Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Forward (+)

56352213 .. 56353047

Gene Structure 835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCGTTCAAAGGAATTGAGTTGGGTCTTGCCCTGGTCTTAGTGATCATGCTACTGGGTCGAGCCACAGCTCAATCAAGTTGCACCAGTACACTCGCAAGCCTGGCTCCATGCCTCAACTACGTTACCGGAAACTCATCAACCCCGTCGTCTTCTTGCTGCTCGCAGCTCTCAATAGTTGTACAGTCATCGCCGCAGTGCCTTTGCTCATTGCTCAATGGCGGAGGTTCCACATTGGGCATCACCATAAACCAAACACTTGCTCTATCTCTTCCTGGTGCTTGTAATGTGAAAACTCCACCCGTTAGCCAGTGTAAATCTGCCAATGGACCTACAACTTCTTCAGCAAGTACTCCTACAGCGAGATCACCAGCAGATAATTCCAACAATCAAACACCCGCAGATGCAAATACACCTGAAGCTGCAATTACACCTTCAGCCTCAGATGTTCCAGCAGGAGGGTCTAAAACAGTTCCATCAACAGACGGCGACACATCCGATGGAAGCAGGAACATCAATGCACCCCTTCACTTCGTGCTCTTCCTCATTTTCGTTGTATCCTGTGCTTCAAGCATCACCAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

195

Amino Acids

19.53

Weight (kDa)

