Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007713

Physical Location & Seq

Genomic Coordinates Reverse (-)

3994132 .. 3996808

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g05600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGCAGCTTCACTTCTCGCCTAGTATGAGAAGCATAACGATCTCGAGCAGCAATGGGTTTATTGACTTGATGAAGATCAAGGTCGGAGCTCGCCACATCTCTTATCGAACGGTTTTCCACACCATTCTAATCCTCGCTTTCTTATTGCCTTTCGTCTTCATTCTCACTGCTGTTGTTACTCTTGAAGGTGTCAACAAGTGCTCCTCATTTGACTGTTTAGGTAGGCGCTTGGGACCAAGGCTTCTGGGTAGGGTTGATGATTCAGCGAGACTGGTTAGAGACTTTTACAAGGTTCTAAACCAAGTGAACACTGAAGAAATCCCGGCTGGTCTAAAGCTTCCAGATTCATTTAATCAACTTGTTTCCGAAATGAAGAACAACCAGTATGATGCAAGGACCTTTGCTTTCATGTTAAGAGCAATGATGGAGAATTTTGAAAAGGAAGTCAGAGAGTCTAAGTTTTCAGAGTTGATGAACAAACACTATGCAGCAAGTTCTGTACCCAAAAGTATTCACTGTCTGTCTCTGCGTTTGACTGATGAATATTCATCCAATGCTCATGCACGCAAACAATTGCCTCCTCCAGAATTACTGCCATTGCTCTCTGACAACTCCTATCACCACTTTATTCTATCAACTGATAACATTCTGGCTGCTTCAGTTGTTGTTGCTTCTGCTGTCCAGTCATCTCTACAACCTGAAAAGATAGTCTTCCATGTCATTACTGACAAGAAAACCTACGCGGGTATGCACTCATGGTTTGCACTCAACCCTGTGTCCCCTGCTATTGTTGAAGTGAAAGGTGTGCACCAATTTGATTGGTTAACAAGAGAAAATGTTCCAGTCCTTGAAGCCGTAGAAAACCAATATGGAATCAGGAATTATTACCACGGGAATCATATTTCAGGGGCCAATCTTAGTGCTACAACTCCACGGACATTTGCATCAAAATTGCAGGCTAGAAGTCCAAAATACATATCCTTACTCAACCATCTCCGGATTTATATTCCTGAGCTATTTCCCAACCTTGATAAGGTGGTTTTCCTAGATGATGATGTTGTGATTCAACGAGATTTATCACCACTTTGGGAAATTGACCTTGGAGGAAAGGTCAACGGAGCTGTTGAAACTTGTAGAGGTGAAGATGAGTGGGTGATGTCCAAGCGATTCCGGAACTACTTCAATTTTTCCCATCCCCTCGTATCAAAGAATTTGGACCCTGAAGAATGTGCATGGGCTTATGGGATGAATATTGTTCGATCTCAATGCCTGGAGAAAAACAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

430

Amino Acids

48.83

Weight (kDa)

