Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007713

Physical Location & Seq

Genomic Coordinates Forward (+)

65408492 .. 65411565

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0522900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGAACAGCGATATCGGCGTCTTTGAGCAGCCAAATTTCGATGGCAAGGCTGATTATCTTCTCGAACTTTTGTTAATAACCTTCTGTTCCGCCAACTCTGGGTGCTGCTGGAGAACCAACAGGCATTACTGTGGACTTATCAGGGCATTTTCATATGGAGAACTTTTCAGGGCTACAGATAACTTCAATCTGACTAATAAGAATGGAGAAGGTGGTTGCGGGGATGTTTACTATGCTGAGCTACGAGGCCAGGGAGGGACCCAATTCCATGGTCTAATAGAATGCACATTGCCCTGGATTCAGCGAGAGGTTGCCGATTTTGGATTAAGTAAACTTACTGAAGTCAGAAAATACAATAAATCCAACACATCTTGCAGGGACATTTGGATACATGCCACCAGAGTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

137

Amino Acids

15.59

Weight (kDa)

6.28

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01040 AT3G01040 AT3G01040 AT5G15470
fragaria_vesca	FvH4_6g47380 FvH4_6g47380 FvH4_6g47380 FvH4_6g47380
malus_domestica	MD00G1171900.v1.1 MD09G1061900.v1.1
prunus_persica	Prupe.3G258200_v2.0.a1
pyrus_communis	pycom111g05220 pycom17g05600
rosa_chinensis	RchiOBHm_Chr2g0166431
rosa_laevigata	RLG00000021618
rosa_multiflora	Rmu_sc0003016.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084910
rosa_rugosa	Rorug02G0522800 Rorug02G0522900 Rorug02G0523000
rosa_samantha	Rh2BG601100 Rh2CG571700 Rh2DG611300
rosa_wichuraiana	Rw2G049080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 222
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	252, 296
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	31, 108
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	43, 95
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	254, 298
BciVI	GTATCC	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	384
BisI	GCNGC	2 cut(s)	32, 109
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	2 cut(s)	33, 110
Bme1390I	CCNGG	2 cut(s)	254, 298
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	262, 263
BmrFI	CCNGG	2 cut(s)	254, 298
BpmI	CTGGAG	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	253, 271, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	254, 298
BseDI	CCNNGG	3 cut(s)	253, 271, 296
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	43, 95
BshFI	GGCC	1 cut(s)	252
BslFI	GGGAC	2 cut(s)	274, 395
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	274, 395
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	252
Bsp1720I	GCTNAGC	1 cut(s)	240
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	2 cut(s)	93, 222
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	262, 263
BsrDI	GCAATG	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	253, 271, 296
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	2 cut(s)	254, 298
Bst4CI	ACNGT	1 cut(s)	134
BstACI	GRCGYC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	2 cut(s)	254, 298
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	252, 296
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	43, 95
BstXI	CCANNNNNNTGG	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	1 cut(s)	10
CviAII	CATG	2 cut(s)	272, 395
CviJI	RGCY	5 cut(s)	34, 53, 176, 244, 252
CviKI_1	RGCY	5 cut(s)	34, 53, 176, 244, 252
DdeI	CTNAG	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	252, 296
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	275, 398
FaiI	YATR	5 cut(s)	157, 159, 237, 273, 396
FaqI	GGGAC	2 cut(s)	274, 395
FatI	CATG	2 cut(s)	271, 394
FauI	CCCGC	1 cut(s)	215
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	32, 109
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	32, 109
GluI	GCNGC	2 cut(s)	32, 109
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	252
HgaI	GACGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	275, 398
HinfI	GANTC	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	137, 232, 335
Hpy188I	TCNGA	2 cut(s)	195, 350
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	3 cut(s)	137, 232, 335
HpyAV	CCTTC	2 cut(s)	94, 206
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	2 cut(s)	288, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	275, 398
KflI	GGGWCCC	1 cut(s)	261
Lsp1109I	GCAGC	2 cut(s)	43, 95
MboII	GAAGA	1 cut(s)	53
MluCI	AATT	2 cut(s)	37, 266
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	3 cut(s)	242, 251, 304
MseI	TTAA	2 cut(s)	77, 329
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	254, 298
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	2 cut(s)	254, 298
MwoI	GCNNNNNNNGC	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	271
NdeI	CATATG	1 cut(s)	157
NlaIII	CATG	2 cut(s)	275, 398
NlaIV	GGNNCC	2 cut(s)	262, 263
NspI	RCATGY	1 cut(s)	398
PctI	GAATGC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	33, 110
PpuMI	RGGWCCY	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	252, 296
PspGI	CCWGG	2 cut(s)	252, 296
PspN4I	GGNNCC	2 cut(s)	262, 263
PspPI	GGNCC	1 cut(s)	261
PspPPI	RGGWCCY	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	77, 329
SatI	GCNGC	2 cut(s)	32, 109
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	254, 298
SetI	ASST	4 cut(s)	86, 217, 246, 315
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	2 cut(s)	37, 266
SsiI	CCGC	2 cut(s)	93, 222
StyD4I	CCNGG	2 cut(s)	252, 296
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	42, 66
TasI	AATT	2 cut(s)	37, 266
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	2 cut(s)	77, 329
Tru9I	TTAA	2 cut(s)	77, 329
TseI	GCWGC	2 cut(s)	31, 108
TspDTI	ATGAA	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.