Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Forward (+)

51960191 .. 51961378

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCATTCAAAGGAATTGAGATGGGTCTAGCCCTGATCCTAGTGACCATGCTACTGGGTCGAGCCACAGCTCAATCAAGTTGCAGTAGTACACTCACAAGCCTGTCCCCATGCCTAAATTACATTACAGGAAACTCATCAAATCCATCGTCTTCTTGCTGCTCACAGCTCTCAAATGTTGTTCAGTCATCGCCGCAGTGCCTATGCTCAGTGCTTAATAGCGCCGGTTCCACATTGGGCATCACAATAAACCAAACACTTGCTCTTTCTCTTCCTGGTGCTTGCAATGTGAAAACTCCACCCATTAACCAGTGTCAATCTGCCAATGGACCTACAACTTCTTCATCAAGTACTCCACCAGCAATTTCCCCAGCAGCTGGTTCCTCAAATGAAACCCCTGCAGATGCAGATACCCCTGAAGCTGCAATTACGCCTTCAGCTTCGGATGTTCCTCCAACAGGAGGATCTAAAACAGTGCCATCAACAGACGGTAACACATCAGATGGAAGCAGCATCAAAGCCCCCCTTCATTTTGTGCTCTTCTTCATTTTCGTGATATCTTGTGCTTCAAGTTTCACCAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

195

Amino Acids

19.56

Weight (kDa)

5.04

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	19 - 105	5e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 105	1.2e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	31, 472
AcuI	CTGAAG	2 cut(s)	420, 438
AfaI	GTAC	2 cut(s)	91, 352
AfiI	CCNNNNNNNGG	3 cut(s)	377, 458, 461
AgsI	TTSAA	2 cut(s)	10, 570
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	5 cut(s)	71, 169, 377, 422, 440
AluI	AGCT	5 cut(s)	71, 169, 377, 422, 440
Alw21I	GWGCWC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	31, 472
AlwNI	CAGNNNCTG	1 cut(s)	377
ApeKI	GCWGC	4 cut(s)	159, 374, 422, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	4 cut(s)	146, 386, 409, 522
BccI	CCATC	4 cut(s)	16, 154, 487, 497
BciT130I	CCWGG	1 cut(s)	276
BfaI	CTAG	2 cut(s)	29, 41
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	5 cut(s)	160, 194, 375, 423, 511
BlsI	GCNGC	5 cut(s)	161, 195, 376, 424, 512
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	229, 382
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	3 cut(s)	249, 394, 522
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 458, 461
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	60, 310
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	377, 458, 461
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	60, 310
BseXI	GCAGC	4 cut(s)	146, 386, 409, 522
BseYI	CCCAGC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	3 cut(s)	377, 458, 461
BsmFI	GGGAC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	2 cut(s)	36, 464
BspACI	CCGC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	229, 382
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	2 cut(s)	31, 472
BspQI	GCTCTTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	60, 310
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	2 cut(s)	36, 464
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	475, 491
Bst6I	CTCTTC	2 cut(s)	276, 545
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	208
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	451
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	2 cut(s)	39, 467
BstMBI	GATC	2 cut(s)	36, 464
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	4 cut(s)	146, 386, 409, 522
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	464
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	464
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	4 cut(s)	203, 216, 317, 480
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	90, 351
CviAII	CATG	2 cut(s)	49, 111
CviJI	RGCY	9 cut(s)	32, 65, 71, 102, 169, 377, 422, 440, 521
CviKI_1	RGCY	9 cut(s)	32, 65, 71, 102, 169, 377, 422, 440, 521
CviQI	GTAC	2 cut(s)	90, 351
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	2 cut(s)	38, 466
DpnII	GATC	2 cut(s)	36, 464
Eam1104I	CTCTTC	2 cut(s)	276, 545
EarI	CTCTTC	2 cut(s)	276, 545
Eco32I	GATATC	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	329
Eco57I	CTGAAG	2 cut(s)	420, 438
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	558
FaeI	CATG	2 cut(s)	52, 114
FaiI	YATR	3 cut(s)	50, 112, 205
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	48, 110
Fnu4HI	GCNGC	5 cut(s)	160, 194, 375, 423, 511
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	5 cut(s)	160, 194, 375, 423, 511
FspBI	CTAG	2 cut(s)	29, 41
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	5 cut(s)	160, 194, 375, 423, 511
GsaI	CCCAGC	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	225
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	52, 114
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	445, 502
Hpy188III	TCNNGA	1 cut(s)	553
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	444, 536
HpyCH4III	ACNGT	2 cut(s)	475, 491
HpyCH4V	TGCA	5 cut(s)	84, 285, 401, 407, 425
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	52, 114
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	36, 464
LguI	GCTCTTC	1 cut(s)	545
Lsp1109I	GCAGC	4 cut(s)	146, 386, 409, 522
LweI	GCATC	3 cut(s)	249, 394, 522
MaeI	CTAG	2 cut(s)	29, 41
MaeIII	GTNAC	2 cut(s)	43, 491
MalI	GATC	2 cut(s)	38, 466
MboI	GATC	2 cut(s)	36, 464
MboII	GAAGA	5 cut(s)	144, 263, 333, 532, 535
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	4 cut(s)	15, 118, 363, 426
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	3 cut(s)	394, 455, 462
MseI	TTAA	3 cut(s)	216, 306, 586
MslI	CAYNNNNRTG	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	36, 464
NlaIII	CATG	2 cut(s)	52, 114
NlaIV	GGNNCC	2 cut(s)	229, 382
NmuCI	GTSAC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	545
PctI	GAATGC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	5 cut(s)	161, 195, 376, 424, 512
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	229, 382
PspPI	GGNCC	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	91, 352
RsaNI	GTAC	2 cut(s)	90, 351
RseI	CAYNNNNRTG	1 cut(s)	551
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	3 cut(s)	216, 306, 586
SatI	GCNGC	5 cut(s)	160, 194, 375, 423, 511
Sau3AI	GATC	2 cut(s)	36, 464
Sau96I	GGNCC	1 cut(s)	329
ScaI	AGTACT	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	540
SetI	ASST	6 cut(s)	73, 171, 334, 379, 424, 442
SfaNI	GCATC	3 cut(s)	249, 394, 522
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	551
Sse9I	AATT	4 cut(s)	15, 118, 363, 426
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	2 cut(s)	29, 41
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	475, 491
TaqI	TCGA	1 cut(s)	61
TasI	AATT	4 cut(s)	15, 118, 363, 426
TatI	WGTACW	2 cut(s)	89, 350
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	216, 306, 586
Tru9I	TTAA	3 cut(s)	216, 306, 586
TscAI	CASTG	4 cut(s)	203, 216, 317, 480
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	4 cut(s)	159, 374, 422, 510
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	4 cut(s)	333, 405, 518, 535
TspRI	CASTG	4 cut(s)	203, 216, 317, 480
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	456
XspI	CTAG	2 cut(s)	29, 41
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.