Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Forward (+)

40065736 .. 40066772

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1282000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTTCTAGCCCTGGTCCTTGGGTCCATGCTATTGGGTGGAGTCATGGCTCAGTTAAGCTGCACCAGCACACAATCACAAGCCTGGTTCCATGCCTCAACTTTCGTTACTGGAAACACATCAAACCCTTCATCTTCTTGCTGCTCACAGCTCTCTAATGTTGTCCAGTCATCACCTCAGTGCCTTTGCTCTTTGGTCAACGGTGCCAGCTCATTGGGCATCACCATAAACCAAACACTTGCTTTGTCATTGCCCAGGGCTTGCAAAGTGCAAACTCCTCCCCCTAGCCAATGTAAAGGTGCCAATGGACCTTCAACTTCATCATCAACTCCTCCAGCAAGTTCCCCAGCAGCTTCCTCCAATGAAACACCTTCAGAAGCTTCTACTCCTGAAGCGTCCATTTCGCCATTGGCCTCGGACATTCCTTCATCTTCAGGAGGAGGTTCGAAAACAGTCCCATCCACAAACGGTAACACATCCGACGGAAGCACCAGCAGAGCACCTCTTCATTTTGTGCTCTTTCTCGTTTTTGTTATGTCATGTGCTTCTTCGCTCGCCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

189

Amino Acids

18.79

Weight (kDa)

7.54

Isoelectric Point (pI)