6.5

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	19 - 105	1.3e-18	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 105	7.3e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	194, 222, 399
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	3 cut(s)	327, 420, 438
AdeI	CACNNNGTG	1 cut(s)	535
AfaI	GTAC	3 cut(s)	91, 183, 352
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgsI	TTSAA	2 cut(s)	10, 570
AjnI	CCWGG	3 cut(s)	33, 102, 274
AluBI	AGCT	3 cut(s)	71, 169, 422
AluI	AGCT	3 cut(s)	71, 169, 422
Alw21I	GWGCWC	1 cut(s)	540
ApeKI	GCWGC	3 cut(s)	159, 166, 422
ApoI	RAATTY	1 cut(s)	581
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	3 cut(s)	235, 360, 568
AvaII	GGWCC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	3 cut(s)	146, 178, 409
BccI	CCATC	2 cut(s)	484, 494
BceAI	ACGGC	1 cut(s)	502
BciT130I	CCWGG	3 cut(s)	35, 104, 276
BciVI	GTATCC	1 cut(s)	568
BclI	TGATCA	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	568
BisI	GCNGC	4 cut(s)	160, 167, 194, 423
BlsI	GCNGC	4 cut(s)	161, 168, 195, 424
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	3 cut(s)	35, 104, 276
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	108, 229
BmrFI	CCNGG	3 cut(s)	35, 104, 276
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	3 cut(s)	249, 394, 582
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	3 cut(s)	60, 87, 310
Bse3DI	GCAATG	1 cut(s)	209
BseBI	CCWGG	3 cut(s)	35, 104, 276
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	3 cut(s)	60, 87, 310
BseXI	GCAGC	3 cut(s)	146, 178, 409
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	45, 365
BspACI	CCGC	3 cut(s)	194, 222, 399
BspCNI	CTCAG	1 cut(s)	455
BspLI	GGNNCC	2 cut(s)	108, 229
BspQI	GCTCTTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	3 cut(s)	60, 87, 310
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	45, 365
Bst2UI	CCWGG	3 cut(s)	35, 104, 276
Bst4CI	ACNGT	2 cut(s)	186, 472
Bst6I	CTCTTC	2 cut(s)	276, 545
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	100, 164
BstDEI	CTNAG	2 cut(s)	40, 442
BstF5I	GGATG	1 cut(s)	494
BstKTI	GATC	2 cut(s)	48, 368
BstMBI	GATC	2 cut(s)	45, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	3 cut(s)	35, 104, 276
BstSCI	CCNGG	3 cut(s)	33, 102, 274
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	146, 178, 409
BstV2I	GAAGAC	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	568
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	494
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	203, 317
Cac8I	GCNNGC	2 cut(s)	100, 164
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	3 cut(s)	90, 182, 351
CviAII	CATG	2 cut(s)	49, 111
CviJI	RGCY	8 cut(s)	65, 71, 102, 107, 169, 309, 422, 440
CviKI_1	RGCY	8 cut(s)	65, 71, 102, 107, 169, 309, 422, 440
CviQI	GTAC	3 cut(s)	90, 182, 351
DdeI	CTNAG	2 cut(s)	40, 442
DpnI	GATC	2 cut(s)	47, 367
DpnII	GATC	2 cut(s)	45, 365
DraIII	CACNNNGTG	1 cut(s)	535
Eam1104I	CTCTTC	2 cut(s)	276, 545
EarI	CTCTTC	2 cut(s)	276, 545
EciI	GGCGGA	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	329
Eco57I	CTGAAG	3 cut(s)	327, 420, 438
EcoRII	CCWGG	3 cut(s)	33, 102, 274
FaeI	CATG	2 cut(s)	52, 114
FaiI	YATR	3 cut(s)	50, 112, 248
FatI	CATG	2 cut(s)	48, 110
FauI	CCCGC	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	160, 167, 194, 423
FokI	GGATG	1 cut(s)	481
Fsp4HI	GCNGC	4 cut(s)	160, 167, 194, 423
GluI	GCNGC	4 cut(s)	160, 167, 194, 423
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	52, 114
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	3 cut(s)	235, 360, 568
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	445, 499
Hpy8I	GTNNAC	1 cut(s)	92
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	444, 536
HpyCH4III	ACNGT	2 cut(s)	186, 472
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	84, 407, 425, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	40, 442
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	52, 114
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	45, 365
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	3 cut(s)	146, 178, 409
LweI	GCATC	3 cut(s)	249, 394, 582
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	47, 367
MboI	GATC	2 cut(s)	45, 365
MboII	GAAGA	4 cut(s)	144, 263, 333, 532
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	4 cut(s)	15, 379, 426, 581
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	125, 218, 451, 452, 554
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	35, 104, 276
MvaI	CCWGG	3 cut(s)	35, 104, 276
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	2 cut(s)	45, 365
NlaIII	CATG	2 cut(s)	52, 114
NlaIV	GGNNCC	2 cut(s)	108, 229
PciSI	GCTCTTC	1 cut(s)	545
PkrI	GCNGC	4 cut(s)	161, 168, 195, 424
Psp6I	CCWGG	3 cut(s)	33, 102, 274
PspGI	CCWGG	3 cut(s)	33, 102, 274
PspN4I	GGNNCC	2 cut(s)	108, 229
PspPI	GGNCC	1 cut(s)	329
RsaI	GTAC	3 cut(s)	91, 183, 352
RsaNI	GTAC	3 cut(s)	90, 182, 351
SapI	GCTCTTC	1 cut(s)	545
SatI	GCNGC	4 cut(s)	160, 167, 194, 423
Sau3AI	GATC	2 cut(s)	45, 365
Sau96I	GGNCC	1 cut(s)	329
ScaI	AGTACT	1 cut(s)	352
ScrFI	CCNGG	3 cut(s)	35, 104, 276
SduI	GDGCHC	1 cut(s)	540
SetI	ASST	8 cut(s)	73, 126, 171, 229, 334, 418, 424, 436
SfaNI	GCATC	3 cut(s)	249, 394, 582
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	329
Sse9I	AATT	4 cut(s)	15, 379, 426, 581
SsiI	CCGC	3 cut(s)	194, 222, 399
StyD4I	CCNGG	3 cut(s)	33, 102, 274
TaaI	ACNGT	2 cut(s)	186, 472
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	61
TasI	AATT	4 cut(s)	15, 379, 426, 581
TatI	WGTACW	3 cut(s)	89, 181, 350
TauI	GCSGC	1 cut(s)	196
TscAI	CASTG	2 cut(s)	203, 317
TseI	GCWGC	3 cut(s)	159, 166, 422
TspRI	CASTG	2 cut(s)	203, 317
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	581
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.