Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007713

Physical Location & Seq

Genomic Coordinates Forward (+)

82152722 .. 82157776

Gene Structure 5055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG601100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGCAGCTTCACTTCTCGCCGAGCATGAGAAGCATAACGATCTCGAGCAGCAATGGGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTATAGAACAGTCTTCCACACCATTCTAGTCCTCGCTTTCTTGTTGCCCTTTGTCTTCATTCTCACTGCTGTTGTTACTCTTGAAGGTGTCAACAAGTGCTCCTCATTTGATTGTTTAGGTAGGCGCTTGGGACCAAGGCTTCTTGGTAGGGTTGATGATTCAGGGAGACTGGTTAGAGACTTTTACAAGATTCTCAACCAAGTGAACACTGAAGAAATCCCAGCTGGTCTAAAGCTGCCAAATTCATTTAATAAACTTGTTTCTGAGATGAAGAACAACCAGTATGATGCAAGGACCTTTGCTTTCATGCTAAGAGCCATGATGGAGAATTTTGAAAAGGAAATCAGAGAGTCTAAGTTTTCAGAGCTGATGAACAAACACTTTGCGGCAAGTTCTGTACCCAAAGGCATCCACTGTCTGTCTTTGCGTTTGACTGATGAATATTCATCCAATGCTCATGCCAGGAAGCAATTGCCTCCTCCAGAGTTACTTCCATTACTCTCTGACAACTCTTACCACCACTTTATCCTATCAACTGATAACATCTTGGCTGCTTCAGTTGTTGTTGCATCTGCTGTCCAGACATCTCTCAAACCTGAAAAGATAGTCTTCCATGTCATTACTGACAAGAAAACTTACGCTGGCATGCACTCATGGTTTGCACTAAACCCTGTCTCCCCTGCTATTGTTGAAGTGAAAGGTGTCCACCAGTTTGATTGGTTAACAAGAGAAAATGTTCCAGTCCTTGAAGCTGTTGAAAATCAAAATGGGATCAGGGATTATTACCATGGGAATCATCTTGCTGGGGCCAATCTCAGTGCTACAACTCCACGAACTTTCGCATCAAAATTGCAGGCTAGAAGTCCCAAATACATATCCTTACTCAACCATCTTCGCATATATTTACCTGAGCTCTTCCCGAATCTTGACAAGGTGGTTTTCCTAGATGATGATGTTGTGATTCAGCGAGATTTATCGCCACTTTGGGACATTGACCTTGGGGGAAAGGTCAATGGAGCTGTTGAAACTTGTAAAGGTGAAGATGAGTGGGTAATGTCCAAGCGATTCAGGAACTACTTCAATTTTTCCCATCCCCTCGTAGCAAAGAATTTGGACCCTGAAGAATGTGCATGGGCTTATGGGATGAATATCTTTGATCTTAGTGCCTGGAGAAAGACAAATATAAGAGAGACTTATCATTCCTGGCTGAAAGAGGTAAAATTGAAGTATTCAAGCTTCTCCCACACATTTTGTGTTTTTGTTCATCTCGTTCCTGAGGTCATGCTCAATTGCAAGTTTCCACTTGCGCAAATCAATATTTGGCGCATTAAGTATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010383 GO:0010393 GO:0012505 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

480

Amino Acids

54.9

Weight (kDa)