8.39

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01040 AT3G01040 AT3G01040 AT5G15470
fragaria_vesca	FvH4_6g47380 FvH4_6g47380 FvH4_6g47380 FvH4_6g47380
malus_domestica	MD00G1171900.v1.1 MD09G1061900.v1.1
prunus_persica	Prupe.3G258200_v2.0.a1
pyrus_communis	pycom111g05220 pycom17g05600
rosa_chinensis	RchiOBHm_Chr2g0166431
rosa_laevigata	RLG00000021618
rosa_multiflora	Rmu_sc0003016.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084910
rosa_rugosa	Rorug02G0522800 Rorug02G0522900 Rorug02G0523000
rosa_samantha	Rh2BG601100 Rh2CG571700 Rh2DG611300
rosa_wichuraiana	Rw2G049080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	743
AccIII	TCCGGA	2 cut(s)	996, 1170
AciI	CCGC	1 cut(s)	743
AcsI	RAATTY	2 cut(s)	430, 1210
AcuI	CTGAAG	3 cut(s)	333, 642, 1242
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	1 cut(s)	1033
AgsI	TTSAA	7 cut(s)	185, 437, 794, 851, 1067, 1127, 1183
AjnI	CCWGG	1 cut(s)	1269
AjuI	GAANNNNNNNTTGG	2 cut(s)	1083, 1115
AluBI	AGCT	5 cut(s)	7, 89, 337, 1015, 1121
AluI	AGCT	5 cut(s)	7, 89, 337, 1015, 1121
Alw21I	GWGCWC	3 cut(s)	91, 203, 810
Alw26I	GTCTC	3 cut(s)	262, 273, 528
Alw44I	GTGCAC	1 cut(s)	806
Ama87I	CYCGRG	1 cut(s)	43
Aor13HI	TCCGGA	2 cut(s)	996, 1170
AoxI	GGCC	1 cut(s)	909
ApaLI	GTGCAC	1 cut(s)	806
ApeKI	GCWGC	4 cut(s)	4, 48, 488, 653
ApoI	RAATTY	2 cut(s)	430, 1210
Asp700I	GAANNNNTTC	2 cut(s)	837, 1178
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	4 cut(s)	233, 396, 909, 1216
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	611, 1071, 1151, 1165
AvaI	CYCGRG	1 cut(s)	43
AvaII	GGWCC	3 cut(s)	233, 396, 1216
BaeGI	GKGCMC	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	91
BbsI	GAAGAC	2 cut(s)	148, 703
Bbv12I	GWGCWC	3 cut(s)	91, 203, 810
BbvI	GCAGC	4 cut(s)	16, 60, 500, 640
BccI	CCATC	3 cut(s)	418, 999, 1200
BceAI	ACGGC	1 cut(s)	839
BcgI	CGANNNNNNTGC	2 cut(s)	1248, 1282
BciT130I	CCWGG	1 cut(s)	1271
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	262, 273, 528
BfaI	CTAG	3 cut(s)	21, 960, 1046
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	4 cut(s)	5, 49, 489, 654
BlsI	GCNGC	4 cut(s)	6, 50, 490, 655
Bme1390I	CCNGG	2 cut(s)	323, 1271
Bme18I	GGWCC	3 cut(s)	233, 396, 1216
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	4 cut(s)	233, 396, 909, 1216
BmiI	GGNNCC	3 cut(s)	234, 910, 1218
BmrFI	CCNGG	2 cut(s)	323, 1271
BmsI	GCATC	2 cut(s)	379, 953
BpiI	GAAGAC	2 cut(s)	148, 703
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	1011
BpuMI	CCSGG	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	4 cut(s)	236, 889, 932, 1099
BsaWI	WCCGGW	2 cut(s)	996, 1170
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 1095, 1125
Bsc4I	CCNNNNNNNGG	1 cut(s)	1033
Bse1I	ACTGG	4 cut(s)	276, 382, 682, 842
Bse3DI	GCAATG	3 cut(s)	58, 426, 596
Bse8I	GATNNNNATC	1 cut(s)	74
BseAI	TCCGGA	2 cut(s)	996, 1170
BseBI	CCWGG	1 cut(s)	1271
BseDI	CCNNGG	4 cut(s)	236, 889, 932, 1099
BseGI	GGATG	3 cut(s)	548, 1192, 1251
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	1033
BseMI	GCAATG	3 cut(s)	58, 426, 596
BseMII	CTCAG	1 cut(s)	1002
BseNI	ACTGG	4 cut(s)	276, 382, 682, 842
BseRI	GAGGAG	2 cut(s)	193, 570
BseSI	GKGCMC	1 cut(s)	810
BseXI	GCAGC	4 cut(s)	16, 60, 500, 640
Bsh1236I	CGCG	1 cut(s)	743
BshFI	GGCC	1 cut(s)	911
