Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007713

Physical Location & Seq

Genomic Coordinates Forward (+)

8723 .. 12697

Gene Structure 3975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGCAGCTTCACATATCGCCTAGCATGAGAAGCATTACGATATCGAGCAGCAATGAGTTTATTGATTTGATGAAGATCAAAGTCGCAGCTCGTCACATCTCTTACCGAACTCTCTTCCACACTATCTTAATCCTCGCTTTCTTGTTACCTTTTGTTTTCATCCTAACCGCTGTTGTTACCCTTGAAGGTGTCAACAAGTGCTCCTCTTTTGATTGTTTCGGGAGGCGGCTAGGACCACGTCTTCTTGGTAGGATAGATGATTCAGAGAGACTAGTTAGAGATTTTTACAAAATTCTAAATGAAGTAAGCACTCAAGAAATTCCAGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGGTAGAGAAGTTTGAAAGGGATTTAAGGGAATCCAAATTTGCAGAACTCATGAACAAGCACTTTGCTGCAAGTTCAATTCCAAAAGGAATTCACTGTCTCTCTTTAAGACTAACCGATGAATATTCCTCCAATGCTCATGCCCGGAGACAGCTTCCTTCCCCGGAGCTTCTCCCTGTTCTCTCAGACAATGCTTACCACCATTTTGTTCTAGCTACAGATAATATCTTAGCTGCATCGGTTGTGGTCTCATCTGCTGTTCAATCATCTTCAAAACCCGAGAAAATTGTCTTCCATGTTATCACAGACAAGAAAACCTATGCGGTTCTTGAAGCTGTGGAAAGCCATAACAGTATCAGAAATTATTACCATGGGAATCATATTGCTGGTGCAAACCTCAGCGAAACAACCCCTCGAACATTTGCTTCGAAACTGCAGTCAAGAAGTCCCAAATACATATCTTTGCTCAACCATCTTAGAATATATCTACCAGAGCTTTTTCCGAACTTAGACAAGGTAGTGTTCTTAGATGATGATATAGTGATACAGAAAGATTTATCTCCGCTTTGGGATATTGACCTTAACGGGAAGGTTAATGGAGCTGTGGAGACTTGTCGAGGAGAAGACGTATGGGTTATGTCAAAGCGTCTTAGGAACTACTTCAATTTTTCTCACCCGCTCATCGCAAAGCATTTAGATCCCGAAGAATGTGCTTGGGCTTATGGAATGAATATCTTTGATCTACGGACTTGGAGGAAGACAAATATCAGAGAAACGTATCATTCTTGGCTTAAAGAGAATCTGAAGTCGAATCTAACAATGTGGAAACTTGGAACATTGCCTCCTGCTCTAATAGCATTTAAAGGTCATGTTCAGCCAATAGATTCCTCTTGGCATATGCTTGGATTAGGTTATCAGAGCAAGACCAACTTAGAAAATGCGAAGAAAGCTGCAGTGATTCATTACAATGGCCAATCAAAGCCGTGGCTTGAGATAGGTTTCGAGCATCTCAGACCATTCTGGACAAAATATGTTAACTACTCCAATGATTTCATTAAGAATTGTCATATCTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

499

Amino Acids

57.27

Weight (kDa)

