MD00G1171900.v1.1

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
39525304 .. 39530421
5118 bp
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UTR
Exon/CDS
Intron
MD00G1171900.v1.1.491

Sequence Viewer

Length: 1602 bp
ATGCAGCTTCACTTCTCTCCTAGTATGAGAAGCATAACGATCTCGAGCAGCAATGGGTTTATTGACTTGATGAAGATCAAAGTCGGAGCTCGCCACATCTCTTATCGAACGGTTTTCCACACCATTCTAATCCTCGCTTTCTTATTGCCTTTCGTCTTCATTCTCACTGCTGTTGTTACTCTTGAAGGTGTCAACAAGTGCTCCTCATTTGACTGTTTAGGTAGGCGCTTGGGACCAAGGCTTCTGGGTAGGGTTGATGATTCAGCGAGACTGGTTAGAGACTTTTACAAGGTTCTAAACCAAGTGAACACTGAAGAAATCCCGGCTGGTCTAAAGCTTCCAGATTCATTTAATCAACTTGTTTCCGAAATGAAGAACAACCAGTATGATGCAAGGACCTTTGCTTTCATGTTAAGAGCAATGATGGAGAATTTTGAAAAGGAAGTCAGAGAGTCTAAGTTTTCAGAGTTGATGAACAAACACTATGCGGCAAGTTCTGTACCCAAAAGCATTCACTGTCTGTCTCTGCGTTTGACTGATGAATATTCATCCAATGCTCATGCACGCAAACAATTGCCTCCTCCAGAATTACTGCCATTGCTCTCTGACAACTCCTATCACCACTTTGTTCTATCAACTGATAACATTCTGGCTGCTTCAGTTGTTGTTGCTTCTGCTGTCCAGTCATCTCTACAACCTGAAAAGATAGTCTTCCATGTCATTACCGACAAGAAAACCTACGCGGGTATGCACTCATGGTTTGCACTCAACCCTGTGTCCCCTGCTATTGTTGAAGTGAAAGGTGTGCACCAATTTGATTGGTTAACAAGAGAAAATGTGCCAGTCCTTGAAGCCGTAGAAAACCAATATGGAATCAGGAATTATTACCACGGGAATCATATTTCAGGGGCCAATCTTAGTGCTACAACTCCACGGACATTTGCATCAAAATTGCAGGCTAGAAGTCCAAAATACATATCCTTACTCAACCATCTCCGGATTTATATTCCTGAGCTATTTCCCAACCTTGATAAGGTGGTTTTCCTAGACGACGATGTTGTGATTCAACGAGATTTATCACCACTTTGGGGAATTGACCTTGGAGGAAAGGTCAACGGAGCTGTCGAAACTTGTAGAGGTGAAGATGAGTGGGTAATGTCCAAGCGATTCCGGAACTACTTCAATTTTTCCCATCCCCTCGTATCAAAGAATTTGGACCCTGAAGAATGTGCATGGGCTTATGGGATGAATATTTTTGATCTCAATGCCTGGAGAAAAACAAATATTAGAGAGACTTACCATTCCTGGGTGAAAGAGAATCTGAAGTCAAATCTGACAATATGGAAGCTTGGGACCCTACCACCCGCTTTAATTGCATTTAGAGGTCATGTTCACGCAATTGATCCAAAGTGGCACATGCTTGGGTTGGGTTATCAAAATAAGACCGATATTGAATCTGTGTCAAGGGCTGCAGTTATACACTATAATGGTCAGTCAAAACCATGGTTGCAGATTGGCTTTGAGCATCTTCGGCCATTTTGGACCAAGTATATCAACTACTCGAATGACTTTGTAAGGAACTGCCACATCTTGGAGTCATAG

Protein Analysis

534

Amino Acids

60.97

Weight (kDa)

