Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002890.1

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Forward (+)

68426 .. 71161

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002890.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggcgttcaaaggaattgagttgggtcttgccctggtcttagtgatcatgctactgggtcgagccacagctcaatcaagttgcaccagtacactcgcaagcctggctccatgcctcaactacgttaccggaaactcatcaaccccgtcgtcttcttgctgctcgcagctctcaatagttgtacagtcatcgccgcagtgcctttgctcattgctcaatggcggaggttccacattgggcatcaccataaaccaaacacttgctctatctcttcctggtgcttgtaatgtgaaaactccacccgttagccagtgtaaatctgccaatggacctacaacttcttcagcaagtactcctacagcgatttccccagcagataattccaacaatcaaacacccgcagatgcaaatacacctgaagctgcaattacaccttcagcctcagatgttccagcaggagggtctaaaacagttccatcaacagacggcgacacatccgatggaagcaggagcagcaatgcaccccttcacttcgtactcttcctcattttcgttttgtattcaaggccgctgtcgctcgtctccaagaccgctgtcgctcgtctccaagaccgctgtcgctcgtctcaaaccagttcacagatcggccactgctatcgccagtttttccgacggtcgctgctagctcataccggtcgcacgcctccgatcagattgcttccatctcaggtcgccccactcatcttcttccgaactcagaacgatctcaatctttggttgagaaacaaggtcaactcggtgattgagtcagaacgatctttggttccgaactcagaacgatctcaactcggtcaactcggtgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

288

Amino Acids

30.17

Weight (kDa)

9.02

Isoelectric Point (pI)