8.95

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	173 - 442	3e-53	Glycosyl transferase family 8
Glyco_transf_24	PF18404	333 - 386	5.3e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01040 AT3G01040 AT3G01040 AT5G15470
fragaria_vesca	FvH4_6g47380 FvH4_6g47380 FvH4_6g47380 FvH4_6g47380
malus_domestica	MD00G1171900.v1.1 MD09G1061900.v1.1
prunus_persica	Prupe.3G258200_v2.0.a1
pyrus_communis	pycom111g05220 pycom17g05600
rosa_chinensis	RchiOBHm_Chr2g0166431
rosa_laevigata	RLG00000021618
rosa_multiflora	Rmu_sc0003016.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084910
rosa_rugosa	Rorug02G0522800 Rorug02G0522900 Rorug02G0523000
rosa_samantha	Rh2BG601100 Rh2CG571700 Rh2DG611300
rosa_wichuraiana	Rw2G049080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1410
AciI	CCGC	1 cut(s)	488
AclWI	GGATC	1 cut(s)	881
AcsI	RAATTY	3 cut(s)	343, 430, 1210
AcuI	CTGAAG	3 cut(s)	333, 642, 1242
AfaI	GTAC	1 cut(s)	501
AgsI	TTSAA	9 cut(s)	185, 437, 794, 851, 860, 1127, 1183, 1327, 1335
AjnI	CCWGG	3 cut(s)	563, 1268, 1304
AluBI	AGCT	9 cut(s)	7, 89, 326, 337, 469, 854, 1015, 1121, 1338
AluI	AGCT	9 cut(s)	7, 89, 326, 337, 469, 854, 1015, 1121, 1338
Alw21I	GWGCWC	2 cut(s)	203, 1017
Alw26I	GTCTC	4 cut(s)	262, 273, 781, 1286
AlwI	GGATC	1 cut(s)	881
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	1 cut(s)	909
ApeKI	GCWGC	5 cut(s)	4, 48, 86, 337, 653
ApoI	RAATTY	3 cut(s)	343, 430, 1210
Asp700I	GAANNNNTTC	2 cut(s)	837, 1178
AspLEI	GCGC	3 cut(s)	228, 1411, 1428
AspS9I	GGNCC	4 cut(s)	233, 396, 909, 1216
AsuHPI	GGTGA	1 cut(s)	1151
AvaI	CYCGRG	1 cut(s)	43
AvaII	GGWCC	3 cut(s)	233, 396, 1216
AxyI	CCTNAGG	1 cut(s)	1377
BanII	GRGCYC	1 cut(s)	1017
BarI	GAAGNNNNNNTAC	2 cut(s)	1322, 1354
BbsI	GAAGAC	3 cut(s)	106, 148, 703
Bbv12I	GWGCWC	2 cut(s)	203, 1017
BbvI	GCAGC	5 cut(s)	16, 60, 98, 324, 640
BccI	CCATC	3 cut(s)	418, 999, 1200
BciT130I	CCWGG	3 cut(s)	565, 1270, 1306
BcoDI	GTCTC	4 cut(s)	262, 273, 781, 1286
BfaI	CTAG	3 cut(s)	128, 960, 1046
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	6 cut(s)	5, 49, 87, 338, 489, 654
BlsI	GCNGC	6 cut(s)	6, 50, 88, 339, 490, 655
Bme1390I	CCNGG	3 cut(s)	565, 1270, 1306
Bme18I	GGWCC	3 cut(s)	233, 396, 1216
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	4 cut(s)	233, 396, 909, 1216
BmiI	GGNNCC	3 cut(s)	234, 910, 1218
BmrFI	CCNGG	3 cut(s)	565, 1270, 1306
BmsI	GCATC	4 cut(s)	379, 519, 680, 953
BpiI	GAAGAC	3 cut(s)	106, 148, 703
BpmI	CTGGAG	2 cut(s)	567, 1291
Bpu10I	CCTNAGC	1 cut(s)	1011
BsaBI	GATNNNNATC	2 cut(s)	74, 1250