8.87

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	173 - 472	1.7e-74	Glycosyl transferase family 8
Glyco_transf_24	PF18404	300 - 400	4.1e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01040 AT3G01040 AT3G01040 AT5G15470
fragaria_vesca	FvH4_6g47380 FvH4_6g47380 FvH4_6g47380 FvH4_6g47380
malus_domestica	MD00G1171900.v1.1 MD09G1061900.v1.1
prunus_persica	Prupe.3G258200_v2.0.a1
pyrus_communis	pycom111g05220 pycom17g05600
rosa_chinensis	RchiOBHm_Chr2g0166431
rosa_laevigata	RLG00000021618
rosa_multiflora	Rmu_sc0003016.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084910
rosa_rugosa	Rorug02G0522800 Rorug02G0522900 Rorug02G0523000
rosa_samantha	Rh2BG601100 Rh2CG571700 Rh2DG611300
rosa_wichuraiana	Rw2G049080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1099
AciI	CCGC	5 cut(s)	168, 226, 743, 983, 1097
AclWI	GGATC	1 cut(s)	1112
AcoI	YGGCCR	1 cut(s)	1390
AcsI	RAATTY	4 cut(s)	291, 318, 458, 510
AcuI	CTGAAG	1 cut(s)	1244
AgsI	TTSAA	7 cut(s)	185, 437, 498, 683, 693, 752, 1084
AhlI	ACTAGT	1 cut(s)	271
AjiI	CACGTC	1 cut(s)	239
AloI	GAACNNNNNNTCC	2 cut(s)	1246, 1278
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	5 cut(s)	262, 524, 562, 673, 1022
AlwI	GGATC	1 cut(s)	1112
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	1390
ApeKI	GCWGC	6 cut(s)	4, 48, 86, 488, 653, 1370
ApoI	RAATTY	4 cut(s)	291, 318, 458, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	842, 874
Asp700I	GAANNNNTTC	1 cut(s)	1079
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	2 cut(s)	565, 584
AsuHPI	GGTGA	1 cut(s)	1085
AsuII	TTCGAA	1 cut(s)	848
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	1392
BbsI	GAAGAC	4 cut(s)	233, 703, 1050, 1184
Bbv12I	GWGCWC	1 cut(s)	203
BbvCI	CCTCAGC	1 cut(s)	818
BbvI	GCAGC	6 cut(s)	16, 60, 98, 475, 640, 1357
BccI	CCATC	2 cut(s)	320, 900
BceAI	ACGGC	1 cut(s)	1387
BcgI	CGANNNNNNTGC	2 cut(s)	1112, 1146
BcnI	CCSGG	2 cut(s)	565, 584
BcoDI	GTCTC	5 cut(s)	262, 524, 562, 673, 1022
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	4 cut(s)	21, 230, 272, 632
BfmI	CTRYAG	3 cut(s)	636, 854, 1371
BisI	GCNGC	7 cut(s)	5, 49, 87, 227, 489, 654, 1371
BlsI	GCNGC	7 cut(s)	6, 50, 88, 228, 490, 655, 1372
Bme1390I	CCNGG	2 cut(s)	565, 584
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	698
BmgBI	CACGTC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	233
BmrFI	CCNGG	2 cut(s)	565, 584
BmsI	GCATC	3 cut(s)	379, 665, 1435
BpiI	GAAGAC	4 cut(s)	233, 703, 1050, 1184
Bpu10I	CCTNAGC	1 cut(s)	818
Bpu14I	TTCGAA	1 cut(s)	848
BpuEI	CTTGAG	2 cut(s)	297, 1430
BpuMI	CCSGG	2 cut(s)	565, 584
BsaBI	GATNNNNATC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	3 cut(s)	582, 790, 1403
BsaXI	ACNNNNNCTCC	6 cut(s)	185, 215, 1032, 1062, 1246, 1276
Bse1I	ACTGG	1 cut(s)	363
Bse3DI	GCAATG	2 cut(s)	58, 1256
Bse8I	GATNNNNATC	1 cut(s)	74
BseDI	CCNNGG	3 cut(s)	582, 790, 1403
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	74
BseMI	GCAATG	2 cut(s)	58, 1256
BseMII	CTCAG	3 cut(s)	618, 832, 1444
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	2 cut(s)	193, 1053
BseXI	GCAGC	6 cut(s)	16, 60, 98, 475, 640, 1357
BshFI	GGCC	1 cut(s)	1392
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	2 cut(s)	565, 584
BslFI	GGGAC	1 cut(s)	852
BsmAI	GTCTC	5 cut(s)	262, 524, 562, 673, 1022