8.88

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 173 - 505 4.6e-76 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1591
AccII CGCG 1 cut(s) 743
AccIII TCCGGA 2 cut(s) 996, 1170
AciI CCGC 3 cut(s) 488, 743, 1365
AclWI GGATC 1 cut(s) 1397
AcoI YGGCCR 1 cut(s) 1532
AcsI RAATTY 2 cut(s) 430, 1210
AcuI CTGAAG 4 cut(s) 333, 642, 1242, 1343
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 4 cut(s) 1033, 1088, 1306, 1591
AgsI TTSAA 7 cut(s) 185, 437, 794, 851, 1067, 1183, 1454
AjnI CCWGG 2 cut(s) 1268, 1304
AluBI AGCT 6 cut(s) 7, 89, 337, 1015, 1121, 1348
AluI AGCT 6 cut(s) 7, 89, 337, 1015, 1121, 1348
Alw21I GWGCWC 3 cut(s) 91, 203, 810
Alw26I GTCTC 4 cut(s) 262, 273, 528, 1286
Alw44I GTGCAC 1 cut(s) 806
AlwI GGATC 1 cut(s) 1397
Ama87I CYCGRG 1 cut(s) 43
Aor13HI TCCGGA 2 cut(s) 996, 1170
AoxI GGCC 2 cut(s) 909, 1532
ApaLI GTGCAC 1 cut(s) 806
ApeKI GCWGC 4 cut(s) 4, 48, 653, 1469
ApoI RAATTY 2 cut(s) 430, 1210
Asp700I GAANNNNTTC 1 cut(s) 1178
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 6 cut(s) 233, 396, 909, 1216, 1353, 1542
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 4 cut(s) 611, 1071, 1151, 1321
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 5 cut(s) 233, 396, 1216, 1353, 1542
BaeGI GKGCMC 1 cut(s) 810
BanII GRGCYC 1 cut(s) 91
BbsI GAAGAC 2 cut(s) 148, 703
Bbv12I GWGCWC 3 cut(s) 91, 203, 810
BbvI GCAGC 4 cut(s) 16, 60, 640, 1456
BccI CCATC 3 cut(s) 418, 999, 1200
BceAI ACGGC 1 cut(s) 839
BciT130I CCWGG 2 cut(s) 1270, 1306
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 4 cut(s) 262, 273, 528, 1286
BfaI CTAG 3 cut(s) 21, 960, 1046
BfmI CTRYAG 1 cut(s) 1470
BfoI RGCGCY 1 cut(s) 229
BisI GCNGC 5 cut(s) 5, 49, 489, 654, 1470
BlsI GCNGC 5 cut(s) 6, 50, 490, 655, 1471
Bme1390I CCNGG 3 cut(s) 323, 1270, 1306
Bme18I GGWCC 5 cut(s) 233, 396, 1216, 1353, 1542
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 6 cut(s) 233, 396, 909, 1216, 1353, 1542
BmiI GGNNCC 5 cut(s) 234, 910, 1218, 1354, 1355
BmrFI CCNGG 3 cut(s) 323, 1270, 1306
BmsI GCATC 3 cut(s) 379, 953, 1534
BpiI GAAGAC 2 cut(s) 148, 703
BpmI CTGGAG 2 cut(s) 567, 1291
Bpu10I CCTNAGC 1 cut(s) 1011
BpuMI CCSGG 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 6 cut(s) 236, 889, 932, 1099, 1305, 1502
BsaWI WCCGGW 2 cut(s) 996, 1170
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 1095, 1125
Bsc4I CCNNNNNNNGG 4 cut(s) 1033, 1088, 1306, 1591
Bse1I ACTGG 4 cut(s) 276, 382, 682, 842
Bse3DI GCAATG 3 cut(s) 58, 426, 596
Bse8I GATNNNNATC 1 cut(s) 74
BseAI TCCGGA 2 cut(s) 996, 1170
BseBI CCWGG 2 cut(s) 1270, 1306
BseDI CCNNGG 6 cut(s) 236, 889, 932, 1099, 1305, 1502
BseGI GGATG 3 cut(s) 548, 1192, 1251
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 4 cut(s) 1033, 1088, 1306, 1591
