Rw2G049080

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
76591302 .. 76596236
4935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G049080.1

Sequence Viewer

Length: 1602 bp
ATGCAGCTTCACTTCTCGCCGAGCATGAGAAGCATAACGATCTCGAGCAGCAATGGGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTATAGAACAGTCTTCCACACCATTCTAGTCCTCGCTTTCTTGTTGCCCTTTGTCTTCATTCTCACTGCTGTTGTTACTCTTGAAGGTGTCAACAAGTGCTCCTCATTTGATTGTTTAGGTAGGCGCTTGGGACCAAGGCTTCTTGGTAGGGTTGATGATTCAGGGAGACTGGTTAGAGACTTTTACAAGATTCTCAACCAAGTGAACACTGAAGAAATCCCAGCTGGTCTAAAGCTGCCAAATTCATTTAATAAACTTGTTTCTGAGATGAAGAACAACCAGTATGATGCAAGGACCTTTGCTTTCATGCTAAGAGCCATGATGGAGAATTTTGAAAAGGAAATCAGAGAGTCTAAGTTTTCAGAGCTGATGAACAAACACTTTGCGGCAAGTTCTGTACCCAAAGGCATCCACTGTCTGTCTTTGCGTTTGACTGATGAATATTCATCCAATGCTCATGCCAGGAAGCAATTGCCTCCTCCAGAGTTACTTCCGTTACTCTCTGACAACTCGTACCACCACTTTATCCTATCAACTGATAACATCTTGGCTGCTTCAGTTGTTGTTGCATCTGCTGTCCAGACATCTCTCAAACCTGAAAAGATAGTCTTCCATGTCATTACTGACAAGAAAACTTATGCTGGCATGCACTCATGGTTTGCACTAAACCCTGTCTCCCCTGCTATTGTTGAAGTGAAAGGTGTCCACCAGTTTGATTGGTTAACAAGAGAAAATGTTCCAGTCCTTGAAGCTGTTGAAAATCAAAATGGGATCAGGGATTATTACCATGGGAATCATCTTGCTGGGGCCAATCTCAGTGCTACAACTCCACGAACTTTCGCATCAAAATTGCAGGCTAGAAGTCCCAAATACATATCCTTACTCAACCATCTTCGCATATATTTACCTGAGCTCTTCCCGAATCTTGACAAGGTGGTTTTCCTAGATGATGATGTTGTGATTCAGCGAGATTTATCGCCTCTTTGGGACATTGACCTTGGGGGAAAGGTCAATGGAGCTGTTGAAACTTGTAAAGGTGAAGATGAGTGGGTAATGTCCAAGCGATTCAGGAACTACTTCAATTTTTCCCATCCCCTTGTAGCAAAGAATTTGGACCCTGAAGAATGTGCATGGGCTTATGGGATGAATATCTTTGATCTTAGTGCCTGGAGAAAGACAAATATAAGAGAGACTTATCATTCCTGGCTGAAAGAGAATCTGAAGTCAAACCTCACGATATGGAAGCTTGGAACCCTACCACCAGCTTTAATTGCATTTAGAGGTCATGTTCACTCAATTGATCCATCATGGCACATGCTTGGATTGGGTTATCAAAATAACACCAATATTGAAAGGGTTGAGAAGGCTGCAGTTATCCACTATAATGGTCAGTCAAAACCCTGGTTGCAGATTGGCTTTGATCATCTTCGGCCATTCTGGACCAAATACGTCAATTACTCCAATGATTTTGTTAGGAACTGCCACATCTTGGAGTCATAG

Protein Analysis

533

Amino Acids

60.92

Weight (kDa)

