Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Forward (+)

19022163 .. 19023619

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23211.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCATTCAAAGGAATTGAGATGGGTCTAGCCCTGGTCCTAGTGACCATGCTACTGGGTCGAGCCACAGCTCAATCAAGTTGCACCAGTACACTCACAAGCATGTCTCCATGCCTCAACTACATTACAGGAAACTCATCGAACCCGTCGTCTTCTTGCTGCTCACAGCTCTCAAATGTTGTTCAGTCATCGCCGCAGTGCCTATGCTCATTGCTCAATGGCGCCGGTTCCACATTGGGGATCACCATAAACCAAACACTTGCTCTGTCTCTTCCTGGTGCTTGCAATGTGAAAACTCCACCCATTAACCAGTGTCAATCTGCCAATGGACCTACAACTTCCACATCAAGTACTCCACCAGCAATTTCCCCAGCTGGTTCCTCAAATGATACCCCTGCAGCTGCAGATACGCCTGAAGCTGCAGTTACGCCTTCAGCTTCGGACGTTCCTTCAACAGGAGGGTCTAAAACAGTGCCATCAACCGACGATGGTAACACATCAGACGGAAGCAGCATCAAAGCACCCCTTAATTTTGTGCTCTTCCTCATTTTCGTCATATCTTGCGCTTCAAGTTTCACCAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

196

Amino Acids

19.48

Weight (kDa)