BseMI GCAATG 3 cut(s) 58, 426, 596
BseMII CTCAG 1 cut(s) 1002
BseNI ACTGG 4 cut(s) 276, 382, 682, 842
BseRI GAGGAG 2 cut(s) 193, 570
BseSI GKGCMC 1 cut(s) 810
BseXI GCAGC 4 cut(s) 16, 60, 640, 1456
Bsh1236I CGCG 1 cut(s) 743
BshFI GGCC 2 cut(s) 911, 1534
BsiHKAI GWGCWC 3 cut(s) 91, 203, 810
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 3 cut(s) 323, 997, 1171
BslFI GGGAC 3 cut(s) 246, 763, 1366
BslI CCNNNNNNNGG 4 cut(s) 1033, 1088, 1306, 1591
BsmAI GTCTC 4 cut(s) 262, 273, 528, 1286
BsmFI GGGAC 3 cut(s) 246, 763, 1366
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 2 cut(s) 911, 1534
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 3 cut(s) 91, 203, 810
Bsp13I TCCGGA 2 cut(s) 996, 1170
Bsp143I GATC 4 cut(s) 39, 75, 1258, 1402
Bsp19I CCATGG 1 cut(s) 1502
BspACI CCGC 3 cut(s) 488, 743, 1365
BspANI GGCC 2 cut(s) 911, 1534
BspCNI CTCAG 1 cut(s) 1003
BspEI TCCGGA 2 cut(s) 996, 1170
BspFNI CGCG 1 cut(s) 743
BspLI GGNNCC 5 cut(s) 234, 910, 1218, 1354, 1355
BspMAI CTGCAG 1 cut(s) 1474
BspPI GGATC 1 cut(s) 1397
BsrDI GCAATG 3 cut(s) 58, 426, 596
BsrI ACTGG 4 cut(s) 276, 382, 682, 842
BssECI CCNNGG 6 cut(s) 236, 889, 932, 1099, 1305, 1502
BssMI GATC 4 cut(s) 39, 75, 1258, 1402
BssT1I CCWWGG 3 cut(s) 236, 1099, 1502
Bst2UI CCWGG 2 cut(s) 1270, 1306
Bst4CI ACNGT 3 cut(s) 112, 215, 518
BstC8I GCNNGC 3 cut(s) 91, 565, 957
BstDEI CTNAG 3 cut(s) 456, 917, 1011
BstDSI CCRYGG 3 cut(s) 889, 932, 1502
BstENI CCTNNNNNAGG 1 cut(s) 1031
BstF5I GGATG 3 cut(s) 548, 1192, 1251
BstFNI CGCG 1 cut(s) 743
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 4 cut(s) 42, 78, 1261, 1405
BstMAI GTCTC 4 cut(s) 262, 273, 528, 1286
BstMBI GATC 4 cut(s) 39, 75, 1258, 1402
BstMWI GCNNNNNNNGC 2 cut(s) 1373, 1531
BstNI CCWGG 2 cut(s) 1270, 1306
BstNSI RCATGY 1 cut(s) 1420
BstSCI CCNGG 3 cut(s) 321, 1268, 1304
BstSFI CTRYAG 1 cut(s) 1470
BstSLI GKGCMC 1 cut(s) 810
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 4 cut(s) 16, 60, 640, 1456
BstV2I GAAGAC 2 cut(s) 148, 703
BsuRI GGCC 2 cut(s) 911, 1534
BtgI CCRYGG 3 cut(s) 889, 932, 1502
BtsCI GGATG 3 cut(s) 548, 1192, 1251
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 3 cut(s) 165, 309, 514
Cac8I GCNNGC 3 cut(s) 91, 565, 957
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 6 cut(s) 233, 396, 909, 1216, 1353, 1542
Csp6I GTAC 1 cut(s) 500
CviAII CATG 8 cut(s) 409, 560, 716, 756, 1233, 1388, 1417, 1503
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 3 cut(s) 456, 917, 1011
DpnI GATC 4 cut(s) 41, 77, 1260, 1404
DpnII GATC 4 cut(s) 39, 75, 1258, 1402
EaeI YGGCCR 1 cut(s) 1532
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 3 cut(s) 236, 1099, 1502
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 5 cut(s) 233, 396, 1216, 1353, 1542