BsiHKAI	GWGCWC	3 cut(s)	91, 203, 810
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	3 cut(s)	323, 997, 1171
BslFI	GGGAC	2 cut(s)	246, 763
BslI	CCNNNNNNNGG	1 cut(s)	1033
BsmAI	GTCTC	3 cut(s)	262, 273, 528
BsmFI	GGGAC	2 cut(s)	246, 763
BsnI	GGCC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	3 cut(s)	91, 203, 810
Bsp13I	TCCGGA	2 cut(s)	996, 1170
Bsp143I	GATC	3 cut(s)	39, 75, 1259
BspACI	CCGC	1 cut(s)	743
BspANI	GGCC	1 cut(s)	911
BspCNI	CTCAG	1 cut(s)	1003
BspEI	TCCGGA	2 cut(s)	996, 1170
BspFNI	CGCG	1 cut(s)	743
BspLI	GGNNCC	3 cut(s)	234, 910, 1218
BsrDI	GCAATG	3 cut(s)	58, 426, 596
BsrI	ACTGG	4 cut(s)	276, 382, 682, 842
BssECI	CCNNGG	4 cut(s)	236, 889, 932, 1099
BssMI	GATC	3 cut(s)	39, 75, 1259
BssT1I	CCWWGG	2 cut(s)	236, 1099
Bst2UI	CCWGG	1 cut(s)	1271
Bst4CI	ACNGT	3 cut(s)	112, 215, 518
BstC8I	GCNNGC	3 cut(s)	91, 565, 957
BstDEI	CTNAG	3 cut(s)	456, 917, 1011
BstDSI	CCRYGG	2 cut(s)	889, 932
BstENI	CCTNNNNNAGG	1 cut(s)	1031
BstF5I	GGATG	3 cut(s)	548, 1192, 1251
BstFNI	CGCG	1 cut(s)	743
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	3 cut(s)	42, 78, 1262
BstMAI	GTCTC	3 cut(s)	262, 273, 528
BstMBI	GATC	3 cut(s)	39, 75, 1259
BstNI	CCWGG	1 cut(s)	1271
BstSCI	CCNGG	2 cut(s)	321, 1269
BstSLI	GKGCMC	1 cut(s)	810
BstUI	CGCG	1 cut(s)	743
BstV1I	GCAGC	4 cut(s)	16, 60, 500, 640
BstV2I	GAAGAC	2 cut(s)	148, 703
BsuRI	GGCC	1 cut(s)	911
BtgI	CCRYGG	2 cut(s)	889, 932
BtsCI	GGATG	3 cut(s)	548, 1192, 1251
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	165, 309, 514
Cac8I	GCNNGC	3 cut(s)	91, 565, 957
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	4 cut(s)	233, 396, 909, 1216
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	5 cut(s)	409, 560, 716, 756, 1233
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	3 cut(s)	456, 917, 1011
DpnI	GATC	3 cut(s)	41, 77, 1261
DpnII	GATC	3 cut(s)	39, 75, 1259
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	236, 1099
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	3 cut(s)	233, 396, 1216
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	3 cut(s)	333, 642, 1242
Eco88I	CYCGRG	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	1031
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	1269
EcoT14I	CCWWGG	2 cut(s)	236, 1099
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	236, 1099
FaeI	CATG	5 cut(s)	412, 563, 719, 759, 1236
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FaqI	GGGAC	2 cut(s)	246, 763
FatI	CATG	5 cut(s)	408, 559, 715, 755, 1232
FauI	CCCGC	1 cut(s)	736
Fnu4HI	GCNGC	4 cut(s)	5, 49, 489, 654
FokI	GGATG	3 cut(s)	535, 1179, 1258
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	4 cut(s)	5, 49, 489, 654
FspBI	CTAG	3 cut(s)	21, 960, 1046
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	4 cut(s)	5, 49, 489, 654
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	911
HapII	CCGG	3 cut(s)	323, 997, 1171
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	412, 563, 719, 759, 1236
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	3 cut(s)	193, 825, 1114
HindII	GTYRAC	3 cut(s)	193, 825, 1114
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	7 cut(s)	260, 344, 452, 873, 895, 1063, 1167
HpaI	GTTAAC	1 cut(s)	825
HpaII	CCGG	3 cut(s)	323, 997, 1171