8.88

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 173 - 505 3.4e-77 Glycosyl transferase family 8
Glyco_transf_24 PF18404 333 - 386 7e-06 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1591
AciI CCGC 1 cut(s) 488
AclWI GGATC 2 cut(s) 881, 1397
AcoI YGGCCR 1 cut(s) 1532
AcsI RAATTY 3 cut(s) 343, 430, 1210
AcuI CTGAAG 4 cut(s) 333, 642, 1242, 1343
AfaI GTAC 2 cut(s) 501, 617
AfiI CCNNNNNNNGG 1 cut(s) 1591
AgsI TTSAA 8 cut(s) 185, 437, 794, 851, 860, 1127, 1183, 1454
AjnI CCWGG 4 cut(s) 563, 1268, 1304, 1502
Alw21I GWGCWC 2 cut(s) 203, 1017
Alw26I GTCTC 4 cut(s) 262, 273, 781, 1286
AlwI GGATC 2 cut(s) 881, 1397
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 2 cut(s) 909, 1532
ApeKI GCWGC 6 cut(s) 4, 48, 86, 337, 653, 1469
ApoI RAATTY 3 cut(s) 343, 430, 1210
Asp700I GAANNNNTTC 2 cut(s) 837, 1178
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 5 cut(s) 233, 396, 909, 1216, 1542
AsuHPI GGTGA 1 cut(s) 1151
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 4 cut(s) 233, 396, 1216, 1542
BanII GRGCYC 1 cut(s) 1017
BbsI GAAGAC 3 cut(s) 106, 148, 703
Bbv12I GWGCWC 2 cut(s) 203, 1017
BbvI GCAGC 6 cut(s) 16, 60, 98, 324, 640, 1456
BccI CCATC 4 cut(s) 418, 999, 1200, 1414
BciT130I CCWGG 4 cut(s) 565, 1270, 1306, 1504
BclI TGATCA 1 cut(s) 1522
BcoDI GTCTC 4 cut(s) 262, 273, 781, 1286
BfaI CTAG 3 cut(s) 128, 960, 1046
BfmI CTRYAG 1 cut(s) 1470
BfoI RGCGCY 1 cut(s) 229
BisI GCNGC 7 cut(s) 5, 49, 87, 338, 489, 654, 1470
BlsI GCNGC 7 cut(s) 6, 50, 88, 339, 490, 655, 1471
Bme1390I CCNGG 4 cut(s) 565, 1270, 1306, 1504
Bme18I GGWCC 4 cut(s) 233, 396, 1216, 1542
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 5 cut(s) 233, 396, 909, 1216, 1542
BmiI GGNNCC 4 cut(s) 234, 910, 1218, 1354
BmrFI CCNGG 4 cut(s) 565, 1270, 1306, 1504
BmsI GCATC 4 cut(s) 379, 519, 680, 953
BpiI GAAGAC 3 cut(s) 106, 148, 703
BpmI CTGGAG 2 cut(s) 567, 1291
Bpu10I CCTNAGC 1 cut(s) 1011
BsaBI GATNNNNATC 2 cut(s) 74, 1250
BsaJI CCNNGG 4 cut(s) 236, 889, 1099, 1502
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 761, 791
Bsc4I CCNNNNNNNGG 1 cut(s) 1591
Bse1I ACTGG 4 cut(s) 276, 382, 811, 842
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 2 cut(s) 74, 1250
BseBI CCWGG 4 cut(s) 565, 1270, 1306, 1504
BseDI CCNNGG 4 cut(s) 236, 889, 1099, 1502
BseGI GGATG 4 cut(s) 510, 548, 1192, 1251
BseJI GATNNNNATC 2 cut(s) 74, 1250
BseLI CCNNNNNNNGG 1 cut(s) 1591
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 3 cut(s) 357, 931, 1002
BseNI ACTGG 4 cut(s) 276, 382, 811, 842
BseRI GAGGAG 2 cut(s) 193, 570
BseXI GCAGC 6 cut(s) 16, 60, 98, 324, 640, 1456