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 4 cut(s) 333, 642, 1242, 1343
Eco88I CYCGRG 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 1031
EcoO109I RGGNCCY 2 cut(s) 396, 1353
EcoRII CCWGG 2 cut(s) 1268, 1304
EcoT14I CCWWGG 3 cut(s) 236, 1099, 1502
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 3 cut(s) 236, 1099, 1502
FaeI CATG 8 cut(s) 412, 563, 719, 759, 1236, 1391, 1420, 1506
FalI AAGNNNNNCTT 2 cut(s) 695, 727
FaqI GGGAC 3 cut(s) 246, 763, 1366
FatI CATG 8 cut(s) 408, 559, 715, 755, 1232, 1387, 1416, 1502
FauI CCCGC 2 cut(s) 736, 1372
Fnu4HI GCNGC 5 cut(s) 5, 49, 489, 654, 1470
FokI GGATG 3 cut(s) 535, 1179, 1258
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 5 cut(s) 5, 49, 489, 654, 1470
FspBI CTAG 3 cut(s) 21, 960, 1046
GlaI GCGC 1 cut(s) 227
GluI GCNGC 5 cut(s) 5, 49, 489, 654, 1470
GsuI CTGGAG 2 cut(s) 567, 1291
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 911, 1534
HapII CCGG 3 cut(s) 323, 997, 1171
HhaI GCGC 1 cut(s) 228
Hin1II CATG 8 cut(s) 412, 563, 719, 759, 1236, 1391, 1420, 1506
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 3 cut(s) 193, 825, 1114
HindII GTYRAC 3 cut(s) 193, 825, 1114
HindIII AAGCTT 2 cut(s) 335, 1346
HpaI GTTAAC 1 cut(s) 825
HpaII CCGG 3 cut(s) 323, 997, 1171
HphI GGTGA 4 cut(s) 611, 1071, 1151, 1321
Hpy166II GTNNAC 6 cut(s) 193, 307, 808, 825, 1114, 1393
Hpy188I TCNGA 7 cut(s) 86, 367, 449, 466, 607, 1323, 1335
Hpy188III TCNNGA 8 cut(s) 43, 182, 341, 584, 877, 997, 1010, 1171
Hpy8I GTNNAC 6 cut(s) 193, 307, 808, 825, 1114, 1393
Hpy99I CGWCG 1 cut(s) 1055
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 3 cut(s) 112, 215, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 1373, 1531
HpyF3I CTNAG 3 cut(s) 456, 917, 1011
Hsp92II CATG 8 cut(s) 412, 563, 719, 759, 1236, 1391, 1420, 1506
HspAI GCGC 1 cut(s) 226
KflI GGGWCCC 1 cut(s) 1353
Kpn2I TCCGGA 2 cut(s) 996, 1170
KspAI GTTAAC 1 cut(s) 825
Kzo9I GATC 4 cut(s) 39, 75, 1258, 1402
LmnI GCTCC 3 cut(s) 86, 206, 1118
Lsp1109I GCAGC 4 cut(s) 16, 60, 640, 1456
LweI GCATC 3 cut(s) 379, 953, 1534
MaeI CTAG 3 cut(s) 21, 960, 1046
MaeIII GTNAC 1 cut(s) 175
MalI GATC 4 cut(s) 41, 77, 1260, 1404
MboI GATC 4 cut(s) 39, 75, 1258, 1402
MboII GAAGA 8 cut(s) 85, 148, 326, 385, 703, 1154, 1235, 1520
MfeI CAATTG 2 cut(s) 572, 1398
MhlI GDGCHC 3 cut(s) 91, 203, 810
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 8 cut(s) 143, 214, 588, 591, 1097, 1130, 1208, 1376
MroI TCCGGA 2 cut(s) 996, 1170
MroXI GAANNNNTTC 1 cut(s) 1178
MseI TTAA 4 cut(s) 351, 413, 824, 1370
MslI CAYNNNNRTG 1 cut(s) 1485
MspI CCGG 3 cut(s) 323, 997, 1171
MspR9I CCNGG 3 cut(s) 323, 1270, 1306
MunI CAATTG 2 cut(s) 572, 1398
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 2 cut(s) 1270, 1306
