 329
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	98, 209, 330
Cac8I	GCNNGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	335
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	1 cut(s)	87
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	2 cut(s)	122, 214
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	335
FaeI	CATG	1 cut(s)	90
FaiI	YATR	4 cut(s)	9, 55, 88, 512
FatI	CATG	1 cut(s)	86
FauI	CCCGC	1 cut(s)	361
Fnu4HI	GCNGC	6 cut(s)	48, 200, 275, 327, 497, 500
Fsp4HI	GCNGC	6 cut(s)	48, 200, 275, 327, 497, 500
GluI	GCNGC	6 cut(s)	48, 200, 275, 327, 497, 500
HaeIII	GGCC	3 cut(s)	246, 269, 329
HapII	CCGG	3 cut(s)	135, 410, 465
HgaI	GACGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	1 cut(s)	90
HincII	GTYRAC	2 cut(s)	223, 487
HindII	GTYRAC	2 cut(s)	223, 487
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	3 cut(s)	135, 410, 465
HphI	GGTGA	2 cut(s)	124, 354
Hpy166II	GTNNAC	2 cut(s)	223, 487
Hpy188I	TCNGA	2 cut(s)	231, 300
Hpy188III	TCNNGA	1 cut(s)	423
Hpy8I	GTNNAC	2 cut(s)	223, 487
Hpy99I	CGWCG	1 cut(s)	370
HpyCH4III	ACNGT	2 cut(s)	227, 448
HpyCH4V	TGCA	6 cut(s)	207, 274, 291, 321, 502, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 87, 474
HpyF3I	CTNAG	2 cut(s)	122, 214
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	1 cut(s)	90
KpnI	GGTACC	1 cut(s)	465
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	57, 282
Lsp1109I	GCAGC	2 cut(s)	286, 486
LweI	GCATC	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	61, 385
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	3 cut(s)	24, 186, 531
MhlI	GDGCHC	2 cut(s)	98, 418
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	362, 409
MnlI	CCTC	9 cut(s)	131, 163, 315, 320, 360, 370, 412, 425, 463
MseI	TTAA	3 cut(s)	249, 255, 550
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	3 cut(s)	135, 410, 465
MspR9I	CCNGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	44, 87, 474
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	2 cut(s)	439, 463
NmeAIII	GCCGAG	2 cut(s)	102, 151
NmuCI	GTSAC	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	269
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	6 cut(s)	49, 201, 276, 328, 498, 501
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	439, 463
PspPI	GGNCC	1 cut(s)	335
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	249, 255, 550
SatI	GCNGC	6 cut(s)	48, 200, 275, 327, 497, 500
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	98, 418
SetI	ASST	5 cut(s)	20, 128, 279, 404, 436
SfaNI	GCATC	1 cut(s)	216
SinI	GGWCC	1 cut(s)	335
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	6 cut(s)	47, 200, 259, 326, 354, 497
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	227, 448
TaqI	TCGA	1 cut(s)	177
TauI	GCSGC	4 cut(s)	50, 202, 329, 499
Tru1I	TTAA	3 cut(s)	249, 255, 550
Tru9I	TTAA	3 cut(s)	249, 255, 550
TscAI	CASTG	3 cut(s)	105, 209, 337
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	2 cut(s)	274, 499
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	3 cut(s)	105, 383, 445
TspRI	CASTG	3 cut(s)	105, 209, 337
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.