4.66

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	18 - 105	9e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 105	3.8e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	248
AcuI	CTGAAG	2 cut(s)	417, 435
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	91, 352
AfiI	CCNNNNNNNGG	2 cut(s)	237, 455
AgsI	TTSAA	3 cut(s)	10, 453, 570
AjnI	CCWGG	2 cut(s)	33, 274
AluBI	AGCT	6 cut(s)	71, 169, 374, 401, 419, 437
AluI	AGCT	6 cut(s)	71, 169, 374, 401, 419, 437
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	2 cut(s)	111, 273
AlwI	GGATC	1 cut(s)	248
ApeKI	GCWGC	5 cut(s)	159, 398, 401, 419, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspLEI	GCGC	2 cut(s)	224, 566
AspS9I	GGNCC	2 cut(s)	37, 329
AsuHPI	GGTGA	2 cut(s)	235, 568
AvaII	GGWCC	2 cut(s)	37, 329
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	5 cut(s)	146, 388, 406, 410, 522
BccI	CCATC	3 cut(s)	16, 482, 484
BciT130I	CCWGG	2 cut(s)	35, 276
BcoDI	GTCTC	2 cut(s)	111, 273
BfaI	CTAG	2 cut(s)	29, 41
BfmI	CTRYAG	3 cut(s)	396, 402, 420
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	6 cut(s)	160, 194, 399, 402, 420, 511
BlsI	GCNGC	6 cut(s)	161, 195, 400, 403, 421, 512
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	35, 276
Bme18I	GGWCC	2 cut(s)	37, 329
BmgT120I	GGNCC	2 cut(s)	37, 329
BmiI	GGNNCC	3 cut(s)	223, 229, 379
BmrFI	CCNGG	2 cut(s)	35, 276
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 455
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	3 cut(s)	60, 87, 310
Bse3DI	GCAATG	2 cut(s)	209, 292
BseBI	CCWGG	2 cut(s)	35, 276
BseDI	CCNNGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	237, 455
BseMI	GCAATG	2 cut(s)	209, 292
BseNI	ACTGG	3 cut(s)	60, 87, 310
BseXI	GCAGC	5 cut(s)	146, 388, 406, 410, 522
BseYI	CCCAGC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	225
BslI	CCNNNNNNNGG	2 cut(s)	237, 455
BsmAI	GTCTC	2 cut(s)	111, 273
BsmI	GAATGC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	194
BspLI	GGNNCC	3 cut(s)	223, 229, 379
BspMAI	CTGCAG	3 cut(s)	400, 406, 424
BspPI	GGATC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	209, 292
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	3 cut(s)	60, 87, 310
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	240
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	35, 276
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	2 cut(s)	276, 545
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	283
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	224, 566
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	2 cut(s)	111, 273
BstMBI	GATC	1 cut(s)	240
BstNI	CCWGG	2 cut(s)	35, 276
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	33, 274
BstSFI	CTRYAG	3 cut(s)	396, 402, 420
BstV1I	GCAGC	5 cut(s)	146, 388, 406, 410, 522
BstV2I	GAAGAC	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	55
BtgZI	GCGATG	1 cut(s)	174
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	3 cut(s)	203, 317, 477
Cac8I	GCNNGC	1 cut(s)	283
CfoI	GCGC	2 cut(s)	224, 566
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	37, 329
Csp6I	GTAC	2 cut(s)	90, 351
CviAII	CATG	3 cut(s)	49, 103, 111
CviJI	RGCY	8 cut(s)	32, 65, 71, 169, 374, 401, 419, 437
CviKI_1	RGCY	8 cut(s)	32, 65, 71, 169, 374, 401, 419, 437
CviQI	GTAC	2 cut(s)	90, 351
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	276, 545
EarI	CTCTTC	2 cut(s)	276, 545
Eco47I	GGWCC	2 cut(s)	37, 329
Eco57I	CTGAAG	2 cut(s)	417, 435
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	33, 274
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaeI	CATG	3 cut(s)	52, 106, 114
FaiI	YATR	6 cut(s)	50, 104, 112, 205, 248, 557
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	3 cut(s)	48, 102, 110
Fnu4HI	GCNGC	6 cut(s)	160, 194, 399, 402, 420, 511
Fsp4HI	GCNGC	6 cut(s)	160, 194, 399, 402, 420, 511
FspBI	CTAG	2 cut(s)	29, 41
GlaI	GCGC	2 cut(s)	223, 565
GluI	GCNGC	6 cut(s)	160, 194, 399, 402, 420, 511
GsaI	CCCAGC	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	225
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	2 cut(s)	224, 566
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	52, 106, 114
Hin6I	GCGC	2 cut(s)	222, 564
HinP1I	GCGC	2 cut(s)	222, 564
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	2 cut(s)	235, 568
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	442, 502
Hpy8I	GTNNAC	1 cut(s)	92
Hpy99I	CGWCG	2 cut(s)	151, 488
HpyAV	CCTTC	2 cut(s)	441, 459
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	5 cut(s)	84, 285, 398, 404, 422
HpySE526I	ACGT	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	52, 106, 114
HspAI	GCGC	2 cut(s)	222, 564
KasI	GGCGCC	1 cut(s)	221
Kzo9I	GATC	1 cut(s)	240
LguI	GCTCTTC	1 cut(s)	545
Lsp1109I	GCAGC	5 cut(s)	146, 388, 406, 410, 522
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	29, 41
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	3 cut(s)	43, 424, 491
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	3 cut(s)	144, 263, 532
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	3 cut(s)	15, 363, 529
Mly113I	GGCGCC	1 cut(s)	222
MnlI	CCTC	4 cut(s)	125, 391, 452, 554
MseI	TTAA	3 cut(s)	306, 528, 586
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	2 cut(s)	374, 401
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	2 cut(s)	35, 276
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	2 cut(s)	35, 276
NarI	GGCGCC	1 cut(s)	222
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	3 cut(s)	52, 106, 114
NlaIV	GGNNCC	3 cut(s)	223, 229, 379
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	1 cut(s)	5
PkrI	GCNGC	6 cut(s)	161, 195, 400, 403, 421, 512
PluTI	GGCGCC	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	33, 274
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	2 cut(s)	33, 274
PspN4I	GGNNCC	3 cut(s)	223, 229, 379
PspPI	GGNCC	2 cut(s)	37, 329
PstI	CTGCAG	3 cut(s)	400, 406, 424
PvuII	CAGCTG	2 cut(s)	374, 401
RsaI	GTAC	2 cut(s)	91, 352
RsaNI	GTAC	2 cut(s)	90, 351
RseI	CAYNNNNRTG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	3 cut(s)	306, 528, 586
SatI	GCNGC	6 cut(s)	160, 194, 399, 402, 420, 511
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	2 cut(s)	37, 329
ScaI	AGTACT	1 cut(s)	352
ScrFI	CCNGG	2 cut(s)	35, 276
SduI	GDGCHC	1 cut(s)	540
SetI	ASST	8 cut(s)	73, 171, 334, 376, 403, 421, 439, 447
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	3 cut(s)	396, 402, 420
SfoI	GGCGCC	1 cut(s)	223
SinI	GGWCC	2 cut(s)	37, 329
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	15, 363, 529
SsiI	CCGC	1 cut(s)	194
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	2 cut(s)	29, 41
StyD4I	CCNGG	2 cut(s)	33, 274
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	2 cut(s)	61, 140
TasI	AATT	3 cut(s)	15, 363, 529
TatI	WGTACW	2 cut(s)	89, 350
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	306, 528, 586
Tru9I	TTAA	3 cut(s)	306, 528, 586
TscAI	CASTG	3 cut(s)	203, 317, 477
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	5 cut(s)	159, 398, 401, 419, 510
Tsp45I	GTSAC	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	3 cut(s)	203, 317, 477
VpaK11BI	GGWCC	2 cut(s)	37, 329
XagI	CCTNNNNNAGG	1 cut(s)	453
XceI	RCATGY	1 cut(s)	106
XspI	CTAG	2 cut(s)	29, 41
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.