BseYI CCCAGC 2 cut(s) 322, 905
BshFI GGCC 2 cut(s) 911, 1534
BsiHKAI GWGCWC 2 cut(s) 203, 1017
BsiHKCI CYCGRG 1 cut(s) 43
BslFI GGGAC 3 cut(s) 246, 951, 1103
BslI CCNNNNNNNGG 1 cut(s) 1591
BsmAI GTCTC 4 cut(s) 262, 273, 781, 1286
BsmFI GGGAC 3 cut(s) 246, 951, 1103
BsnI GGCC 2 cut(s) 911, 1534
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 203, 1017
Bsp143I GATC 6 cut(s) 39, 75, 873, 1258, 1402, 1522
Bsp19I CCATGG 1 cut(s) 889
BspACI CCGC 1 cut(s) 488
BspANI GGCC 2 cut(s) 911, 1534
BspCNI CTCAG 3 cut(s) 358, 930, 1003
BspLI GGNNCC 4 cut(s) 234, 910, 1218, 1354
BspMAI CTGCAG 1 cut(s) 1474
BspPI GGATC 2 cut(s) 881, 1397
BspQI GCTCTTC 1 cut(s) 1022
BsrDI GCAATG 1 cut(s) 58
BsrI ACTGG 4 cut(s) 276, 382, 811, 842
BssECI CCNNGG 4 cut(s) 236, 889, 1099, 1502
BssMI GATC 6 cut(s) 39, 75, 873, 1258, 1402, 1522
BssT1I CCWWGG 3 cut(s) 236, 889, 1099
Bst2UI CCWGG 4 cut(s) 565, 1270, 1306, 1504
Bst4CI ACNGT 2 cut(s) 112, 518
Bst6I CTCTTC 1 cut(s) 1022
BstC8I GCNNGC 3 cut(s) 745, 749, 957
BstDEI CTNAG 6 cut(s) 366, 413, 456, 917, 1011, 1262
BstDSI CCRYGG 1 cut(s) 889
BstF5I GGATG 4 cut(s) 510, 548, 1192, 1251
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 6 cut(s) 42, 78, 876, 1261, 1405, 1525
BstMAI GTCTC 4 cut(s) 262, 273, 781, 1286
BstMBI GATC 6 cut(s) 39, 75, 873, 1258, 1402, 1522
BstMWI GCNNNNNNNGC 2 cut(s) 30, 1373
BstNI CCWGG 4 cut(s) 565, 1270, 1306, 1504
BstNSI RCATGY 2 cut(s) 751, 1420
BstSCI CCNGG 4 cut(s) 563, 1268, 1304, 1502
BstSFI CTRYAG 1 cut(s) 1470
BstV1I GCAGC 6 cut(s) 16, 60, 98, 324, 640, 1456
BstV2I GAAGAC 3 cut(s) 106, 148, 703
BstXI CCANNNNNNTGG 1 cut(s) 1487
BsuRI GGCC 2 cut(s) 911, 1534
BtgI CCRYGG 1 cut(s) 889
BtsCI GGATG 4 cut(s) 510, 548, 1192, 1251
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 4 cut(s) 165, 309, 514, 925
Cac8I GCNNGC 3 cut(s) 745, 749, 957
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 5 cut(s) 233, 396, 909, 1216, 1542
Csp6I GTAC 2 cut(s) 500, 616
CviQI GTAC 2 cut(s) 500, 616
DdeI CTNAG 6 cut(s) 366, 413, 456, 917, 1011, 1262
DpnI GATC 6 cut(s) 41, 77, 875, 1260, 1404, 1524
DpnII GATC 6 cut(s) 39, 75, 873, 1258, 1402, 1522
EaeI YGGCCR 1 cut(s) 1532
Eam1104I CTCTTC 1 cut(s) 1022
EarI CTCTTC 1 cut(s) 1022
Ecl136II GAGCTC 1 cut(s) 1015
Eco130I CCWWGG 3 cut(s) 236, 889, 1099
Eco24I GRGCYC 1 cut(s) 1017
Eco47I GGWCC 4 cut(s) 233, 396, 1216, 1542
Eco53kI GAGCTC 1 cut(s) 1015
Eco57I CTGAAG 4 cut(s) 333, 642, 1242, 1343
Eco88I CYCGRG 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 1015
EcoO109I RGGNCCY 1 cut(s) 396
EcoRII CCWGG 4 cut(s) 563, 1268, 1304, 1502