59.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	13 - 98	3.9e-16	Probable lipid transfer
Tryp_alpha_amyl	PF00234	33 - 98	1.4e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	203, 299
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	3 cut(s)	357, 411, 417
AgsI	TTSAA	1 cut(s)	315
AjnI	CCWGG	3 cut(s)	12, 83, 254
AleI	CACNNNNGTG	1 cut(s)	178
AluBI	AGCT	5 cut(s)	60, 151, 210, 353, 380
AluI	AGCT	5 cut(s)	60, 151, 210, 353, 380
Alw21I	GWGCWC	2 cut(s)	502, 519
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	3 cut(s)	60, 141, 350
ApoI	RAATTY	1 cut(s)	560
AspS9I	GGNCC	3 cut(s)	16, 24, 308
AsuHPI	GGTGA	2 cut(s)	165, 214
AsuII	TTCGAA	1 cut(s)	446
AvaII	GGWCC	3 cut(s)	16, 24, 308
BanI	GGYRCC	2 cut(s)	203, 299
Bbv12I	GWGCWC	2 cut(s)	502, 519
BbvI	GCAGC	3 cut(s)	47, 128, 362
BccI	CCATC	1 cut(s)	466
BciT130I	CCWGG	3 cut(s)	14, 85, 256
BfaI	CTAG	2 cut(s)	8, 285
BisI	GCNGC	3 cut(s)	61, 142, 351
BlsI	GCNGC	3 cut(s)	62, 143, 352
Bme1390I	CCNGG	3 cut(s)	14, 85, 256
Bme18I	GGWCC	3 cut(s)	16, 24, 308
BmgT120I	GGNCC	3 cut(s)	16, 24, 308
BmiI	GGNNCC	4 cut(s)	25, 89, 205, 301
BmrFI	CCNGG	3 cut(s)	14, 85, 256
BmsI	GCATC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	446
BsaJI	CCNNGG	5 cut(s)	12, 19, 254, 255, 414
Bse1I	ACTGG	2 cut(s)	115, 166
Bse3DI	GCAATG	1 cut(s)	248
BseBI	CCWGG	3 cut(s)	14, 85, 256
BseDI	CCNNGG	5 cut(s)	12, 19, 254, 255, 414
BseGI	GGATG	2 cut(s)	458, 476
BseMI	GCAATG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	65, 191
BseNI	ACTGG	2 cut(s)	115, 166
BseRI	GAGGAG	3 cut(s)	267, 321, 453
BseXI	GCAGC	3 cut(s)	47, 128, 362
BseYI	CCCAGC	1 cut(s)	346
BsgI	GTGCAG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	413
BshNI	GGYRCC	2 cut(s)	203, 299
BsiHKAI	GWGCWC	2 cut(s)	502, 519
BslFI	GGGAC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	502, 519
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	2 cut(s)	64, 190
BspLI	GGNNCC	4 cut(s)	25, 89, 205, 301
BspT104I	TTCGAA	1 cut(s)	446
BspT107I	GGYRCC	2 cut(s)	203, 299
BsrDI	GCAATG	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	115, 166
BssECI	CCNNGG	5 cut(s)	12, 19, 254, 255, 414
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	3 cut(s)	14, 85, 256
Bst4CI	ACNGT	3 cut(s)	203, 454, 470
Bst6I	CTCTTC	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	208, 262, 555
BstDEI	CTNAG	2 cut(s)	51, 177
BstF5I	GGATG	2 cut(s)	458, 476
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 216
BstNI	CCWGG	3 cut(s)	14, 85, 256
BstSCI	CCNGG	3 cut(s)	12, 83, 254
BstV1I	GCAGC	3 cut(s)	47, 128, 362
BstXI	CCANNNNNNTGG	2 cut(s)	34, 214
BsuRI	GGCC	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	458, 476
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	3 cut(s)	208, 262, 555
Cfr13I	GGNCC	3 cut(s)	16, 24, 308
CseI	GACGC	1 cut(s)	384
CviAII	CATG	4 cut(s)	28, 46, 92, 540
DdeI	CTNAG	2 cut(s)	51, 177
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	19
Eco47I	GGWCC	3 cut(s)	16, 24, 308
Eco57I	CTGAAG	3 cut(s)	357, 411, 417
EcoRII	CCWGG	3 cut(s)	12, 83, 254
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	4 cut(s)	31, 49, 95, 543
FaiI	YATR	6 cut(s)	29, 47, 93, 227, 536, 541
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	4 cut(s)	27, 45, 91, 539
Fnu4HI	GCNGC	3 cut(s)	61, 142, 351
FokI	GGATG	2 cut(s)	445, 463
Fsp4HI	GCNGC	3 cut(s)	61, 142, 351
FspBI	CTAG	2 cut(s)	8, 285
GluI	GCNGC	3 cut(s)	61, 142, 351
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	413
HgaI	GACGC	1 cut(s)	384
Hin1II	CATG	4 cut(s)	31, 49, 95, 543
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	2 cut(s)	165, 214
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	376, 418, 481, 566
Hpy188III	TCNNGA	2 cut(s)	389, 435
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	4 cut(s)	138, 321, 381, 435
HpyCH4III	ACNGT	3 cut(s)	203, 454, 470
HpyCH4V	TGCA	3 cut(s)	63, 264, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 216
HpyF3I	CTNAG	2 cut(s)	51, 177
Hsp92II	CATG	4 cut(s)	31, 49, 95, 543
Lsp1109I	GCAGC	3 cut(s)	47, 128, 362
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	8, 285
MaeIII	GTNAC	2 cut(s)	106, 470
MboII	GAAGA	4 cut(s)	126, 423, 497, 540
MhlI	GDGCHC	2 cut(s)	502, 519
MluCI	AATT	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	9 cut(s)	106, 186, 288, 342, 367, 424, 431, 434, 513
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	178
MspR9I	CCNGG	3 cut(s)	14, 85, 256
MvaI	CCWGG	3 cut(s)	14, 85, 256
MwoI	GCNNNNNNNGC	2 cut(s)	66, 216
NlaIII	CATG	4 cut(s)	31, 49, 95, 543
NlaIV	GGNNCC	4 cut(s)	25, 89, 205, 301
NspV	TTCGAA	1 cut(s)	446
OliI	CACNNNNGTG	1 cut(s)	178
PasI	CCCWGGG	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	62, 143, 352
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp6I	CCWGG	3 cut(s)	12, 83, 254
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	3 cut(s)	12, 83, 254
PspN4I	GGNNCC	4 cut(s)	25, 89, 205, 301
PspPI	GGNCC	3 cut(s)	16, 24, 308
RseI	CAYNNNNRTG	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	3 cut(s)	61, 142, 351
Sau96I	GGNCC	3 cut(s)	16, 24, 308
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	3 cut(s)	14, 85, 256
SduI	GDGCHC	2 cut(s)	502, 519
SfaNI	GCATC	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	446
SinI	GGWCC	3 cut(s)	16, 24, 308
SmiMI	CAYNNNNRTG	1 cut(s)	178
Sse9I	AATT	1 cut(s)	560
SspMI	CTAG	2 cut(s)	8, 285
StyD4I	CCNGG	3 cut(s)	12, 83, 254
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	3 cut(s)	203, 454, 470
TaqI	TCGA	1 cut(s)	446
TasI	AATT	1 cut(s)	560
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	3 cut(s)	60, 141, 350
TspDTI	ATGAA	5 cut(s)	120, 309, 378, 417, 497
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	3 cut(s)	16, 24, 308
XapI	RAATTY	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	2 cut(s)	8, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.