Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Forward (+)

40086337 .. 40087725

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1282300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCATTCAAAGGAATTGAGATGGTTCTAGCCCTGGTCCTTGGGTCCATGCTATTGGGTGGAGTCATGGCTCAGTTAAGCTGCACCAGCACAATCACAAGCCTGGTTCCATGCCTCAACTTCGTTACTGGAAACACATCAAACCCTTCATCTTCTTGCTGCTCACAGCTCTCTAATGTTGTCCAGTCATCACCTCAGTGCCTTTGCTCTTTGGTCAACGGTGCCAGCTCATTGGGCATCACCATAAACCAAACACTTGCTTTGTCATTGCCCAGGGCTTGCAAAGTGCAAACTCCTCCCCCTAGCCAATGTAAAGGTGCCAATGGACCTTCAACTTCATCATCAACTCCTCCAGCAAGTTCCCCAGCAGCTTCCTCCAATGAAACACCTTCAGAAGCTTCTACTCCTGAAGCGTCCATTTCGCCATTGGCCTCGGACATTCCTTCATCTTCAGGAGGAGGTTCGAAAACAGTCCCATCCACAAACGGTAACACATCCGACGGAAGCACCAGCAGAGCACCTCTTCATTTTGTGCTCTTTCTCGTTTTTGTTATGTCATGTGCTTCTTCGCTCGCCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

195

Amino Acids

19.37

Weight (kDa)

