Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Forward (+)

20971361 .. 20972511

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G237900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCATTCAAAGGAATTGAAATGGCTCTAGCCCTCGTCCTTGGGTCCATGCTTTTGGGTGGAGCCATGGCTCAATCAGGCTGTACCACTGCACTCACAAGCCTGGCACCATGCCTCAACTATGTCACAGGAAACTCATCAAACCCATCATCTTCATGCTGCTCACAGCTTTCTAATGTTGTCCAGTCATCACCACAGTGCCTTTGCTCATTGCTCAATGGTGGCGGCTCCTCATTGGGTATCACCATAAACCAAACCCTTGCTCTGTCTCTTCCTGCTGCCTGTAAAGTCCAAACTCCACCCGCTAGCCAGTGTCAAGGTGCCAATGGACCTACAACAAGTCCATCAACTCCTCCAGCAAGTTCCTCTGCAGATCCCTCCAATCAAACACCTTCAGATGCTTCTACACCAGAAGCTGCAATTTCGCCTTCGGCCTCAGACATTCCTTCAGCTTCAGGAGAAGGGTCGAAAACAGTTCCATCCACAAACGGAAACACATCTGATGGAAGCAACATCAAAGCACCCCTTCACTTTGTTCCCTTGCTCCTTTTCGTTATCTCTTGTGCTTCTACTCTCACCAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

196

Amino Acids

19.18

Weight (kDa)

4.65

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	106, 320
AciI	CCGC	2 cut(s)	225, 303
AclWI	GGATC	1 cut(s)	368
AcuI	CTGAAG	3 cut(s)	378, 432, 438
AfaI	GTAC	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	10, 20
AjnI	CCWGG	1 cut(s)	102
AleI	CACNNNNGTG	1 cut(s)	196
AluBI	AGCT	3 cut(s)	169, 416, 452
AluI	AGCT	3 cut(s)	169, 416, 452
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	159, 278, 416
AspS9I	GGNCC	2 cut(s)	45, 329
AsuHPI	GGTGA	3 cut(s)	183, 235, 568
AsuNHI	GCTAGC	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	45, 329
BanI	GGYRCC	2 cut(s)	106, 320
BbvI	GCAGC	3 cut(s)	146, 265, 403
BccI	CCATC	4 cut(s)	154, 352, 487, 497
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	29, 306
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	4 cut(s)	160, 226, 279, 417
BlsI	GCNGC	4 cut(s)	161, 227, 280, 418
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	45, 329
BmgT120I	GGNCC	2 cut(s)	45, 329
BmiI	GGNNCC	5 cut(s)	46, 64, 108, 229, 322
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	388
BmtI	GCTAGC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	40, 66
Bse1I	ACTGG	3 cut(s)	184, 310, 579
Bse3DI	GCAATG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	40, 66
BseGI	GGATG	1 cut(s)	479
BseMI	GCAATG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	3 cut(s)	184, 310, 579
BseRI	GAGGAG	2 cut(s)	220, 342
BseXI	GCAGC	3 cut(s)	146, 265, 403
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	434
BshNI	GGYRCC	2 cut(s)	106, 320
BsmAI	GTCTC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	2 cut(s)	225, 303
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	1 cut(s)	449
BspLI	GGNNCC	5 cut(s)	46, 64, 108, 229, 322
BspMAI	CTGCAG	1 cut(s)	373
BspOI	GCTAGC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	368
BspT107I	GGYRCC	2 cut(s)	106, 320
BsrDI	GCAATG	1 cut(s)	209
BsrI	ACTGG	3 cut(s)	184, 310, 579
BssECI	CCNNGG	2 cut(s)	40, 66
BssMI	GATC	1 cut(s)	373
BssT1I	CCWWGG	2 cut(s)	40, 66
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	198, 475
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	436
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	479
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	373
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	146, 265, 403
BstX2I	RGATCY	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	479
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	3 cut(s)	87, 203, 317
Cac8I	GCNNGC	1 cut(s)	307
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	45, 329
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	4 cut(s)	49, 67, 111, 156
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	436
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	40, 66
Eco47I	GGWCC	2 cut(s)	45, 329
Eco57I	CTGAAG	3 cut(s)	378, 432, 438
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	40, 66
ErhI	CCWWGG	2 cut(s)	40, 66
FaeI	CATG	4 cut(s)	52, 70, 114, 159
FaiI	YATR	6 cut(s)	50, 68, 112, 123, 157, 248
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	4 cut(s)	48, 66, 110, 155
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	4 cut(s)	160, 226, 279, 417
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	4 cut(s)	160, 226, 279, 417
FspBI	CTAG	2 cut(s)	29, 306
GluI	GCNGC	4 cut(s)	160, 226, 279, 417
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	434
Hin1II	CATG	4 cut(s)	52, 70, 114, 159
HphI	GGTGA	3 cut(s)	183, 235, 568
Hpy188I	TCNGA	3 cut(s)	397, 439, 502
Hpy188III	TCNNGA	1 cut(s)	456
HpyAV	CCTTC	5 cut(s)	402, 438, 455, 456, 536
HpyCH4III	ACNGT	2 cut(s)	198, 475
HpyCH4V	TGCA	3 cut(s)	92, 371, 419
HpyF3I	CTNAG	1 cut(s)	436
Hsp92II	CATG	4 cut(s)	52, 70, 114, 159
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	3 cut(s)	62, 233, 549
Lsp1109I	GCAGC	3 cut(s)	146, 265, 403
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	29, 306
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	2 cut(s)	144, 263
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	2 cut(s)	15, 420
MnlI	CCTC	7 cut(s)	44, 125, 241, 363, 376, 388, 445
MslI	CAYNNNNRTG	2 cut(s)	154, 196
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	373
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	4 cut(s)	52, 70, 114, 159
NlaIV	GGNNCC	5 cut(s)	46, 64, 108, 229, 322
NmuCI	GTSAC	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	196
PctI	GAATGC	1 cut(s)	5
PkrI	GCNGC	4 cut(s)	161, 227, 280, 418
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	5 cut(s)	46, 64, 108, 229, 322
PspPI	GGNCC	2 cut(s)	45, 329
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	2 cut(s)	154, 196
SatI	GCNGC	4 cut(s)	160, 226, 279, 417
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	2 cut(s)	45, 329
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	171, 322, 334, 394, 418, 454
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	2 cut(s)	45, 329
SmiMI	CAYNNNNRTG	2 cut(s)	154, 196
Sse9I	AATT	2 cut(s)	15, 420
SsiI	CCGC	2 cut(s)	225, 303
SspMI	CTAG	2 cut(s)	29, 306
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	40, 66
TaaI	ACNGT	2 cut(s)	198, 475
TaqI	TCGA	1 cut(s)	467
TasI	AATT	2 cut(s)	15, 420
TauI	GCSGC	1 cut(s)	228
TscAI	CASTG	3 cut(s)	94, 203, 317
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	159, 278, 416
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	3 cut(s)	94, 203, 317
VpaK11BI	GGWCC	2 cut(s)	45, 329
XspI	CTAG	2 cut(s)	29, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.