Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG336900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCATTCAAAGGAATTGAGATGGGTCTAGCCCTGATCCTAGTGACCATGCTACTGGGTCGAGCCACAGCTCAATCAAGTTGCAGTAGTACACTCACAAGCCTGTCTCCATGCCTAAATTACATTACAGGAAACTCATCAAATCCATCGTCTTCTTGCTGCTCACAGCTCTCAAATGTTGTTCAGTCATCGCCGCAGTGCCTATGCTCAGTGCTTAATAGCGCCGGTTCCACATTGGGCATCACAATAAACCAAACACTTGCTCTGTCTCTTCCTGGTGCTTGCAATGTGAAAACTCCACCCATTAACCAGTGTCAATCAGCTGCCAATGGACCTACAACTTCTTCAGCAAGTACTCCTACAGCGAGTTCCCCAGCGGATAATTCCAACAATCAAACACCCGAAGATGCAAATACACCTGAAGCTGCAATTACACCTTCAGCCTCAGATGTTCCAGCAGGAGGGTCTAAAACAGTTCCATCAACAGACGGCGACACATCCAATGGAAGCAGGAGCATCAACGCACTCCTTCACTTCGTGCTCTTCCTCATTTTCGTTGTATCCTGTGCTTCAAGCATCACCAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

196

Amino Acids

19.72

Weight (kDa)

5.04

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	19 - 105	5e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 105	1.2e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	194, 377
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	3 cut(s)	330, 423, 441
AdeI	CACNNNGTG	1 cut(s)	538
AfaI	GTAC	2 cut(s)	91, 355
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	10, 573
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	4 cut(s)	71, 169, 323, 425
AluI	AGCT	4 cut(s)	71, 169, 323, 425
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	2 cut(s)	111, 273
AlwI	GGATC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	159, 323, 425
ApoI	RAATTY	1 cut(s)	584
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	3 cut(s)	146, 310, 412
BccI	CCATC	3 cut(s)	16, 154, 487
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	571
BcoDI	GTCTC	2 cut(s)	111, 273
BfaI	CTAG	2 cut(s)	29, 41
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	571
BisI	GCNGC	4 cut(s)	160, 194, 324, 426
BlsI	GCNGC	4 cut(s)	161, 195, 325, 427
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	4 cut(s)	249, 397, 525, 585
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	60, 310
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	497
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	222, 459
BseNI	ACTGG	2 cut(s)	60, 310
BseXI	GCAGC	3 cut(s)	146, 310, 412
BseYI	CCCAGC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	2 cut(s)	111, 273
BsmI	GAATGC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	2 cut(s)	194, 377
BspCNI	CTCAG	2 cut(s)	221, 458
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	31
BspQI	GCTCTTC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	60, 310
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	2 cut(s)	276, 548
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	2 cut(s)	208, 445
BstF5I	GGATG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	2 cut(s)	111, 273
BstMBI	GATC	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	146, 310, 412
BstV2I	GAAGAC	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	571
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	497
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	3 cut(s)	203, 216, 317
Cac8I	GCNNGC	1 cut(s)	283
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	90, 354
CviAII	CATG	2 cut(s)	49, 111
CviJI	RGCY	8 cut(s)	32, 65, 71, 102, 169, 323, 425, 443
CviKI_1	RGCY	8 cut(s)	32, 65, 71, 102, 169, 323, 425, 443
CviQI	GTAC	2 cut(s)	90, 354
DdeI	CTNAG	2 cut(s)	208, 445
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
DraIII	CACNNNGTG	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	276, 548
EarI	CTCTTC	2 cut(s)	276, 548
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	3 cut(s)	330, 423, 441
EcoRII	CCWGG	1 cut(s)	274
FaeI	CATG	2 cut(s)	52, 114
FaiI	YATR	3 cut(s)	50, 112, 205
FatI	CATG	2 cut(s)	48, 110
Fnu4HI	GCNGC	4 cut(s)	160, 194, 324, 426
FokI	GGATG	1 cut(s)	484
Fsp4HI	GCNGC	4 cut(s)	160, 194, 324, 426
FspBI	CTAG	2 cut(s)	29, 41
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	4 cut(s)	160, 194, 324, 426
GsaI	CCCAGC	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	225
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	52, 114
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	448
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	447, 539
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	4 cut(s)	84, 285, 410, 428
HpyF3I	CTNAG	2 cut(s)	208, 445
Hsp92II	CATG	2 cut(s)	52, 114
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	1 cut(s)	513
Lsp1109I	GCAGC	3 cut(s)	146, 310, 412
LweI	GCATC	4 cut(s)	249, 397, 525, 585
MaeI	CTAG	2 cut(s)	29, 41
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	5 cut(s)	144, 263, 336, 416, 535
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	5 cut(s)	15, 118, 382, 429, 584
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	3 cut(s)	454, 455, 557
MseI	TTAA	2 cut(s)	216, 306
MspA1I	CMGCKG	2 cut(s)	323, 377
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	276
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	52, 114
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	548
PctI	GAATGC	1 cut(s)	5
PkrI	GCNGC	4 cut(s)	161, 195, 325, 427
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	91, 355
RsaNI	GTAC	2 cut(s)	90, 354
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	216, 306
SatI	GCNGC	4 cut(s)	160, 194, 324, 426
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	332
ScaI	AGTACT	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	543
SetI	ASST	7 cut(s)	73, 171, 325, 337, 421, 427, 439
SfaNI	GCATC	4 cut(s)	249, 397, 525, 585
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	5 cut(s)	15, 118, 382, 429, 584
SsiI	CCGC	2 cut(s)	194, 377
SspMI	CTAG	2 cut(s)	29, 41
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	61
TasI	AATT	5 cut(s)	15, 118, 382, 429, 584
TatI	WGTACW	2 cut(s)	89, 353
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	216, 306
Tru9I	TTAA	2 cut(s)	216, 306
TscAI	CASTG	3 cut(s)	203, 216, 317
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	159, 323, 425
Tsp45I	GTSAC	1 cut(s)	43
TspRI	CASTG	3 cut(s)	203, 216, 317
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	584
XspI	CTAG	2 cut(s)	29, 41
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.