Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007713

Physical Location & Seq

Genomic Coordinates Forward (+)

75132478 .. 75138446

Gene Structure 5969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG571700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGCAGCACTTTGATATTGAACTTGTGATTTCATTGTTGCTTTACTCCCCCATTTCAGATTGTTTAGGTAGGCGCTTGGGACCAAGGCTTCTTGGTAGGGTTGATGATTCAGGGAGACTGGTTAGAGACTTTTACAAGATTCTCAACCAAGTGAACACTGAAGAAATCCCAGCTGGTCTAAAGCTGCCAAATTCATTTAATAAACTTGTTTCTGAGATGAAGAACAACCAGTATGATGCAAGGACCTTTGCTTTCATGCTAAGAGCCATGATGGAGAATTTTGAAAAGGAAATCAGAGAGTCTAAGTTTTCAGAGCTGATGAACAAACACTTTGCGGCAAGTTCTGTACCCAAAGGCATCCACTGTCTGTCTTTGCGTTTGACTGATGAATATTCATCCAATGCTCATGCCAGGAAGCAATTGCCTCCTCCAGAGTTACTTCCATTACTGTCTGACAACTCTTACCACCACTTTATCCTATCAACTGATAACATCTTGGCTGCTTCAGTTGTTGTTGCATCTGCTGTCCAGACATCTCTCAAACCTGAAAAGATAGTCTTCCATGTCATTACTGACAAGAAAACTTACGCTGGCATGCACTCATGGTTTGCACTAAACCCTGTCTCCCCTGCTATTGTTGAAGTGAAAGGTGTCCACCAGTTTGATTGGTTAACAAGAGAAAATGTTCCAGTCCTTGAAGCTGTTGAAAATCAAAATGGGATCAGGGATTATTACCATGGGAATCATCTTGCTGGGGCCAATCTCAGTGCTACAACTCCACGAACTTTCGCATCAAAATTGCAGGCTAGAAGTCCCAAATACATATCCTTACTCAACCATCTTCGCATATATTTACCTGAGCTCTTCCCGAATCTTGACAAGGTGGTTTTCCTAGATGATGATGTTGTGATTCAGCGAGATTTATCGCCACTTTGGGACATTGACCTTGGGGGAAAGGTCAATGGAGCTGTTGAAACTTGTAAAGGTGAAGATGAGTGGGTAATGTCCAAGCGATTCAGGAACTACTTCAATTTTTCCCATCCCCTCGTAGCAAAGAATTTGGACCCTGAAGAATGTGCATGGGCTTATGGGATGAATATCTTTGATCTTAGTGCCTGGAGAAAGACAAATATAAGAGAGACTTATCATTCCTGGCTGAAAGAGAATCTGAAGTCAAACCTCACGATATGGAAGCTTGGAACCCTACCACCAGCTTTAATTGCATTTAGAGGTCATGTTCACTCAATTGATCCATCATGGCACATGCTTGGATTGGGTTATCAAAATAACACCAATATTGAAAAGGTTGAGAAGGCTGCAGTTATCCACTATAATGGTCAGTCAAAACCCTGGTTGCAGATTGGCTTTGATCATCTTCGGCCATTCTGGACCAAATACGTCAATTACTCCAATGATTTTGTTAGGAACTGCCACATCTTGGAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

482

Amino Acids

55.26

Weight (kDa)