59.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	194, 222, 399, 569, 591, 613
AcoI	YGGCCR	1 cut(s)	646
AcuI	CTGAAG	3 cut(s)	327, 420, 438
AfaI	GTAC	4 cut(s)	91, 183, 352, 537
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgeI	ACCGGT	1 cut(s)	692
AgsI	TTSAA	2 cut(s)	10, 564
AjnI	CCWGG	3 cut(s)	33, 102, 274
AluBI	AGCT	4 cut(s)	71, 169, 422, 686
AluI	AGCT	4 cut(s)	71, 169, 422, 686
Alw26I	GTCTC	3 cut(s)	586, 608, 630
AoxI	GGCC	2 cut(s)	566, 646
ApeKI	GCWGC	5 cut(s)	159, 166, 422, 513, 679
AsiGI	ACCGGT	1 cut(s)	692
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	235, 811
AsuNHI	GCTAGC	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	5 cut(s)	146, 178, 409, 525, 666
BccI	CCATC	3 cut(s)	484, 494, 730
BceAI	ACGGC	1 cut(s)	502
BcgI	CGANNNNNNTGC	2 cut(s)	697, 731
BciT130I	CCWGG	3 cut(s)	35, 104, 276
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	3 cut(s)	586, 608, 630
BfaI	CTAG	1 cut(s)	683
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	7 cut(s)	160, 167, 194, 423, 514, 569, 680
BlsI	GCNGC	7 cut(s)	161, 168, 195, 424, 515, 570, 681
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	3 cut(s)	35, 104, 276
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	3 cut(s)	108, 229, 825
BmrFI	CCNGG	3 cut(s)	35, 104, 276
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	249, 394
BmtI	GCTAGC	1 cut(s)	686
BmuI	ACTGGG	1 cut(s)	65
BoxI	GACNNNNGTC	2 cut(s)	593, 615
BpiI	GAAGAC	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	768
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	2 cut(s)	128, 692
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse118I	RCCGGY	1 cut(s)	692
Bse1I	ACTGG	5 cut(s)	60, 87, 310, 633, 661
Bse3DI	GCAATG	2 cut(s)	209, 523
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	3 cut(s)	35, 104, 276
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	494
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	2 cut(s)	209, 523
BseMII	CTCAG	4 cut(s)	456, 740, 770, 846
BseNI	ACTGG	5 cut(s)	60, 87, 310, 633, 661
BseXI	GCAGC	5 cut(s)	146, 178, 409, 525, 666
BseYI	CCCAGC	1 cut(s)	370
Bsh1285I	CGRYCG	2 cut(s)	677, 697
BshFI	GGCC	2 cut(s)	568, 648
BshTI	ACCGGT	1 cut(s)	692
BsiEI	CGRYCG	2 cut(s)	677, 697
BsiSI	CCGG	2 cut(s)	129, 693
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	3 cut(s)	586, 608, 630
BsmBI	CGTCTC	3 cut(s)	586, 608, 630
BsnI	GGCC	2 cut(s)	568, 648
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	6 cut(s)	45, 642, 708, 763, 815, 839
BspACI	CCGC	6 cut(s)	194, 222, 399, 569, 591, 613
BspANI	GGCC	2 cut(s)	568, 648
BspCNI	CTCAG	4 cut(s)	455, 739, 769, 845
BspLI	GGNNCC	3 cut(s)	108, 229, 825
BspOI	GCTAGC	1 cut(s)	686
BsrDI	GCAATG	2 cut(s)	209, 523
BsrFI	RCCGGY	1 cut(s)	692
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	5 cut(s)	60, 87, 310, 633, 661
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	6 cut(s)	45, 642, 708, 763, 815, 839
Bst2UI	CCWGG	3 cut(s)	35, 104, 276
Bst4CI	ACNGT	3 cut(s)	186, 472, 675
Bst6I	CTCTTC	2 cut(s)	276, 545
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	4 cut(s)	100, 164, 684, 701
BstDEI	CTNAG	5 cut(s)	40, 442, 726, 756, 832
BstF5I	GGATG	1 cut(s)	494
BstKTI	GATC	6 cut(s)	48, 645, 711, 766, 818, 842
BstMAI	GTCTC	3 cut(s)	586, 608, 630
BstMBI	GATC	6 cut(s)	45, 642, 708, 763, 815, 839
BstMCI	CGRYCG	2 cut(s)	677, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 513, 574
BstNI	CCWGG	3 cut(s)	35, 104, 276
BstPAI	GACNNNNGTC	2 cut(s)	593, 615
BstSCI	CCNGG	3 cut(s)	33, 102, 274
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	5 cut(s)	146, 178, 409, 525, 666
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	568, 648
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	494
BtsI	GCAGTG	2 cut(s)	203, 649
BtsIMutI	CAGTG	3 cut(s)	203, 317, 649
Cac8I	GCNNGC	4 cut(s)	100, 164, 684, 701
Cfr10I	RCCGGY	1 cut(s)	692