BsmFI	GGGAC	1 cut(s)	852
BsnI	GGCC	1 cut(s)	1392
Bso31I	GGTCTC	1 cut(s)	673
BsoBI	CYCGRG	1 cut(s)	698
Bsp119I	TTCGAA	1 cut(s)	848
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	75, 1117, 1159
Bsp19I	CCATGG	1 cut(s)	790
BspACI	CCGC	5 cut(s)	168, 226, 743, 983, 1097
BspANI	GGCC	1 cut(s)	1392
BspCNI	CTCAG	3 cut(s)	617, 831, 1443
BspHI	TCATGA	1 cut(s)	471
BspMAI	CTGCAG	2 cut(s)	858, 1375
BspPI	GGATC	1 cut(s)	1112
BspT104I	TTCGAA	1 cut(s)	848
BspTNI	GGTCTC	1 cut(s)	673
BsrBI	CCGCTC	1 cut(s)	1099
BsrDI	GCAATG	2 cut(s)	58, 1256
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	3 cut(s)	582, 790, 1403
BssMI	GATC	3 cut(s)	75, 1117, 1159
BssT1I	CCWWGG	1 cut(s)	790
Bst4CI	ACNGT	2 cut(s)	518, 773
Bst6I	CTCTTC	1 cut(s)	119
BstBI	TTCGAA	1 cut(s)	848
BstDEI	CTNAG	9 cut(s)	604, 649, 818, 896, 928, 946, 1070, 1351, 1430
BstDSI	CCRYGG	2 cut(s)	790, 1403
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	78, 1120, 1162
BstMAI	GTCTC	5 cut(s)	262, 524, 562, 673, 1022
BstMBI	GATC	3 cut(s)	75, 1117, 1159
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 1274, 1367
BstSCI	CCNGG	2 cut(s)	563, 582
BstSFI	CTRYAG	3 cut(s)	636, 854, 1371
BstV1I	GCAGC	6 cut(s)	16, 60, 98, 475, 640, 1357
BstV2I	GAAGAC	4 cut(s)	233, 703, 1050, 1184
BstX2I	RGATCY	1 cut(s)	1117
BstYI	RGATCY	1 cut(s)	1117
BsuRI	GGCC	1 cut(s)	1392
BtgI	CCRYGG	2 cut(s)	790, 1403
BtgZI	GCGATG	1 cut(s)	1087
BtrI	CACGTC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	1380
BtsIMutI	CAGTG	2 cut(s)	514, 1380
CciI	TCATGA	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	1055
CviAII	CATG	6 cut(s)	25, 472, 560, 716, 791, 1289
DdeI	CTNAG	9 cut(s)	604, 649, 818, 896, 928, 946, 1070, 1351, 1430
DpnI	GATC	3 cut(s)	77, 1119, 1161
DpnII	GATC	3 cut(s)	75, 1117, 1159
DraI	TTTAAA	2 cut(s)	333, 1282
EaeI	YGGCCR	1 cut(s)	1390
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	790
Eco31I	GGTCTC	1 cut(s)	673
Eco32I	GATATC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	1244
Eco88I	CYCGRG	1 cut(s)	698
EcoRI	GAATTC	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	790
ErhI	CCWWGG	1 cut(s)	790
FaeI	CATG	6 cut(s)	28, 475, 563, 719, 794, 1292
FalI	AAGNNNNNCTT	2 cut(s)	1334, 1366
FaqI	GGGAC	1 cut(s)	852
FatI	CATG	6 cut(s)	24, 471, 559, 715, 790, 1288
FauI	CCCGC	1 cut(s)	1104
FauNDI	CATATG	1 cut(s)	1317
Fnu4HI	GCNGC	7 cut(s)	5, 49, 87, 227, 489, 654, 1371
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	7 cut(s)	5, 49, 87, 227, 489, 654, 1371
FspBI	CTAG	4 cut(s)	21, 230, 272, 632
GluI	GCNGC	7 cut(s)	5, 49, 87, 227, 489, 654, 1371
HaeIII	GGCC	1 cut(s)	1392
HapII	CCGG	2 cut(s)	565, 584
HgaI	GACGC	1 cut(s)	1055
Hin1II	CATG	6 cut(s)	28, 475, 563, 719, 794, 1292
HincII	GTYRAC	3 cut(s)	193, 356, 1456
HindII	GTYRAC	3 cut(s)	193, 356, 1456
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	8 cut(s)	260, 344, 452, 796, 1219, 1231, 1304, 1378
HpaI	GTTAAC	1 cut(s)	1456
HpaII	CCGG	2 cut(s)	565, 584
HphI	GGTGA	1 cut(s)	1085
Hpy166II	GTNNAC	3 cut(s)	193, 356, 1456
Hpy188I	TCNGA	9 cut(s)	265, 367, 607, 779, 924, 1190, 1224, 1338, 1433
Hpy188III	TCNNGA	9 cut(s)	220, 314, 323, 341, 472, 749, 861, 1121, 1441
Hpy8I	GTNNAC	3 cut(s)	193, 356, 1456
HpyAV	CCTTC	3 cut(s)	179, 588, 1003
HpyCH4III	ACNGT	2 cut(s)	518, 773
HpyCH4IV	ACGT	3 cut(s)	238, 1047, 1196