7.74

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	122 - 454	1.3e-77	Glycosyl transferase family 8
Glyco_transf_24	PF18404	282 - 335	5.6e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01040 AT3G01040 AT3G01040 AT5G15470
fragaria_vesca	FvH4_6g47380 FvH4_6g47380 FvH4_6g47380 FvH4_6g47380
malus_domestica	MD00G1171900.v1.1 MD09G1061900.v1.1
prunus_persica	Prupe.3G258200_v2.0.a1
pyrus_communis	pycom111g05220 pycom17g05600
rosa_chinensis	RchiOBHm_Chr2g0166431
rosa_laevigata	RLG00000021618
rosa_multiflora	Rmu_sc0003016.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084910
rosa_rugosa	Rorug02G0522800 Rorug02G0522900 Rorug02G0523000
rosa_samantha	Rh2BG601100 Rh2CG571700 Rh2DG611300
rosa_wichuraiana	Rw2G049080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1438
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	2 cut(s)	728, 1244
AcoI	YGGCCR	1 cut(s)	1379
AcsI	RAATTY	3 cut(s)	190, 277, 1057
AcuI	CTGAAG	4 cut(s)	180, 489, 1089, 1190
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	1438
AgsI	TTSAA	8 cut(s)	20, 284, 641, 698, 707, 974, 1030, 1301
AjnI	CCWGG	4 cut(s)	410, 1115, 1151, 1349
AluBI	AGCT	8 cut(s)	173, 184, 316, 701, 862, 968, 1195, 1214
AluI	AGCT	8 cut(s)	173, 184, 316, 701, 862, 968, 1195, 1214
Alw21I	GWGCWC	1 cut(s)	864
Alw26I	GTCTC	4 cut(s)	109, 120, 628, 1133
AlwI	GGATC	2 cut(s)	728, 1244
AoxI	GGCC	2 cut(s)	756, 1379
ApeKI	GCWGC	4 cut(s)	4, 184, 500, 1316
ApoI	RAATTY	3 cut(s)	190, 277, 1057
Asp700I	GAANNNNTTC	2 cut(s)	684, 1025
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	5 cut(s)	80, 243, 756, 1063, 1389
AsuHPI	GGTGA	1 cut(s)	998
AvaII	GGWCC	4 cut(s)	80, 243, 1063, 1389
BanII	GRGCYC	1 cut(s)	864
BbsI	GAAGAC	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	864
BbvI	GCAGC	4 cut(s)	16, 171, 487, 1303
BccI	CCATC	4 cut(s)	265, 846, 1047, 1261
BciT130I	CCWGG	4 cut(s)	412, 1117, 1153, 1351
BclI	TGATCA	1 cut(s)	1369
BcoDI	GTCTC	4 cut(s)	109, 120, 628, 1133
BfaI	CTAG	2 cut(s)	807, 893
BfmI	CTRYAG	1 cut(s)	1317
BfoI	RGCGCY	1 cut(s)	76
BisI	GCNGC	5 cut(s)	5, 185, 336, 501, 1317
BlsI	GCNGC	5 cut(s)	6, 186, 337, 502, 1318
Bme1390I	CCNGG	4 cut(s)	412, 1117, 1153, 1351
Bme18I	GGWCC	4 cut(s)	80, 243, 1063, 1389
BmgT120I	GGNCC	5 cut(s)	80, 243, 756, 1063, 1389
BmiI	GGNNCC	4 cut(s)	81, 757, 1065, 1201
BmrFI	CCNGG	4 cut(s)	412, 1117, 1153, 1351
BmsI	GCATC	4 cut(s)	226, 366, 527, 800
BpiI	GAAGAC	1 cut(s)	550
BpmI	CTGGAG	2 cut(s)	414, 1138
Bpu10I	CCTNAGC	1 cut(s)	858
BsaBI	GATNNNNATC	1 cut(s)	1097