7.48

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	19 - 104	2.1e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 104	7.5e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	221, 317
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	3 cut(s)	375, 429, 435
AgsI	TTSAA	2 cut(s)	10, 333
AjnI	CCWGG	3 cut(s)	33, 102, 272
AleI	CACNNNNGTG	1 cut(s)	196
AluBI	AGCT	5 cut(s)	81, 169, 228, 371, 398
AluI	AGCT	5 cut(s)	81, 169, 228, 371, 398
Alw21I	GWGCWC	2 cut(s)	520, 537
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	3 cut(s)	81, 159, 368
ApoI	RAATTY	1 cut(s)	578
AspS9I	GGNCC	3 cut(s)	37, 45, 326
AsuHPI	GGTGA	2 cut(s)	183, 232
AsuII	TTCGAA	1 cut(s)	464
AvaII	GGWCC	3 cut(s)	37, 45, 326
BanI	GGYRCC	2 cut(s)	221, 317
Bbv12I	GWGCWC	2 cut(s)	520, 537
BbvI	GCAGC	3 cut(s)	68, 146, 380
BccI	CCATC	2 cut(s)	16, 484
BciT130I	CCWGG	3 cut(s)	35, 104, 274
BfaI	CTAG	2 cut(s)	29, 303
BisI	GCNGC	3 cut(s)	82, 160, 369
BlsI	GCNGC	3 cut(s)	83, 161, 370
Bme1390I	CCNGG	3 cut(s)	35, 104, 274
Bme18I	GGWCC	3 cut(s)	37, 45, 326
BmgT120I	GGNCC	3 cut(s)	37, 45, 326
BmiI	GGNNCC	4 cut(s)	46, 108, 223, 319
BmrFI	CCNGG	3 cut(s)	35, 104, 274
BmsI	GCATC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	464
BsaJI	CCNNGG	5 cut(s)	33, 40, 272, 273, 432
Bse1I	ACTGG	2 cut(s)	133, 184
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	3 cut(s)	35, 104, 274
BseDI	CCNNGG	5 cut(s)	33, 40, 272, 273, 432
BseGI	GGATG	2 cut(s)	476, 494
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	86, 209
BseNI	ACTGG	2 cut(s)	133, 184
BseRI	GAGGAG	3 cut(s)	285, 339, 471
BseXI	GCAGC	3 cut(s)	68, 146, 380
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	431
BshNI	GGYRCC	2 cut(s)	221, 317
BsiHKAI	GWGCWC	2 cut(s)	520, 537
BslFI	GGGAC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	520, 537
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	2 cut(s)	85, 208
BspLI	GGNNCC	4 cut(s)	46, 108, 223, 319
BspT104I	TTCGAA	1 cut(s)	464
BspT107I	GGYRCC	2 cut(s)	221, 317
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	133, 184
BssECI	CCNNGG	5 cut(s)	33, 40, 272, 273, 432
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	3 cut(s)	35, 104, 274
Bst4CI	ACNGT	3 cut(s)	221, 472, 488
Bst6I	CTCTTC	1 cut(s)	528
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	226, 280, 573
BstDEI	CTNAG	2 cut(s)	72, 195
BstF5I	GGATG	2 cut(s)	476, 494
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 234
BstNI	CCWGG	3 cut(s)	35, 104, 274
BstSCI	CCNGG	3 cut(s)	33, 102, 272
BstV1I	GCAGC	3 cut(s)	68, 146, 380
BstXI	CCANNNNNNTGG	2 cut(s)	55, 232
BsuRI	GGCC	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	476, 494
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	3 cut(s)	226, 280, 573
Cfr13I	GGNCC	3 cut(s)	37, 45, 326
CseI	GACGC	1 cut(s)	402
CviAII	CATG	4 cut(s)	49, 67, 111, 558
DdeI	CTNAG	2 cut(s)	72, 195
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	40
Eco47I	GGWCC	3 cut(s)	37, 45, 326
Eco57I	CTGAAG	3 cut(s)	375, 429, 435
EcoRII	CCWGG	3 cut(s)	33, 102, 272
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	4 cut(s)	52, 70, 114, 561
FaiI	YATR	6 cut(s)	50, 68, 112, 245, 554, 559
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	4 cut(s)	48, 66, 110, 557
Fnu4HI	GCNGC	3 cut(s)	82, 160, 369
FokI	GGATG	2 cut(s)	463, 481
Fsp4HI	GCNGC	3 cut(s)	82, 160, 369
FspBI	CTAG	2 cut(s)	29, 303
GluI	GCNGC	3 cut(s)	82, 160, 369
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	431
HgaI	GACGC	1 cut(s)	402
Hin1II	CATG	4 cut(s)	52, 70, 114, 561
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	1 cut(s)	63
HphI	GGTGA	2 cut(s)	183, 232
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	4 cut(s)	394, 436, 499, 584
Hpy188III	TCNNGA	2 cut(s)	407, 453
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	4 cut(s)	156, 339, 399, 453
HpyCH4III	ACNGT	3 cut(s)	221, 472, 488
HpyCH4V	TGCA	3 cut(s)	84, 282, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 234
HpyF3I	CTNAG	2 cut(s)	72, 195
Hsp92II	CATG	4 cut(s)	52, 70, 114, 561
Lsp1109I	GCAGC	3 cut(s)	68, 146, 380
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	2 cut(s)	29, 303
MaeIII	GTNAC	2 cut(s)	124, 488
MboII	GAAGA	4 cut(s)	144, 441, 515, 558
MhlI	GDGCHC	2 cut(s)	520, 537
MluCI	AATT	2 cut(s)	15, 578
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	9 cut(s)	125, 204, 306, 360, 385, 442, 449, 452, 531
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	196
MspR9I	CCNGG	3 cut(s)	35, 104, 274
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	3 cut(s)	35, 104, 274
MwoI	GCNNNNNNNGC	2 cut(s)	87, 234
NlaIII	CATG	4 cut(s)	52, 70, 114, 561
NlaIV	GGNNCC	4 cut(s)	46, 108, 223, 319
NspV	TTCGAA	1 cut(s)	464
OliI	CACNNNNGTG	1 cut(s)	196
PasI	CCCWGGG	1 cut(s)	273
PctI	GAATGC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	83, 161, 370
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	3 cut(s)	33, 102, 272
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	3 cut(s)	33, 102, 272
PspN4I	GGNNCC	4 cut(s)	46, 108, 223, 319
PspPI	GGNCC	3 cut(s)	37, 45, 326
RseI	CAYNNNNRTG	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	3 cut(s)	82, 160, 369
Sau96I	GGNCC	3 cut(s)	37, 45, 326
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	3 cut(s)	35, 104, 274
SduI	GDGCHC	2 cut(s)	520, 537
SfaNI	GCATC	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	3 cut(s)	37, 45, 326
SmiMI	CAYNNNNRTG	1 cut(s)	196
Sse9I	AATT	2 cut(s)	15, 578
SspMI	CTAG	2 cut(s)	29, 303
StyD4I	CCNGG	3 cut(s)	33, 102, 272
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	221, 472, 488
TaqI	TCGA	1 cut(s)	464
TasI	AATT	2 cut(s)	15, 578
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	3 cut(s)	81, 159, 368
TspDTI	ATGAA	5 cut(s)	138, 327, 396, 435, 515
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	3 cut(s)	37, 45, 326
XapI	RAATTY	1 cut(s)	578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XspI	CTAG	2 cut(s)	29, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.