HpyCH4V	TGCA	7 cut(s)	4, 464, 491, 656, 812, 856, 1373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 1274, 1367
HpyF3I	CTNAG	9 cut(s)	604, 649, 818, 896, 928, 946, 1070, 1351, 1430
HpySE526I	ACGT	3 cut(s)	238, 1047, 1196
Hsp92II	CATG	6 cut(s)	28, 475, 563, 719, 794, 1292
KspAI	GTTAAC	1 cut(s)	1456
Kzo9I	GATC	3 cut(s)	75, 1117, 1159
LmnI	GCTCC	3 cut(s)	206, 586, 1019
Lsp1109I	GCAGC	6 cut(s)	16, 60, 98, 475, 640, 1357
LweI	GCATC	3 cut(s)	379, 665, 1435
MaeI	CTAG	4 cut(s)	21, 230, 272, 632
MaeII	ACGT	3 cut(s)	238, 1047, 1196
MaeIII	GTNAC	3 cut(s)	92, 144, 175
MalI	GATC	3 cut(s)	77, 1119, 1161
MbiI	CCGCTC	1 cut(s)	1099
MboI	GATC	3 cut(s)	75, 1117, 1159
MflI	RGATCY	1 cut(s)	1117
MhlI	GDGCHC	1 cut(s)	203
MlsI	TGGCCA	1 cut(s)	1392
MluCI	AATT	9 cut(s)	291, 318, 458, 498, 510, 705, 781, 1084, 1480
MluNI	TGGCCA	1 cut(s)	1392
MlyI	GAGTC	1 cut(s)	353
Mox20I	TGGCCA	1 cut(s)	1392
MroXI	GAANNNNTTC	1 cut(s)	1079
MscI	TGGCCA	1 cut(s)	1392
MslI	CAYNNNNRTG	2 cut(s)	387, 1386
Msp20I	TGGCCA	1 cut(s)	1392
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	565, 584
MspR9I	CCNGG	2 cut(s)	565, 584
MwoI	GCNNNNNNNGC	3 cut(s)	30, 1274, 1367
NciI	CCSGG	2 cut(s)	565, 584
NcoI	CCATGG	1 cut(s)	790
NdeI	CATATG	1 cut(s)	1317
NdeII	GATC	3 cut(s)	75, 1117, 1159
NlaIII	CATG	6 cut(s)	28, 475, 563, 719, 794, 1292
NmuCI	GTSAC	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	848
PagI	TCATGA	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	1079
PfeI	GAWTC	7 cut(s)	260, 452, 796, 1219, 1231, 1304, 1378
PflFI	GACNNNGTC	1 cut(s)	237
PkrI	GCNGC	7 cut(s)	6, 50, 88, 228, 490, 655, 1372
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	2 cut(s)	858, 1375
PsuI	RGATCY	1 cut(s)	1117
PsyI	GACNNNGTC	1 cut(s)	237
RseI	CAYNNNNRTG	2 cut(s)	387, 1386
SatI	GCNGC	7 cut(s)	5, 49, 87, 227, 489, 654, 1371
Sau3AI	GATC	3 cut(s)	75, 1117, 1159
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	565, 584
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	3 cut(s)	379, 665, 1435
SfcI	CTRYAG	3 cut(s)	636, 854, 1371
SfuI	TTCGAA	1 cut(s)	848
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	387, 1386
SmlI	CTYRAG	2 cut(s)	312, 1409
SmoI	CTYRAG	2 cut(s)	312, 1409
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	9 cut(s)	291, 318, 458, 498, 510, 705, 781, 1084, 1480
SsiI	CCGC	5 cut(s)	168, 226, 743, 983, 1097
SspI	AATATT	1 cut(s)	545
SspMI	CTAG	4 cut(s)	21, 230, 272, 632
StyD4I	CCNGG	2 cut(s)	563, 582
StyI	CCWWGG	1 cut(s)	790
TaaI	ACNGT	2 cut(s)	518, 773
TaiI	ACGT	3 cut(s)	241, 1050, 1199
TaqI	TCGA	7 cut(s)	44, 415, 835, 848, 1036, 1229, 1422
TasI	AATT	9 cut(s)	291, 318, 458, 498, 510, 705, 781, 1084, 1480
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	7 cut(s)	260, 452, 796, 1219, 1231, 1304, 1378
TscAI	CASTG	2 cut(s)	521, 1380
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	6 cut(s)	4, 48, 86, 488, 653, 1370
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	9 cut(s)	86, 148, 315, 386, 488, 555, 1163, 1370, 1462
TspGWI	ACGGA	1 cut(s)	1180
TspRI	CASTG	2 cut(s)	521, 1380
Tth111I	GACNNNGTC	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	4 cut(s)	291, 318, 458, 510
XmnI	GAANNNNTTC	1 cut(s)	1079
XspI	CTAG	4 cut(s)	21, 230, 272, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.