BsaJI	CCNNGG	4 cut(s)	83, 736, 946, 1349
BsaXI	ACNNNNNCTCC	2 cut(s)	608, 638
Bsc4I	CCNNNNNNNGG	1 cut(s)	1438
Bse1I	ACTGG	4 cut(s)	123, 229, 658, 689
Bse8I	GATNNNNATC	1 cut(s)	1097
BseBI	CCWGG	4 cut(s)	412, 1117, 1153, 1351
BseDI	CCNNGG	4 cut(s)	83, 736, 946, 1349
BseGI	GGATG	4 cut(s)	357, 395, 1039, 1098
BseJI	GATNNNNATC	1 cut(s)	1097
BseLI	CCNNNNNNNGG	1 cut(s)	1438
BseMII	CTCAG	3 cut(s)	204, 778, 849
BseNI	ACTGG	4 cut(s)	123, 229, 658, 689
BseRI	GAGGAG	1 cut(s)	417
BseXI	GCAGC	4 cut(s)	16, 171, 487, 1303
BseYI	CCCAGC	2 cut(s)	169, 752
BshFI	GGCC	2 cut(s)	758, 1381
BsiHKAI	GWGCWC	1 cut(s)	864
BslFI	GGGAC	3 cut(s)	93, 798, 950
BslI	CCNNNNNNNGG	1 cut(s)	1438
BsmAI	GTCTC	4 cut(s)	109, 120, 628, 1133
BsmFI	GGGAC	3 cut(s)	93, 798, 950
BsnI	GGCC	2 cut(s)	758, 1381
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	4 cut(s)	720, 1105, 1249, 1369
Bsp19I	CCATGG	1 cut(s)	736
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	2 cut(s)	758, 1381
BspCNI	CTCAG	3 cut(s)	205, 777, 850
BspLI	GGNNCC	4 cut(s)	81, 757, 1065, 1201
BspMAI	CTGCAG	1 cut(s)	1321
BspPI	GGATC	2 cut(s)	728, 1244
BspQI	GCTCTTC	1 cut(s)	869
BsrI	ACTGG	4 cut(s)	123, 229, 658, 689
BssECI	CCNNGG	4 cut(s)	83, 736, 946, 1349
BssMI	GATC	4 cut(s)	720, 1105, 1249, 1369
BssT1I	CCWWGG	3 cut(s)	83, 736, 946
Bst2UI	CCWGG	4 cut(s)	412, 1117, 1153, 1351
Bst4CI	ACNGT	2 cut(s)	365, 450
Bst6I	CTCTTC	1 cut(s)	869
BstC8I	GCNNGC	3 cut(s)	592, 596, 804
BstDEI	CTNAG	6 cut(s)	213, 260, 303, 764, 858, 1109
BstDSI	CCRYGG	1 cut(s)	736
BstF5I	GGATG	4 cut(s)	357, 395, 1039, 1098
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	4 cut(s)	723, 1108, 1252, 1372
BstMAI	GTCTC	4 cut(s)	109, 120, 628, 1133
BstMBI	GATC	4 cut(s)	720, 1105, 1249, 1369
BstMWI	GCNNNNNNNGC	1 cut(s)	1220
BstNI	CCWGG	4 cut(s)	412, 1117, 1153, 1351
BstNSI	RCATGY	2 cut(s)	598, 1267
BstSCI	CCNGG	4 cut(s)	410, 1115, 1151, 1349
BstSFI	CTRYAG	1 cut(s)	1317
BstV1I	GCAGC	4 cut(s)	16, 171, 487, 1303
BstV2I	GAAGAC	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	1334
BsuRI	GGCC	2 cut(s)	758, 1381
BtgI	CCRYGG	1 cut(s)	736
BtsCI	GGATG	4 cut(s)	357, 395, 1039, 1098
BtsIMutI	CAGTG	3 cut(s)	156, 361, 772
Cac8I	GCNNGC	3 cut(s)	592, 596, 804
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	5 cut(s)	80, 243, 756, 1063, 1389
Csp6I	GTAC	1 cut(s)	347
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	6 cut(s)	213, 260, 303, 764, 858, 1109
DpnI	GATC	4 cut(s)	722, 1107, 1251, 1371
DpnII	GATC	4 cut(s)	720, 1105, 1249, 1369