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 2 cut(s) 1373, 1531
NciI CCSGG 1 cut(s) 323
NcoI CCATGG 1 cut(s) 1502
NdeII GATC 4 cut(s) 39, 75, 1258, 1402
NlaIII CATG 8 cut(s) 412, 563, 719, 759, 1236, 1391, 1420, 1506
NlaIV GGNNCC 5 cut(s) 234, 910, 1218, 1354, 1355
NspI RCATGY 1 cut(s) 1420
PaeR7I CTCGAG 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 1122
PctI GAATGC 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 1178
PfeI GAWTC 8 cut(s) 260, 344, 873, 895, 1063, 1167, 1318, 1454
PflMI CCANNNNNTGG 1 cut(s) 1591
PkrI GCNGC 5 cut(s) 6, 50, 490, 655, 1471
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PpuMI RGGWCCY 2 cut(s) 396, 1353
Psp124BI GAGCTC 1 cut(s) 91
Psp5II RGGWCCY 2 cut(s) 396, 1353
Psp6I CCWGG 2 cut(s) 1268, 1304
PspGI CCWGG 2 cut(s) 1268, 1304
PspN4I GGNNCC 5 cut(s) 234, 910, 1218, 1354, 1355
PspPI GGNCC 6 cut(s) 233, 396, 909, 1216, 1353, 1542
PspPPI RGGWCCY 2 cut(s) 396, 1353
PstI CTGCAG 1 cut(s) 1474
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
RseI CAYNNNNRTG 1 cut(s) 1485
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 4 cut(s) 351, 413, 824, 1370
SatI GCNGC 5 cut(s) 5, 49, 489, 654, 1470
Sau3AI GATC 4 cut(s) 39, 75, 1258, 1402
Sau96I GGNCC 6 cut(s) 233, 396, 909, 1216, 1353, 1542
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 3 cut(s) 323, 1270, 1306
SduI GDGCHC 3 cut(s) 91, 203, 810
SfaNI GCATC 3 cut(s) 379, 953, 1534
SfcI CTRYAG 1 cut(s) 1470
Sfr274I CTCGAG 1 cut(s) 43
SinI GGWCC 5 cut(s) 233, 396, 1216, 1353, 1542
SlaI CTCGAG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 1485
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SsiI CCGC 3 cut(s) 488, 743, 1365
SspI AATATT 3 cut(s) 545, 1252, 1285
SspMI CTAG 3 cut(s) 21, 960, 1046
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 3 cut(s) 321, 1268, 1304
StyI CCWWGG 3 cut(s) 236, 1099, 1502
TaaI ACNGT 3 cut(s) 112, 215, 518
TaqI TCGA 4 cut(s) 44, 106, 1125, 1562
TaqII GACCGA 1 cut(s) 1460
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 8 cut(s) 260, 344, 873, 895, 1063, 1167, 1318, 1454
Tru1I TTAA 4 cut(s) 351, 413, 824, 1370
Tru9I TTAA 4 cut(s) 351, 413, 824, 1370
TscAI CASTG 3 cut(s) 172, 316, 521
TseI GCWGC 4 cut(s) 4, 48, 653, 1469
TspDTI ATGAA 9 cut(s) 86, 148, 336, 386, 397, 488, 537, 555, 1262
TspGWI ACGGA 2 cut(s) 949, 1131
TspRI CASTG 3 cut(s) 172, 316, 521
Van91I CCANNNNNTGG 1 cut(s) 1591
VneI GTGCAC 1 cut(s) 806
VpaK11BI GGWCC 5 cut(s) 233, 396, 1216, 1353, 1542
XagI CCTNNNNNAGG 1 cut(s) 1031
XapI RAATTY 2 cut(s) 430, 1210
XceI RCATGY 1 cut(s) 1420
XhoI CTCGAG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 1178
XspI CTAG 3 cut(s) 21, 960, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.