BsaJI	CCNNGG	3 cut(s)	236, 889, 1099
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 761, 791
Bse1I	ACTGG	4 cut(s)	276, 382, 811, 842
Bse21I	CCTNAGG	1 cut(s)	1377
Bse3DI	GCAATG	1 cut(s)	58
Bse8I	GATNNNNATC	2 cut(s)	74, 1250
BseBI	CCWGG	3 cut(s)	565, 1270, 1306
BseDI	CCNNGG	3 cut(s)	236, 889, 1099
BseGI	GGATG	4 cut(s)	510, 548, 1192, 1251
BseJI	GATNNNNATC	2 cut(s)	74, 1250
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	4 cut(s)	357, 931, 1002, 1368
BseNI	ACTGG	4 cut(s)	276, 382, 811, 842
BseRI	GAGGAG	2 cut(s)	193, 570
BseXI	GCAGC	5 cut(s)	16, 60, 98, 324, 640
BseYI	CCCAGC	2 cut(s)	322, 905
BshFI	GGCC	1 cut(s)	911
BsiHKAI	GWGCWC	2 cut(s)	203, 1017
BsiHKCI	CYCGRG	1 cut(s)	43
BslFI	GGGAC	3 cut(s)	246, 951, 1103
BsmAI	GTCTC	4 cut(s)	262, 273, 781, 1286
BsmFI	GGGAC	3 cut(s)	246, 951, 1103
BsnI	GGCC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	203, 1017
Bsp143I	GATC	4 cut(s)	39, 75, 873, 1258
Bsp19I	CCATGG	1 cut(s)	889
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	1 cut(s)	911
BspCNI	CTCAG	4 cut(s)	358, 930, 1003, 1369
BspLI	GGNNCC	3 cut(s)	234, 910, 1218
BspPI	GGATC	1 cut(s)	881
BspQI	GCTCTTC	1 cut(s)	1022
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	4 cut(s)	276, 382, 811, 842
BssECI	CCNNGG	3 cut(s)	236, 889, 1099
BssMI	GATC	4 cut(s)	39, 75, 873, 1258
BssT1I	CCWWGG	3 cut(s)	236, 889, 1099
Bst2UI	CCWGG	3 cut(s)	565, 1270, 1306
Bst4CI	ACNGT	2 cut(s)	112, 518
Bst6I	CTCTTC	1 cut(s)	1022
BstC8I	GCNNGC	3 cut(s)	745, 749, 957
BstDEI	CTNAG	7 cut(s)	366, 413, 456, 917, 1011, 1262, 1377
BstDSI	CCRYGG	1 cut(s)	889
BstF5I	GGATG	4 cut(s)	510, 548, 1192, 1251
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	3 cut(s)	228, 1411, 1428
BstKTI	GATC	4 cut(s)	42, 78, 876, 1261
BstMAI	GTCTC	4 cut(s)	262, 273, 781, 1286
BstMBI	GATC	4 cut(s)	39, 75, 873, 1258
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	3 cut(s)	565, 1270, 1306
BstNSI	RCATGY	1 cut(s)	751
BstSCI	CCNGG	3 cut(s)	563, 1268, 1304
BstV1I	GCAGC	5 cut(s)	16, 60, 98, 324, 640
BstV2I	GAAGAC	3 cut(s)	106, 148, 703
Bsu36I	CCTNAGG	1 cut(s)	1377
BsuRI	GGCC	1 cut(s)	911
BtgI	CCRYGG	1 cut(s)	889
BtsCI	GGATG	4 cut(s)	510, 548, 1192, 1251
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	4 cut(s)	165, 309, 514, 925
Cac8I	GCNNGC	3 cut(s)	745, 749, 957
CfoI	GCGC	3 cut(s)	228, 1411, 1428
Cfr13I	GGNCC	4 cut(s)	233, 396, 909, 1216
Csp6I	GTAC	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	1334, 1369
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	7 cut(s)	366, 413, 456, 917, 1011, 1262, 1377