EaeI	YGGCCR	1 cut(s)	1379
Eam1104I	CTCTTC	1 cut(s)	869
EarI	CTCTTC	1 cut(s)	869
Ecl136II	GAGCTC	1 cut(s)	862
Eco130I	CCWWGG	3 cut(s)	83, 736, 946
Eco24I	GRGCYC	1 cut(s)	864
Eco47I	GGWCC	4 cut(s)	80, 243, 1063, 1389
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	4 cut(s)	180, 489, 1089, 1190
EcoICRI	GAGCTC	1 cut(s)	862
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	4 cut(s)	410, 1115, 1151, 1349
EcoT14I	CCWWGG	3 cut(s)	83, 736, 946
EcoT38I	GRGCYC	1 cut(s)	864
ErhI	CCWWGG	3 cut(s)	83, 736, 946
FalI	AAGNNNNNCTT	4 cut(s)	542, 574, 1126, 1158
FaqI	GGGAC	3 cut(s)	93, 798, 950
FbaI	TGATCA	1 cut(s)	1369
Fnu4HI	GCNGC	5 cut(s)	5, 185, 336, 501, 1317
FokI	GGATG	4 cut(s)	344, 382, 1026, 1105
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	5 cut(s)	5, 185, 336, 501, 1317
FspBI	CTAG	2 cut(s)	807, 893
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	5 cut(s)	5, 185, 336, 501, 1317
GsaI	CCCAGC	2 cut(s)	173, 756
GsuI	CTGGAG	2 cut(s)	414, 1138
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	2 cut(s)	758, 1381
HhaI	GCGC	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HindIII	AAGCTT	1 cut(s)	1193
HinfI	GANTC	9 cut(s)	107, 139, 299, 742, 871, 910, 1014, 1165, 1442
HpaI	GTTAAC	1 cut(s)	672
HphI	GGTGA	1 cut(s)	998
Hpy166II	GTNNAC	4 cut(s)	154, 655, 672, 1240
Hpy188I	TCNGA	6 cut(s)	58, 214, 296, 313, 454, 1170
Hpy188III	TCNNGA	7 cut(s)	431, 529, 868, 875, 1018, 1183, 1387
Hpy8I	GTNNAC	4 cut(s)	154, 655, 672, 1240
HpyAV	CCTTC	1 cut(s)	1306
HpyCH4III	ACNGT	2 cut(s)	365, 450
HpyCH4IV	ACGT	1 cut(s)	1398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1220
HpyF3I	CTNAG	6 cut(s)	213, 260, 303, 764, 858, 1109
HpySE526I	ACGT	1 cut(s)	1398
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	1369
KspAI	GTTAAC	1 cut(s)	672
Kzo9I	GATC	4 cut(s)	720, 1105, 1249, 1369
LguI	GCTCTTC	1 cut(s)	869
LmnI	GCTCC	1 cut(s)	965
Lsp1109I	GCAGC	4 cut(s)	16, 171, 487, 1303
LweI	GCATC	4 cut(s)	226, 366, 527, 800
MaeI	CTAG	2 cut(s)	807, 893
MaeII	ACGT	1 cut(s)	1398
MaeIII	GTNAC	1 cut(s)	435
MalI	GATC	4 cut(s)	722, 1107, 1251, 1371
MboI	GATC	4 cut(s)	720, 1105, 1249, 1369
MboII	GAAGA	8 cut(s)	173, 232, 550, 833, 856, 1001, 1082, 1367
MfeI	CAATTG	2 cut(s)	419, 1245
MhlI	GDGCHC	1 cut(s)	864
MluCI	AATT	9 cut(s)	190, 277, 419, 797, 1030, 1057, 1218, 1245, 1402
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	5 cut(s)	435, 438, 1055, 1190, 1223
MroXI	GAANNNNTTC	2 cut(s)	684, 1025
MseI	TTAA	3 cut(s)	198, 671, 1217
MslI	CAYNNNNRTG	1 cut(s)	1332