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	4 cut(s)	90, 182, 351, 536
CspAI	ACCGGT	1 cut(s)	692
CviAII	CATG	2 cut(s)	49, 111
CviQI	GTAC	4 cut(s)	90, 182, 351, 536
DdeI	CTNAG	5 cut(s)	40, 442, 726, 756, 832
DpnI	GATC	6 cut(s)	47, 644, 710, 765, 817, 841
DpnII	GATC	6 cut(s)	45, 642, 708, 763, 815, 839
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	2 cut(s)	276, 545
EarI	CTCTTC	2 cut(s)	276, 545
EciI	GGCGGA	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	329
Eco57I	CTGAAG	3 cut(s)	327, 420, 438
EcoRII	CCWGG	3 cut(s)	33, 102, 274
Esp3I	CGTCTC	3 cut(s)	586, 608, 630
FaeI	CATG	2 cut(s)	52, 114
FaiI	YATR	4 cut(s)	50, 112, 248, 690
FatI	CATG	2 cut(s)	48, 110
FauI	CCCGC	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	7 cut(s)	160, 167, 194, 423, 514, 569, 680
FokI	GGATG	1 cut(s)	481
Fsp4HI	GCNGC	7 cut(s)	160, 167, 194, 423, 514, 569, 680
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	7 cut(s)	160, 167, 194, 423, 514, 569, 680
GsaI	CCCAGC	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	568, 648
HapII	CCGG	2 cut(s)	129, 693
Hin1II	CATG	2 cut(s)	52, 114
HincII	GTYRAC	2 cut(s)	793, 854
HindII	GTYRAC	2 cut(s)	793, 854
HinfI	GANTC	1 cut(s)	806
HpaII	CCGG	2 cut(s)	129, 693
HphI	GGTGA	2 cut(s)	235, 811
Hpy166II	GTNNAC	4 cut(s)	92, 638, 793, 854
Hpy8I	GTNNAC	4 cut(s)	92, 638, 793, 854
Hpy99I	CGWCG	2 cut(s)	151, 675
HpyAV	CCTTC	2 cut(s)	444, 536
HpyCH4III	ACNGT	3 cut(s)	186, 472, 675
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	84, 407, 425, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 513, 574
HpyF3I	CTNAG	5 cut(s)	40, 442, 726, 756, 832
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	52, 114
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	6 cut(s)	45, 642, 708, 763, 815, 839
LmnI	GCTCC	2 cut(s)	112, 510
Lsp1109I	GCAGC	5 cut(s)	146, 178, 409, 525, 666
LweI	GCATC	2 cut(s)	249, 394
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	6 cut(s)	47, 644, 710, 765, 817, 841
MboI	GATC	6 cut(s)	45, 642, 708, 763, 815, 839
MboII	GAAGA	6 cut(s)	144, 263, 333, 532, 736, 739
MluCI	AATT	3 cut(s)	15, 379, 426
MlyI	GAGTC	1 cut(s)	815
MmeI	TCCRAC	2 cut(s)	408, 694
MnlI	CCTC	6 cut(s)	125, 218, 451, 452, 554, 714
MspA1I	CMGCKG	3 cut(s)	571, 593, 615
MspI	CCGG	2 cut(s)	129, 693
MspR9I	CCNGG	3 cut(s)	35, 104, 276
MvaI	CCWGG	3 cut(s)	35, 104, 276
MwoI	GCNNNNNNNGC	3 cut(s)	104, 513, 574
NdeII	GATC	6 cut(s)	45, 642, 708, 763, 815, 839
NheI	GCTAGC	1 cut(s)	682
NlaIII	CATG	2 cut(s)	52, 114
NlaIV	GGNNCC	3 cut(s)	108, 229, 825
PinAI	ACCGGT	1 cut(s)	692
PkrI	GCNGC	7 cut(s)	161, 168, 195, 424, 515, 570, 681
PleI	GAGTC	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	814
PshAI	GACNNNNGTC	2 cut(s)	593, 615
Psp6I	CCWGG	3 cut(s)	33, 102, 274
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	3 cut(s)	33, 102, 274
PspN4I	GGNNCC	3 cut(s)	108, 229, 825
PspPI	GGNCC	1 cut(s)	329
RsaI	GTAC	4 cut(s)	91, 183, 352, 537
RsaNI	GTAC	4 cut(s)	90, 182, 351, 536
SatI	GCNGC	7 cut(s)	160, 167, 194, 423, 514, 569, 680
Sau3AI	GATC	6 cut(s)	45, 642, 708, 763, 815, 839
Sau96I	GGNCC	1 cut(s)	329
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	1 cut(s)	815
ScrFI	CCNGG	3 cut(s)	35, 104, 276
SfaNI	GCATC	2 cut(s)	249, 394
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	329
Sse9I	AATT	3 cut(s)	15, 379, 426
SsiI	CCGC	6 cut(s)	194, 222, 399, 569, 591, 613
SspMI	CTAG	1 cut(s)	683
StyD4I	CCNGG	3 cut(s)	33, 102, 274
TaaI	ACNGT	3 cut(s)	186, 472, 675
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	61
TaqII	GACCGA	1 cut(s)	839
TasI	AATT	3 cut(s)	15, 379, 426
TatI	WGTACW	3 cut(s)	89, 181, 350
TauI	GCSGC	2 cut(s)	196, 571
TscAI	CASTG	3 cut(s)	203, 317, 656
TseI	GCWGC	5 cut(s)	159, 166, 422, 513, 679
TspRI	CASTG	3 cut(s)	203, 317, 656
VpaK11BI	GGWCC	1 cut(s)	329
XspI	CTAG	1 cut(s)	683
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.