DpnI	GATC	4 cut(s)	41, 77, 875, 1260
DpnII	GATC	4 cut(s)	39, 75, 873, 1258
Eam1104I	CTCTTC	1 cut(s)	1022
EarI	CTCTTC	1 cut(s)	1022
Ecl136II	GAGCTC	1 cut(s)	1015
Eco130I	CCWWGG	3 cut(s)	236, 889, 1099
Eco24I	GRGCYC	1 cut(s)	1017
Eco47I	GGWCC	3 cut(s)	233, 396, 1216
Eco53kI	GAGCTC	1 cut(s)	1015
Eco57I	CTGAAG	3 cut(s)	333, 642, 1242
Eco81I	CCTNAGG	1 cut(s)	1377
Eco88I	CYCGRG	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	1015
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	3 cut(s)	563, 1268, 1304
EcoT14I	CCWWGG	3 cut(s)	236, 889, 1099
EcoT38I	GRGCYC	1 cut(s)	1017
ErhI	CCWWGG	3 cut(s)	236, 889, 1099
FalI	AAGNNNNNCTT	4 cut(s)	695, 727, 1279, 1311
FaqI	GGGAC	3 cut(s)	246, 951, 1103
Fnu4HI	GCNGC	6 cut(s)	5, 49, 87, 338, 489, 654
FokI	GGATG	4 cut(s)	497, 535, 1179, 1258
FriOI	GRGCYC	1 cut(s)	1017
Fsp4HI	GCNGC	6 cut(s)	5, 49, 87, 338, 489, 654
FspBI	CTAG	3 cut(s)	128, 960, 1046
FspI	TGCGCA	1 cut(s)	1410
GlaI	GCGC	3 cut(s)	227, 1410, 1427
GluI	GCNGC	6 cut(s)	5, 49, 87, 338, 489, 654
GsaI	CCCAGC	2 cut(s)	326, 909
GsuI	CTGGAG	2 cut(s)	567, 1291
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	911
HhaI	GCGC	3 cut(s)	228, 1411, 1428
Hin6I	GCGC	3 cut(s)	226, 1409, 1426
HinP1I	GCGC	3 cut(s)	226, 1409, 1426
HincII	GTYRAC	2 cut(s)	193, 825
HindII	GTYRAC	2 cut(s)	193, 825
HindIII	AAGCTT	1 cut(s)	1336
HinfI	GANTC	7 cut(s)	260, 292, 452, 895, 1024, 1063, 1167
HpaI	GTTAAC	1 cut(s)	825
HphI	GGTGA	1 cut(s)	1151
Hpy166II	GTNNAC	4 cut(s)	193, 307, 808, 825
Hpy188I	TCNGA	4 cut(s)	367, 449, 466, 607
Hpy188III	TCNNGA	8 cut(s)	43, 182, 584, 682, 1021, 1028, 1171, 1376
Hpy8I	GTNNAC	4 cut(s)	193, 307, 808, 825
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	112, 518
HpyCH4V	TGCA	8 cut(s)	4, 392, 671, 751, 764, 955, 1232, 1395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	7 cut(s)	366, 413, 456, 917, 1011, 1262, 1377
HspAI	GCGC	3 cut(s)	226, 1409, 1426
KspAI	GTTAAC	1 cut(s)	825
Kzo9I	GATC	4 cut(s)	39, 75, 873, 1258
LguI	GCTCTTC	1 cut(s)	1022
LmnI	GCTCC	2 cut(s)	206, 1118
Lsp1109I	GCAGC	5 cut(s)	16, 60, 98, 324, 640
LweI	GCATC	4 cut(s)	379, 519, 680, 953
MaeI	CTAG	3 cut(s)	128, 960, 1046
MaeIII	GTNAC	3 cut(s)	92, 175, 588
MalI	GATC	4 cut(s)	41, 77, 875, 1260
MboI	GATC	4 cut(s)	39, 75, 873, 1258
MfeI	CAATTG	2 cut(s)	572, 1390
MhlI	GDGCHC	2 cut(s)	203, 1017
MluCI	AATT	8 cut(s)	343, 430, 572, 950, 1183, 1210, 1322, 1390
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	7 cut(s)	143, 214, 588, 591, 1208, 1309, 1372