EcoT14I CCWWGG 3 cut(s) 236, 889, 1099
EcoT38I GRGCYC 1 cut(s) 1017
ErhI CCWWGG 3 cut(s) 236, 889, 1099
FalI AAGNNNNNCTT 4 cut(s) 695, 727, 1279, 1311
FaqI GGGAC 3 cut(s) 246, 951, 1103
FbaI TGATCA 1 cut(s) 1522
Fnu4HI GCNGC 7 cut(s) 5, 49, 87, 338, 489, 654, 1470
FokI GGATG 4 cut(s) 497, 535, 1179, 1258
FriOI GRGCYC 1 cut(s) 1017
Fsp4HI GCNGC 7 cut(s) 5, 49, 87, 338, 489, 654, 1470
FspBI CTAG 3 cut(s) 128, 960, 1046
GlaI GCGC 1 cut(s) 227
GluI GCNGC 7 cut(s) 5, 49, 87, 338, 489, 654, 1470
GsaI CCCAGC 2 cut(s) 326, 909
GsuI CTGGAG 2 cut(s) 567, 1291
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 911, 1534
HhaI GCGC 1 cut(s) 228
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 2 cut(s) 193, 825
HindII GTYRAC 2 cut(s) 193, 825
HindIII AAGCTT 1 cut(s) 1346
HinfI GANTC 9 cut(s) 260, 292, 452, 895, 1024, 1063, 1167, 1318, 1595
HpaI GTTAAC 1 cut(s) 825
HphI GGTGA 1 cut(s) 1151
Hpy166II GTNNAC 5 cut(s) 193, 307, 808, 825, 1393
Hpy188I TCNGA 5 cut(s) 367, 449, 466, 607, 1323
Hpy188III TCNNGA 9 cut(s) 43, 182, 584, 682, 1021, 1028, 1171, 1336, 1540
Hpy8I GTNNAC 5 cut(s) 193, 307, 808, 825, 1393
HpyAV CCTTC 2 cut(s) 179, 1459
HpyCH4III ACNGT 2 cut(s) 112, 518
HpyCH4IV ACGT 1 cut(s) 1551
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 1373
HpyF3I CTNAG 6 cut(s) 366, 413, 456, 917, 1011, 1262
HpySE526I ACGT 1 cut(s) 1551
HspAI GCGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 1522
KspAI GTTAAC 1 cut(s) 825
Kzo9I GATC 6 cut(s) 39, 75, 873, 1258, 1402, 1522
LguI GCTCTTC 1 cut(s) 1022
LmnI GCTCC 2 cut(s) 206, 1118
Lsp1109I GCAGC 6 cut(s) 16, 60, 98, 324, 640, 1456
LweI GCATC 4 cut(s) 379, 519, 680, 953
MaeI CTAG 3 cut(s) 128, 960, 1046
MaeII ACGT 1 cut(s) 1551
MaeIII GTNAC 4 cut(s) 92, 175, 588, 597
MalI GATC 6 cut(s) 41, 77, 875, 1260, 1404, 1524
MboI GATC 6 cut(s) 39, 75, 873, 1258, 1402, 1522
MfeI CAATTG 2 cut(s) 572, 1398
MhlI GDGCHC 2 cut(s) 203, 1017
MluCI AATT 9 cut(s) 343, 430, 572, 950, 1183, 1210, 1371, 1398, 1555
MlyI GAGTC 1 cut(s) 461
MnlI CCTC 7 cut(s) 143, 214, 588, 591, 1092, 1343, 1376
MroXI GAANNNNTTC 2 cut(s) 837, 1178
MseI TTAA 3 cut(s) 351, 824, 1370
MslI CAYNNNNRTG 1 cut(s) 1485
MspA1I CMGCKG 1 cut(s) 326
MspR9I CCNGG 4 cut(s) 565, 1270, 1306, 1504
MunI CAATTG 2 cut(s) 572, 1398
MvaI CCWGG 4 cut(s) 565, 1270, 1306, 1504
MwoI GCNNNNNNNGC 2 cut(s) 30, 1373
NcoI CCATGG 1 cut(s) 889
NdeII GATC 6 cut(s) 39, 75, 873, 1258, 1402, 1522
NlaIV GGNNCC 4 cut(s) 234, 910, 1218, 1354
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 2 cut(s) 751, 1420
PaeI GCATGC 1 cut(s) 751
PaeR7I CTCGAG 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 1022
