Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Forward (+)

53478522 .. 53478967

Gene Structure 446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26065

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGTTCAAAGGAATTGAGTTGGGTCTTGCCCTGGTCTTAGTGATCATGCTACTGGGTCGAGCCACAGCTCAATCAAGTTGCACCAGTACACTAGCAAGCCTGGCTCCATGCCTCAACTACGTTACCGGAAACTCATCAACCCCGTCGTCTTCTTGCTGCTCACAGCTCTCAATAGTTGTACAGTCATCGCCGCAGTGCCTTTGCTCATTGCTCAATGGCGGAGGTTCCACATTGGGCATCACCATAAACCAAACACTTGCTCTATCTCTTCCTGGTGCTTGTAATGTGAAAACTCCTCCCGTTAGCCAGTGTAAATGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

108

Amino Acids

10.89

Weight (kDa)

8.66

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	18 - 105	2.3e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 105	6.2e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	194, 222
AfaI	GTAC	2 cut(s)	91, 183
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	33, 102, 274
AluBI	AGCT	2 cut(s)	71, 169
AluI	AGCT	2 cut(s)	71, 169
ApeKI	GCWGC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	146
BciT130I	CCWGG	3 cut(s)	35, 104, 276
BclI	TGATCA	1 cut(s)	45
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	160, 194
BlsI	GCNGC	2 cut(s)	161, 195
Bme1390I	CCNGG	3 cut(s)	35, 104, 276
BmiI	GGNNCC	2 cut(s)	108, 229
BmrFI	CCNGG	3 cut(s)	35, 104, 276
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	128
Bse1I	ACTGG	3 cut(s)	60, 87, 310
Bse3DI	GCAATG	1 cut(s)	209
BseBI	CCWGG	3 cut(s)	35, 104, 276
BseDI	CCNNGG	1 cut(s)	33
BseMI	GCAATG	1 cut(s)	209
BseNI	ACTGG	3 cut(s)	60, 87, 310
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	2 cut(s)	194, 222
BspLI	GGNNCC	2 cut(s)	108, 229
BsrDI	GCAATG	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	3 cut(s)	60, 87, 310
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	35, 104, 276
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	3 cut(s)	35, 104, 276
BstSCI	CCNGG	3 cut(s)	33, 102, 274
BstV1I	GCAGC	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	174
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	203, 317
Cac8I	GCNNGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	90, 182
CviAII	CATG	2 cut(s)	49, 111
CviJI	RGCY	6 cut(s)	65, 71, 102, 107, 169, 309
CviKI_1	RGCY	6 cut(s)	65, 71, 102, 107, 169, 309
CviQI	GTAC	2 cut(s)	90, 182
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	237
EcoRII	CCWGG	3 cut(s)	33, 102, 274
FaeI	CATG	2 cut(s)	52, 114
FaiI	YATR	3 cut(s)	50, 112, 248
FatI	CATG	2 cut(s)	48, 110
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	160, 194
Fsp4HI	GCNGC	2 cut(s)	160, 194
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	2 cut(s)	160, 194
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	52, 114
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	92
Hpy99I	CGWCG	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	52, 114
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	2 cut(s)	144, 263
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	3 cut(s)	125, 218, 309
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	35, 104, 276
MvaI	CCWGG	3 cut(s)	35, 104, 276
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	2 cut(s)	52, 114
NlaIV	GGNNCC	2 cut(s)	108, 229
PkrI	GCNGC	2 cut(s)	161, 195
Psp6I	CCWGG	3 cut(s)	33, 102, 274
PspGI	CCWGG	3 cut(s)	33, 102, 274
PspN4I	GGNNCC	2 cut(s)	108, 229
RsaI	GTAC	2 cut(s)	91, 183
RsaNI	GTAC	2 cut(s)	90, 182
SatI	GCNGC	2 cut(s)	160, 194
Sau3AI	GATC	1 cut(s)	45
ScrFI	CCNGG	3 cut(s)	35, 104, 276
SetI	ASST	4 cut(s)	73, 126, 171, 229
SfaNI	GCATC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	2 cut(s)	194, 222
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	33, 102, 274
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	61
TasI	AATT	1 cut(s)	15
TatI	WGTACW	2 cut(s)	89, 181
TauI	GCSGC	1 cut(s)	196
TscAI	CASTG	2 cut(s)	203, 317
TseI	GCWGC	1 cut(s)	159
TspRI	CASTG	2 cut(s)	203, 317
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.