MspA1I	CMGCKG	1 cut(s)	173
MspR9I	CCNGG	4 cut(s)	412, 1117, 1153, 1351
MunI	CAATTG	2 cut(s)	419, 1245
MvaI	CCWGG	4 cut(s)	412, 1117, 1153, 1351
MwoI	GCNNNNNNNGC	1 cut(s)	1220
NcoI	CCATGG	1 cut(s)	736
NdeII	GATC	4 cut(s)	720, 1105, 1249, 1369
NlaIV	GGNNCC	4 cut(s)	81, 757, 1065, 1201
NspI	RCATGY	2 cut(s)	598, 1267
PaeI	GCATGC	1 cut(s)	598
PciSI	GCTCTTC	1 cut(s)	869
PdmI	GAANNNNTTC	2 cut(s)	684, 1025
PfeI	GAWTC	7 cut(s)	107, 139, 742, 871, 910, 1014, 1165
PflMI	CCANNNNNTGG	1 cut(s)	1438
PkrI	GCNGC	5 cut(s)	6, 186, 337, 502, 1318
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	864
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	4 cut(s)	410, 1115, 1151, 1349
PspFI	CCCAGC	2 cut(s)	169, 752
PspGI	CCWGG	4 cut(s)	410, 1115, 1151, 1349
PspN4I	GGNNCC	4 cut(s)	81, 757, 1065, 1201
PspPI	GGNCC	5 cut(s)	80, 243, 756, 1063, 1389
PspPPI	RGGWCCY	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	1321
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	1332
SacI	GAGCTC	1 cut(s)	864
SapI	GCTCTTC	1 cut(s)	869
SaqAI	TTAA	3 cut(s)	198, 671, 1217
SatI	GCNGC	5 cut(s)	5, 185, 336, 501, 1317
Sau3AI	GATC	4 cut(s)	720, 1105, 1249, 1369
Sau96I	GGNCC	5 cut(s)	80, 243, 756, 1063, 1389
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	4 cut(s)	412, 1117, 1153, 1351
SduI	GDGCHC	1 cut(s)	864
SfaNI	GCATC	4 cut(s)	226, 366, 527, 800
SfcI	CTRYAG	1 cut(s)	1317
SinI	GGWCC	4 cut(s)	80, 243, 1063, 1389
SmiMI	CAYNNNNRTG	1 cut(s)	1332
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	9 cut(s)	190, 277, 419, 797, 1030, 1057, 1218, 1245, 1402
SsiI	CCGC	1 cut(s)	335
SspI	AATATT	2 cut(s)	392, 1297
SspMI	CTAG	2 cut(s)	807, 893
SstI	GAGCTC	1 cut(s)	864
StyD4I	CCNGG	4 cut(s)	410, 1115, 1151, 1349
StyI	CCWWGG	3 cut(s)	83, 736, 946
TaaI	ACNGT	2 cut(s)	365, 450
TaiI	ACGT	1 cut(s)	1401
TasI	AATT	9 cut(s)	190, 277, 419, 797, 1030, 1057, 1218, 1245, 1402
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	7 cut(s)	107, 139, 742, 871, 910, 1014, 1165
Tru1I	TTAA	3 cut(s)	198, 671, 1217
Tru9I	TTAA	3 cut(s)	198, 671, 1217
TscAI	CASTG	3 cut(s)	163, 368, 772
TseI	GCWGC	4 cut(s)	4, 184, 500, 1316
TspDTI	ATGAA	8 cut(s)	21, 183, 233, 244, 335, 384, 402, 1109
TspRI	CASTG	3 cut(s)	163, 368, 772
Van91I	CCANNNNNTGG	1 cut(s)	1438
VpaK11BI	GGWCC	4 cut(s)	80, 243, 1063, 1389
XapI	RAATTY	3 cut(s)	190, 277, 1057
XceI	RCATGY	2 cut(s)	598, 1267
XmnI	GAANNNNTTC	2 cut(s)	684, 1025
XspI	CTAG	2 cut(s)	807, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.