PdmI GAANNNNTTC 2 cut(s) 837, 1178
PfeI GAWTC 7 cut(s) 260, 292, 895, 1024, 1063, 1167, 1318
PflMI CCANNNNNTGG 1 cut(s) 1591
PkrI GCNGC 7 cut(s) 6, 50, 88, 339, 490, 655, 1471
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PpuMI RGGWCCY 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 1017
Psp5II RGGWCCY 1 cut(s) 396
Psp6I CCWGG 4 cut(s) 563, 1268, 1304, 1502
PspFI CCCAGC 2 cut(s) 322, 905
PspGI CCWGG 4 cut(s) 563, 1268, 1304, 1502
PspN4I GGNNCC 4 cut(s) 234, 910, 1218, 1354
PspPI GGNCC 5 cut(s) 233, 396, 909, 1216, 1542
PspPPI RGGWCCY 1 cut(s) 396
PstI CTGCAG 1 cut(s) 1474
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 2 cut(s) 501, 617
RsaNI GTAC 2 cut(s) 500, 616
RseI CAYNNNNRTG 1 cut(s) 1485
SacI GAGCTC 1 cut(s) 1017
SapI GCTCTTC 1 cut(s) 1022
SaqAI TTAA 3 cut(s) 351, 824, 1370
SatI GCNGC 7 cut(s) 5, 49, 87, 338, 489, 654, 1470
Sau3AI GATC 6 cut(s) 39, 75, 873, 1258, 1402, 1522
Sau96I GGNCC 5 cut(s) 233, 396, 909, 1216, 1542
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 4 cut(s) 565, 1270, 1306, 1504
SduI GDGCHC 2 cut(s) 203, 1017
SfaNI GCATC 4 cut(s) 379, 519, 680, 953
SfcI CTRYAG 1 cut(s) 1470
Sfr274I CTCGAG 1 cut(s) 43
SinI GGWCC 4 cut(s) 233, 396, 1216, 1542
SlaI CTCGAG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 1485
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SphI GCATGC 1 cut(s) 751
Sse9I AATT 9 cut(s) 343, 430, 572, 950, 1183, 1210, 1371, 1398, 1555
SsiI CCGC 1 cut(s) 488
SspI AATATT 2 cut(s) 545, 1450
SspMI CTAG 3 cut(s) 128, 960, 1046
SstI GAGCTC 1 cut(s) 1017
StyD4I CCNGG 4 cut(s) 563, 1268, 1304, 1502
StyI CCWWGG 3 cut(s) 236, 889, 1099
TaaI ACNGT 2 cut(s) 112, 518
TaiI ACGT 1 cut(s) 1554
TaqI TCGA 1 cut(s) 44
TasI AATT 9 cut(s) 343, 430, 572, 950, 1183, 1210, 1371, 1398, 1555
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 7 cut(s) 260, 292, 895, 1024, 1063, 1167, 1318
Tru1I TTAA 3 cut(s) 351, 824, 1370
Tru9I TTAA 3 cut(s) 351, 824, 1370
TscAI CASTG 4 cut(s) 172, 316, 521, 925
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 6 cut(s) 4, 48, 86, 337, 653, 1469
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 9 cut(s) 86, 148, 336, 386, 397, 488, 537, 555, 1262
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 4 cut(s) 172, 316, 521, 925
Van91I CCANNNNNTGG 1 cut(s) 1591
VpaK11BI GGWCC 4 cut(s) 233, 396, 1216, 1542
XapI RAATTY 3 cut(s) 343, 430, 1210
XceI RCATGY 2 cut(s) 751, 1420
XhoI CTCGAG 1 cut(s) 43
XmnI GAANNNNTTC 2 cut(s) 837, 1178
XspI CTAG 3 cut(s) 128, 960, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.