MroXI	GAANNNNTTC	2 cut(s)	837, 1178
MseI	TTAA	3 cut(s)	351, 824, 1431
MspA1I	CMGCKG	1 cut(s)	326
MspR9I	CCNGG	3 cut(s)	565, 1270, 1306
MunI	CAATTG	2 cut(s)	572, 1390
MvaI	CCWGG	3 cut(s)	565, 1270, 1306
MwoI	GCNNNNNNNGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	889
NdeII	GATC	4 cut(s)	39, 75, 873, 1258
NlaIV	GGNNCC	3 cut(s)	234, 910, 1218
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	92
NsbI	TGCGCA	1 cut(s)	1410
NspI	RCATGY	1 cut(s)	751
PaeI	GCATGC	1 cut(s)	751
PaeR7I	CTCGAG	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	1022
PdmI	GAANNNNTTC	2 cut(s)	837, 1178
PfeI	GAWTC	6 cut(s)	260, 292, 895, 1024, 1063, 1167
PkrI	GCNGC	6 cut(s)	6, 50, 88, 339, 490, 655
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	1017
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	3 cut(s)	563, 1268, 1304
PspFI	CCCAGC	2 cut(s)	322, 905
PspGI	CCWGG	3 cut(s)	563, 1268, 1304
PspN4I	GGNNCC	3 cut(s)	234, 910, 1218
PspPI	GGNCC	4 cut(s)	233, 396, 909, 1216
PspPPI	RGGWCCY	1 cut(s)	396
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	1017
SapI	GCTCTTC	1 cut(s)	1022
SaqAI	TTAA	3 cut(s)	351, 824, 1431
SatI	GCNGC	6 cut(s)	5, 49, 87, 338, 489, 654
Sau3AI	GATC	4 cut(s)	39, 75, 873, 1258
Sau96I	GGNCC	4 cut(s)	233, 396, 909, 1216
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	3 cut(s)	565, 1270, 1306
SduI	GDGCHC	2 cut(s)	203, 1017
SfaNI	GCATC	4 cut(s)	379, 519, 680, 953
Sfr274I	CTCGAG	1 cut(s)	43
SinI	GGWCC	3 cut(s)	233, 396, 1216
SlaI	CTCGAG	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
SphI	GCATGC	1 cut(s)	751
Sse9I	AATT	8 cut(s)	343, 430, 572, 950, 1183, 1210, 1322, 1390
SsiI	CCGC	1 cut(s)	488
SspI	AATATT	2 cut(s)	545, 1420
SspMI	CTAG	3 cut(s)	128, 960, 1046
SstI	GAGCTC	1 cut(s)	1017
StyD4I	CCNGG	3 cut(s)	563, 1268, 1304
StyI	CCWWGG	3 cut(s)	236, 889, 1099
TaaI	ACNGT	2 cut(s)	112, 518
TaqI	TCGA	1 cut(s)	44
TasI	AATT	8 cut(s)	343, 430, 572, 950, 1183, 1210, 1322, 1390
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	6 cut(s)	260, 292, 895, 1024, 1063, 1167
Tru1I	TTAA	3 cut(s)	351, 824, 1431
Tru9I	TTAA	3 cut(s)	351, 824, 1431
TscAI	CASTG	4 cut(s)	172, 316, 521, 925
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	5 cut(s)	4, 48, 86, 337, 653
Tsp45I	GTSAC	1 cut(s)	92
TspRI	CASTG	4 cut(s)	172, 316, 521, 925
VpaK11BI	GGWCC	3 cut(s)	233, 396, 1216
XapI	RAATTY	3 cut(s)	343, 430, 1210
XceI	RCATGY	1 cut(s)	751
XhoI	CTCGAG	1 cut(s)	43
XmnI	GAANNNNTTC	2 cut(s)	837, 1178
XspI	CTAG	3 cut(s)	128, 960, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.