HphI	GGTGA	4 cut(s)	611, 1071, 1151, 1165
Hpy166II	GTNNAC	5 cut(s)	193, 307, 808, 825, 1114
Hpy188I	TCNGA	5 cut(s)	86, 367, 449, 466, 607
Hpy188III	TCNNGA	8 cut(s)	43, 182, 341, 584, 877, 997, 1010, 1171
Hpy8I	GTNNAC	5 cut(s)	193, 307, 808, 825, 1114
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	3 cut(s)	112, 215, 518
HpyF3I	CTNAG	3 cut(s)	456, 917, 1011
Hsp92II	CATG	5 cut(s)	412, 563, 719, 759, 1236
HspAI	GCGC	1 cut(s)	226
Kpn2I	TCCGGA	2 cut(s)	996, 1170
KspAI	GTTAAC	1 cut(s)	825
Kzo9I	GATC	3 cut(s)	39, 75, 1259
LmnI	GCTCC	3 cut(s)	86, 206, 1118
Lsp1109I	GCAGC	4 cut(s)	16, 60, 500, 640
LweI	GCATC	2 cut(s)	379, 953
MaeI	CTAG	3 cut(s)	21, 960, 1046
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	3 cut(s)	41, 77, 1261
MboI	GATC	3 cut(s)	39, 75, 1259
MboII	GAAGA	7 cut(s)	85, 148, 326, 385, 703, 1154, 1235
MfeI	CAATTG	1 cut(s)	572
MhlI	GDGCHC	3 cut(s)	91, 203, 810
MluCI	AATT	9 cut(s)	430, 572, 587, 812, 880, 950, 1092, 1183, 1210
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	7 cut(s)	143, 214, 588, 591, 1097, 1130, 1208
MroI	TCCGGA	2 cut(s)	996, 1170
MroXI	GAANNNNTTC	2 cut(s)	837, 1178
MseI	TTAA	3 cut(s)	351, 413, 824
MspI	CCGG	3 cut(s)	323, 997, 1171
MspR9I	CCNGG	2 cut(s)	323, 1271
MunI	CAATTG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	1271
MvnI	CGCG	1 cut(s)	743
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	3 cut(s)	39, 75, 1259
NlaIII	CATG	5 cut(s)	412, 563, 719, 759, 1236
NlaIV	GGNNCC	3 cut(s)	234, 910, 1218
PaeR7I	CTCGAG	1 cut(s)	43
PdmI	GAANNNNTTC	2 cut(s)	837, 1178
PfeI	GAWTC	6 cut(s)	260, 344, 873, 895, 1063, 1167
PkrI	GCNGC	4 cut(s)	6, 50, 490, 655
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	1269
PspGI	CCWGG	1 cut(s)	1269
PspN4I	GGNNCC	3 cut(s)	234, 910, 1218
PspPI	GGNCC	4 cut(s)	233, 396, 909, 1216
PspPPI	RGGWCCY	1 cut(s)	396
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	351, 413, 824
SatI	GCNGC	4 cut(s)	5, 49, 489, 654
Sau3AI	GATC	3 cut(s)	39, 75, 1259
Sau96I	GGNCC	4 cut(s)	233, 396, 909, 1216
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	323, 1271
SduI	GDGCHC	3 cut(s)	91, 203, 810
SfaNI	GCATC	2 cut(s)	379, 953
Sfr274I	CTCGAG	1 cut(s)	43
SinI	GGWCC	3 cut(s)	233, 396, 1216
SlaI	CTCGAG	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	9 cut(s)	430, 572, 587, 812, 880, 950, 1092, 1183, 1210
SsiI	CCGC	1 cut(s)	743
SspI	AATATT	3 cut(s)	545, 1252, 1286
SspMI	CTAG	3 cut(s)	21, 960, 1046
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	321, 1269
StyI	CCWWGG	2 cut(s)	236, 1099
TaaI	ACNGT	3 cut(s)	112, 215, 518
TaqI	TCGA	3 cut(s)	44, 106, 1258
TasI	AATT	9 cut(s)	430, 572, 587, 812, 880, 950, 1092, 1183, 1210
TfiI	GAWTC	6 cut(s)	260, 344, 873, 895, 1063, 1167
Tru1I	TTAA	3 cut(s)	351, 413, 824
Tru9I	TTAA	3 cut(s)	351, 413, 824
TscAI	CASTG	3 cut(s)	172, 316, 521
TseI	GCWGC	4 cut(s)	4, 48, 488, 653
TspDTI	ATGAA	9 cut(s)	86, 148, 336, 386, 397, 488, 537, 555, 1262
TspGWI	ACGGA	2 cut(s)	949, 1131
TspRI	CASTG	3 cut(s)	172, 316, 521
VneI	GTGCAC	1 cut(s)	806
VpaK11BI	GGWCC	3 cut(s)	233, 396, 1216
XagI	CCTNNNNNAGG	1 cut(s)	1031
XapI	RAATTY	2 cut(s)	430, 1210
XhoI	CTCGAG	1 cut(s)	43
XmnI	GAANNNNTTC	2 cut(s)	837, 1178
XspI	CTAG	3 cut(s)	21, 960, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.